Wall clock time and date at job start Tue Mar 31 2020 06:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46957 * 2 1 4 4 C 1.53003 * 109.47101 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.46726 * 179.97438 * 4 3 2 6 6 N 1.31134 * 126.55013 * 90.00782 * 5 4 3 7 7 C 1.34496 * 105.61269 * 180.02562 * 6 5 4 8 8 C 1.50703 * 126.28345 * 179.97438 * 7 6 5 9 9 N 1.46506 * 109.46782 * 90.00149 * 8 7 6 10 10 C 1.35306 * 125.86521 * 125.00356 * 9 8 7 11 11 C 1.35350 * 106.17445 * 179.97438 * 10 9 8 12 12 C 1.50706 * 126.75145 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47027 * 124.99837 * 12 11 10 14 14 H 1.07994 * 120.00242 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99684 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00330 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99800 * 179.97438 * 15 13 12 18 18 H 1.48490 * 109.47269 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46986 * 119.99876 * 17 15 13 20 20 H 1.48498 * 109.46849 * 239.99738 * 17 15 13 21 21 N 1.33767 * 106.49820 * 359.97438 * 11 10 9 22 22 N 1.28637 * 108.88434 * 359.74138 * 21 11 10 23 23 N 1.29938 * 107.42455 * 0.24102 * 7 6 5 24 24 O 1.21300 * 110.25682 * 359.57635 * 23 7 6 25 25 H 1.09000 * 109.47606 * 300.00183 * 1 2 3 26 26 H 1.09001 * 109.47313 * 60.00483 * 1 2 3 27 27 H 1.09004 * 109.46807 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47606 * 239.99817 * 2 1 3 29 29 H 1.09001 * 109.47313 * 119.99517 * 2 1 3 30 30 H 1.08998 * 109.47312 * 60.00018 * 3 2 1 31 31 H 1.09001 * 109.46714 * 299.99884 * 3 2 1 32 32 H 1.08998 * 109.46674 * 60.00054 * 4 3 2 33 33 H 1.08991 * 109.47306 * 300.00260 * 4 3 2 34 34 H 1.08999 * 109.47353 * 330.00101 * 8 7 6 35 35 H 1.09000 * 109.47019 * 209.99754 * 8 7 6 36 36 H 1.08001 * 126.91617 * 0.02562 * 10 9 8 37 37 H 1.09006 * 109.46792 * 244.99373 * 12 11 10 38 38 H 1.08992 * 109.47274 * 4.99085 * 12 11 10 39 39 H 0.96990 * 120.00202 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0722 2.8635 0.0000 6 7 4.3321 3.6003 1.0531 7 6 4.7503 4.7846 0.5720 8 6 5.1716 5.9800 1.3874 9 7 6.6106 5.9076 1.6523 10 6 7.5195 6.8667 1.3611 11 6 8.7170 6.3889 1.7729 12 6 10.0496 7.0852 1.6696 13 6 10.6865 7.1559 3.0335 14 1 10.1771 6.7388 3.8896 15 6 11.9195 7.7531 3.1884 16 7 12.5401 8.2606 2.1458 17 14 12.7087 7.8414 4.8793 18 1 11.8139 7.2023 5.8771 19 1 14.0114 7.1289 4.8553 20 1 12.9285 9.2627 5.2492 21 7 8.4851 5.1770 2.2896 22 7 7.2266 4.9237 2.2084 23 7 4.7189 4.7107 -0.7249 24 8 4.3373 3.6135 -1.0739 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9336 0.9287 -0.8891 33 1 3.9329 0.9289 0.8907 34 1 4.6280 5.9852 2.3321 35 1 4.9493 6.8930 0.8351 36 1 7.3279 7.8218 0.8947 37 1 10.6990 6.5285 0.9938 38 1 9.9035 8.0941 1.2840 39 1 13.4076 8.6804 2.2547 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603212103.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:31 Heat of formation + Delta-G solvation = 148.716425 kcal Electronic energy + Delta-G solvation = -21800.769292 eV Core-core repulsion = 18362.814567 eV Total energy + Delta-G solvation = -3437.954725 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.91321 -42.57150 -36.87868 -36.47125 -34.54690 -33.41185 -32.79126 -31.08282 -30.28310 -28.57637 -27.27379 -25.43687 -23.95334 -23.43601 -22.26476 -21.63931 -21.18516 -20.05885 -18.44058 -17.87761 -16.84285 -16.28220 -16.10580 -15.89140 -15.52026 -14.53282 -14.46595 -14.20216 -14.15895 -13.72766 -13.48788 -12.96784 -12.69947 -12.55423 -12.16934 -12.13142 -11.82892 -11.79633 -11.65661 -11.54431 -11.29305 -11.09439 -11.02339 -10.73846 -10.66301 -10.28612 -10.08113 -9.73841 -9.54600 -9.31498 -8.44632 -8.16349 -5.98766 -3.99372 0.81384 1.70663 2.11325 2.48105 2.86728 3.25006 3.35922 3.41026 3.44811 3.52439 3.56867 4.28361 4.36551 4.39466 4.51685 4.56648 4.66674 4.80453 4.94956 5.04908 5.06494 5.13562 5.25848 5.29395 5.38052 5.40139 5.47450 5.63059 5.64460 5.73967 5.79390 5.82286 6.02300 6.22292 7.03619 7.09405 7.52231 7.61181 7.84335 7.99243 8.36803 9.04332 9.24614 9.63504 11.12398 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.038942 B = 0.002489 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.840627 B =11245.455864 C =11539.840224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.118 4.118 4 C -0.028 4.028 5 C 0.182 3.818 6 N -0.454 5.454 7 C 0.154 3.846 8 C 0.220 3.780 9 N -0.310 5.310 10 C -0.078 4.078 11 C 0.037 3.963 12 C 0.091 3.909 13 C -0.503 4.503 14 H 0.060 0.940 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.897 3.103 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.285 1.285 21 N -0.256 5.256 22 N -0.096 5.096 23 N -0.364 5.364 24 O 0.086 5.914 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.125 0.875 35 H 0.129 0.871 36 H 0.185 0.815 37 H 0.040 0.960 38 H 0.038 0.962 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.460 -11.810 -7.365 29.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.156 4.156 4 C -0.067 4.067 5 C -0.039 4.039 6 N -0.187 5.187 7 C -0.120 4.120 8 C 0.096 3.904 9 N -0.107 5.107 10 C -0.225 4.225 11 C -0.099 4.099 12 C 0.053 3.947 13 C -0.541 4.541 14 H 0.078 0.922 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.725 3.275 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.211 1.211 21 N -0.124 5.124 22 N -0.075 5.075 23 N -0.069 5.069 24 O 0.023 5.977 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.131 0.869 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.202 0.798 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -25.186 -12.316 -6.861 28.864 hybrid contribution 0.464 1.143 0.308 1.272 sum -24.722 -11.173 -6.553 27.910 Atomic orbital electron populations 1.21767 0.95454 1.01887 1.02017 1.21506 0.96283 0.95587 1.02714 1.21659 0.92089 0.98387 1.03489 1.20336 0.96724 0.83219 1.06388 1.28875 0.95967 0.98666 0.80372 1.71915 1.16537 1.01685 1.28566 1.25499 1.01910 0.96242 0.88316 1.19832 0.77435 0.92970 1.00135 1.46993 1.07767 1.13911 1.42011 1.23421 0.89403 0.98089 1.11596 1.23073 0.97891 0.91765 0.97193 1.17758 0.84280 0.94123 0.98559 1.21079 1.02996 1.36776 0.93292 0.92183 1.24983 0.97020 0.95491 0.96987 1.69954 1.15405 1.39149 1.29263 0.86444 0.79267 0.77495 0.84315 1.19685 1.20946 1.21088 1.75104 1.04201 1.15584 1.17491 1.78329 1.01758 1.11978 1.15441 1.74667 1.16542 1.00271 1.15416 1.85296 1.59312 1.17151 1.35934 0.92595 0.92644 0.92494 0.91442 0.91358 0.90811 0.91090 0.87806 0.86878 0.85668 0.85293 0.79767 0.94234 0.94408 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 9.91 37.15 0.37 -0.25 16 2 C -0.12 -0.48 5.93 -26.73 -0.16 -0.63 16 3 C -0.12 -0.57 5.20 -26.73 -0.14 -0.71 16 4 C -0.03 -0.16 5.84 -27.88 -0.16 -0.33 16 5 C 0.18 1.90 7.77 -13.06 -0.10 1.80 16 6 N -0.45 -6.02 11.55 -9.87 -0.11 -6.13 16 7 C 0.15 2.10 7.59 -156.38 -1.19 0.92 16 8 C 0.22 2.71 7.08 -5.19 -0.04 2.68 16 9 N -0.31 -5.47 3.43 -62.44 -0.21 -5.69 16 10 C -0.08 -1.45 11.49 -17.05 -0.20 -1.65 16 11 C 0.04 0.88 6.44 -82.78 -0.53 0.34 16 12 C 0.09 2.43 5.55 -29.03 -0.16 2.27 16 13 C -0.50 -14.69 9.09 -34.44 -0.31 -15.01 16 14 H 0.06 1.80 7.74 -52.49 -0.41 1.39 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 17 Si 0.90 22.33 29.54 -169.99 -5.02 17.31 16 18 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 N -0.26 -6.34 12.40 33.29 0.41 -5.92 16 22 N -0.10 -2.08 12.93 60.35 0.78 -1.30 16 23 N -0.36 -5.04 12.16 30.90 0.38 -4.66 16 24 O 0.09 1.03 11.31 18.10 0.20 1.23 16 25 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 26 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 27 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 28 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.13 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.13 1.13 8.07 -51.93 -0.42 0.71 16 36 H 0.19 2.69 8.06 -52.49 -0.42 2.27 16 37 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.04 0.99 8.12 -51.93 -0.42 0.57 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 345.13 15.07 5.20 5.20 Total: -1.00 -36.18 345.13 -5.81 -41.99 By element: Atomic # 1 Polarization: -1.39 SS G_CDS: -5.46 Total: -6.85 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -2.72 Total: -9.03 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: 1.98 Total: -49.85 kcal Atomic # 8 Polarization: 1.03 SS G_CDS: 0.20 Total: 1.23 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -36.18 -5.81 -41.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603212103.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.710 kcal (2) G-P(sol) polarization free energy of solvation -36.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds