Wall clock time and date at job start Tue Mar 31 2020 06:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46957 * 2 1 4 4 C 1.53003 * 109.47101 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.46726 * 179.97438 * 4 3 2 6 6 N 1.31134 * 126.55013 * 90.00782 * 5 4 3 7 7 C 1.34496 * 105.61269 * 180.02562 * 6 5 4 8 8 C 1.50703 * 126.28345 * 179.97438 * 7 6 5 9 9 N 1.46506 * 109.46782 * 90.00149 * 8 7 6 10 10 C 1.35306 * 125.86521 * 125.00356 * 9 8 7 11 11 C 1.35350 * 106.17445 * 179.97438 * 10 9 8 12 12 C 1.50706 * 126.75145 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47027 * 124.99837 * 12 11 10 14 14 H 1.07994 * 120.00242 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99684 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00330 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99800 * 179.97438 * 15 13 12 18 18 H 1.48490 * 109.47269 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46986 * 119.99876 * 17 15 13 20 20 H 1.48498 * 109.46849 * 239.99738 * 17 15 13 21 21 N 1.33767 * 106.49820 * 359.97438 * 11 10 9 22 22 N 1.28637 * 108.88434 * 359.74138 * 21 11 10 23 23 N 1.29938 * 107.42455 * 0.24102 * 7 6 5 24 24 O 1.21300 * 110.25682 * 359.57635 * 23 7 6 25 25 H 1.09000 * 109.47606 * 300.00183 * 1 2 3 26 26 H 1.09001 * 109.47313 * 60.00483 * 1 2 3 27 27 H 1.09004 * 109.46807 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47606 * 239.99817 * 2 1 3 29 29 H 1.09001 * 109.47313 * 119.99517 * 2 1 3 30 30 H 1.08998 * 109.47312 * 60.00018 * 3 2 1 31 31 H 1.09001 * 109.46714 * 299.99884 * 3 2 1 32 32 H 1.08998 * 109.46674 * 60.00054 * 4 3 2 33 33 H 1.08991 * 109.47306 * 300.00260 * 4 3 2 34 34 H 1.08999 * 109.47353 * 330.00101 * 8 7 6 35 35 H 1.09000 * 109.47019 * 209.99754 * 8 7 6 36 36 H 1.08001 * 126.91617 * 0.02562 * 10 9 8 37 37 H 1.09006 * 109.46792 * 244.99373 * 12 11 10 38 38 H 1.08992 * 109.47274 * 4.99085 * 12 11 10 39 39 H 0.96990 * 120.00202 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0722 2.8635 0.0000 6 7 4.3321 3.6003 1.0531 7 6 4.7503 4.7846 0.5720 8 6 5.1716 5.9800 1.3874 9 7 6.6106 5.9076 1.6523 10 6 7.5195 6.8667 1.3611 11 6 8.7170 6.3889 1.7729 12 6 10.0496 7.0852 1.6696 13 6 10.6865 7.1559 3.0335 14 1 10.1771 6.7388 3.8896 15 6 11.9195 7.7531 3.1884 16 7 12.5401 8.2606 2.1458 17 14 12.7087 7.8414 4.8793 18 1 11.8139 7.2023 5.8771 19 1 14.0114 7.1289 4.8553 20 1 12.9285 9.2627 5.2492 21 7 8.4851 5.1770 2.2896 22 7 7.2266 4.9237 2.2084 23 7 4.7189 4.7107 -0.7249 24 8 4.3373 3.6135 -1.0739 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9336 0.9287 -0.8891 33 1 3.9329 0.9289 0.8907 34 1 4.6280 5.9852 2.3321 35 1 4.9493 6.8930 0.8351 36 1 7.3279 7.8218 0.8947 37 1 10.6990 6.5285 0.9938 38 1 9.9035 8.0941 1.2840 39 1 13.4076 8.6804 2.2547 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603212103.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:30 Heat of formation + Delta-G solvation = 123.187399 kcal Electronic energy + Delta-G solvation = -21801.876313 eV Core-core repulsion = 18362.814567 eV Total energy + Delta-G solvation = -3439.061746 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -46.85407 -44.16006 -37.70697 -37.19383 -35.91212 -35.12328 -33.86809 -32.93770 -30.90435 -29.94462 -29.05117 -26.02697 -25.51639 -24.90911 -23.33199 -22.64739 -22.02702 -21.48378 -19.44209 -18.87391 -18.55000 -17.99131 -17.37376 -16.58496 -16.51588 -16.21139 -15.71585 -15.25148 -14.85015 -14.76037 -14.40898 -14.27211 -13.98850 -13.74330 -13.48838 -13.36433 -12.98297 -12.87970 -12.67220 -12.54400 -12.35594 -12.27642 -12.18145 -11.93942 -11.86971 -11.72236 -11.45543 -11.42371 -11.12865 -11.06052 -10.60400 -9.95037 -8.20253 -6.28999 -0.10525 0.56370 0.76561 1.39299 1.40782 1.53768 1.66276 1.69607 1.71430 2.32158 2.43567 2.70580 3.12471 3.48987 3.60911 3.77901 3.91007 3.99242 4.06222 4.19831 4.21793 4.38315 4.43247 4.46218 4.63087 4.71168 4.71284 4.77693 4.95055 5.01634 5.10123 5.23685 5.30794 5.38318 5.40196 5.49855 5.51401 5.63071 5.75299 6.19857 6.79306 6.92732 7.37711 7.59992 8.90930 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.038942 B = 0.002489 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.840627 B =11245.455864 C =11539.840224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.120 4.120 3 C -0.110 4.110 4 C -0.027 4.027 5 C 0.195 3.805 6 N -0.486 5.486 7 C 0.141 3.859 8 C 0.209 3.791 9 N -0.293 5.293 10 C -0.042 4.042 11 C -0.006 4.006 12 C 0.102 3.898 13 C -0.523 4.523 14 H 0.045 0.955 15 C 0.007 3.993 16 N -0.927 5.927 17 Si 0.964 3.036 18 H -0.274 1.274 19 H -0.277 1.277 20 H -0.270 1.270 21 N -0.303 5.303 22 N -0.111 5.111 23 N -0.382 5.382 24 O 0.085 5.915 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.129 0.871 33 H 0.118 0.882 34 H 0.149 0.851 35 H 0.172 0.828 36 H 0.232 0.768 37 H 0.007 0.993 38 H 0.038 0.962 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.131 -11.737 -7.401 30.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C -0.149 4.149 4 C -0.066 4.066 5 C -0.025 4.025 6 N -0.218 5.218 7 C -0.132 4.132 8 C 0.088 3.912 9 N -0.089 5.089 10 C -0.191 4.191 11 C -0.144 4.144 12 C 0.063 3.937 13 C -0.561 4.561 14 H 0.063 0.937 15 C -0.191 4.191 16 N -0.567 5.567 17 Si 0.789 3.211 18 H -0.199 1.199 19 H -0.203 1.203 20 H -0.195 1.195 21 N -0.170 5.170 22 N -0.090 5.090 23 N -0.088 5.088 24 O 0.022 5.978 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.147 0.853 33 H 0.136 0.864 34 H 0.167 0.833 35 H 0.189 0.811 36 H 0.248 0.752 37 H 0.025 0.975 38 H 0.056 0.944 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -26.897 -12.271 -6.896 30.358 hybrid contribution 0.828 1.056 0.237 1.363 sum -26.070 -11.215 -6.659 29.150 Atomic orbital electron populations 1.21784 0.95601 1.02115 1.01831 1.21494 0.96103 0.94831 1.03371 1.21604 0.91076 0.99091 1.03134 1.20661 0.97358 0.80730 1.07850 1.29701 0.93938 0.99498 0.79382 1.71929 1.17976 1.02172 1.29750 1.25707 1.02262 0.96770 0.88477 1.20494 0.74154 0.94490 1.02053 1.47329 1.09649 1.12422 1.39548 1.23868 0.87732 0.98989 1.08552 1.22740 0.98427 0.92583 1.00630 1.17415 0.85669 0.93884 0.96695 1.21290 1.03742 1.37077 0.94031 0.93703 1.25809 0.97406 0.94921 1.00938 1.70044 1.15886 1.39518 1.31226 0.85417 0.78129 0.78152 0.79441 1.19874 1.20270 1.19500 1.75011 1.06026 1.16727 1.19227 1.78207 1.00904 1.13308 1.16588 1.74643 1.17276 1.01253 1.15636 1.85266 1.59310 1.16933 1.36264 0.93096 0.92557 0.92080 0.90337 0.91173 0.91881 0.90792 0.85316 0.86376 0.83311 0.81085 0.75175 0.97467 0.94416 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 9.91 71.98 0.71 -0.31 16 2 C -0.12 -0.70 5.93 30.59 0.18 -0.52 16 3 C -0.11 -0.88 5.20 30.60 0.16 -0.72 16 4 C -0.03 -0.27 5.84 29.85 0.17 -0.10 16 5 C 0.19 3.81 7.77 88.38 0.69 4.49 16 6 N -0.49 -12.29 11.55 -303.20 -3.50 -15.80 16 7 C 0.14 3.62 7.59 138.47 1.05 4.67 16 8 C 0.21 4.57 7.08 85.63 0.61 5.17 16 9 N -0.29 -9.81 3.43 -351.46 -1.20 -11.01 16 10 C -0.04 -1.50 11.49 83.49 0.96 -0.54 16 11 C -0.01 -0.30 6.44 41.60 0.27 -0.04 16 12 C 0.10 5.60 5.55 29.10 0.16 5.76 16 13 C -0.52 -31.29 9.09 25.60 0.23 -31.05 16 14 H 0.04 2.76 7.74 -2.91 -0.02 2.73 16 15 C 0.01 0.44 5.46 84.65 0.46 0.90 16 16 N -0.93 -56.00 13.29 21.45 0.28 -55.71 16 17 Si 0.96 46.07 29.54 68.60 2.03 48.10 16 18 H -0.27 -13.06 7.11 99.48 0.71 -12.36 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 21 N -0.30 -15.29 12.40 -48.60 -0.60 -15.90 16 22 N -0.11 -4.79 12.93 37.02 0.48 -4.31 16 23 N -0.38 -9.99 12.16 -60.33 -0.73 -10.73 16 24 O 0.08 1.91 11.31 74.82 0.85 2.75 16 25 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 26 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.15 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.17 2.25 8.07 -2.39 -0.02 2.23 16 36 H 0.23 5.80 8.06 -2.91 -0.02 5.78 16 37 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 38 H 0.04 2.01 8.12 -2.39 -0.02 1.99 16 39 H 0.27 15.02 8.31 -92.72 -0.77 14.25 16 Total: -1.00 -80.63 345.13 4.30 -76.33 By element: Atomic # 1 Polarization: -2.50 SS G_CDS: 1.05 Total: -1.45 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: 5.66 Total: -12.29 kcal Atomic # 7 Polarization: -108.17 SS G_CDS: -5.28 Total: -113.45 kcal Atomic # 8 Polarization: 1.91 SS G_CDS: 0.85 Total: 2.75 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -80.63 4.30 -76.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603212103.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.518 kcal (2) G-P(sol) polarization free energy of solvation -80.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds