Wall clock time and date at job start Tue Mar 31 2020 08:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00195 * 2 1 4 4 H 1.48501 * 109.46737 * 239.99886 * 3 2 1 5 5 H 1.48496 * 109.47116 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46979 * 120.00244 * 3 2 1 7 7 C 1.37882 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00246 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99799 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.50172 * 299.93257 * 9 7 2 11 11 C 1.53039 * 109.49706 * 59.99946 * 9 7 2 12 12 C 1.53041 * 109.53808 * 181.34588 * 11 9 7 13 13 C 1.53190 * 109.31335 * 298.63236 * 12 11 9 14 14 N 1.46929 * 108.77253 * 54.63377 * 13 12 11 15 15 C 1.34784 * 120.62885 * 126.41182 * 14 13 12 16 16 O 1.21278 * 120.00150 * 175.24507 * 15 14 13 17 17 C 1.50707 * 119.99864 * 355.24572 * 15 14 13 18 18 C 1.50697 * 115.54907 * 280.57330 * 17 15 14 19 19 O 1.20757 * 119.99965 * 117.38204 * 18 17 15 20 20 C 1.50704 * 120.00245 * 297.38316 * 18 17 15 21 21 C 1.52990 * 117.49734 * 222.66101 * 20 18 17 22 22 C 1.52992 * 117.49889 * 153.99941 * 20 18 17 23 23 C 1.52998 * 117.49424 * 134.86851 * 17 15 14 24 24 C 1.53000 * 117.49807 * 66.24619 * 17 15 14 25 25 C 1.46917 * 118.73954 * 306.39209 * 14 13 12 26 26 H 0.97001 * 120.00127 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46140 * 61.32775 * 11 9 7 28 28 H 1.09000 * 109.45242 * 301.35800 * 11 9 7 29 29 H 1.09000 * 109.49770 * 58.58736 * 12 11 9 30 30 H 1.09007 * 109.49865 * 178.67935 * 12 11 9 31 31 H 1.09005 * 109.58361 * 174.41726 * 13 12 11 32 32 H 1.08996 * 109.59074 * 294.84696 * 13 12 11 33 33 H 1.09005 * 115.54817 * 8.32654 * 20 18 17 34 34 H 1.09002 * 117.50585 * 359.97438 * 21 20 18 35 35 H 1.09005 * 117.50157 * 145.01939 * 21 20 18 36 36 H 1.09004 * 117.49782 * 214.97560 * 22 20 18 37 37 H 1.08997 * 117.50189 * 359.97228 * 22 20 18 38 38 H 1.08997 * 117.50101 * 359.97438 * 23 17 15 39 39 H 1.09001 * 117.49733 * 145.02036 * 23 17 15 40 40 H 1.09001 * 117.49490 * 214.97972 * 24 17 15 41 41 H 1.08995 * 117.49905 * 359.97438 * 24 17 15 42 42 H 1.09001 * 109.58935 * 293.81773 * 25 14 13 43 43 H 1.09007 * 109.70613 * 173.46830 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0017 10 1 0.6253 -2.5573 0.8924 11 6 0.3703 -2.5817 -1.2473 12 6 -0.4207 -3.8917 -1.2302 13 6 0.5547 -5.0728 -1.2476 14 7 1.4984 -4.9231 -0.1314 15 6 1.6759 -5.9216 0.7564 16 8 2.5192 -5.8205 1.6221 17 6 0.8265 -7.1637 0.6732 18 6 -0.5599 -7.0429 1.2515 19 8 -1.5252 -7.1774 0.5387 20 6 -0.7415 -6.7542 2.7195 21 6 -1.8221 -7.5394 3.4653 22 6 -2.0343 -6.0571 3.1476 23 6 1.5339 -8.5135 0.8087 24 6 1.0046 -8.0605 -0.5535 25 6 2.2452 -3.6645 -0.0017 26 1 -0.4850 0.8400 0.0004 27 1 0.9986 -2.5484 -2.1374 28 1 -0.3218 -1.7397 -1.2596 29 1 -1.0306 -3.9367 -0.3279 30 1 -1.0651 -3.9390 -2.1081 31 1 0.0014 -6.0052 -1.1357 32 1 1.1019 -5.0810 -2.1901 33 1 0.1686 -6.5068 3.2661 34 1 -2.4021 -8.2645 2.8943 35 1 -1.6233 -7.8082 4.5028 36 1 -1.9750 -5.3514 3.9762 37 1 -2.7533 -5.8069 2.3676 38 1 2.6136 -8.5032 0.9575 39 1 0.9966 -9.3146 1.3163 40 1 0.1191 -8.5634 -0.9421 41 1 1.7358 -7.7519 -1.3006 42 1 2.9304 -3.5578 -0.8427 43 1 2.8093 -3.6663 0.9311 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000617293952.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:45:39 Heat of formation + Delta-G solvation = -24.482706 kcal Electronic energy + Delta-G solvation = -24404.835632 eV Core-core repulsion = 21030.618021 eV Total energy + Delta-G solvation = -3374.217610 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.82062 -39.18472 -37.07948 -36.43359 -35.69142 -33.45002 -31.33368 -30.23094 -27.11826 -25.26978 -24.88995 -22.88990 -22.53876 -22.42851 -21.64915 -20.54773 -19.20322 -18.18824 -17.29525 -16.44854 -15.89095 -15.74496 -15.60583 -14.88391 -14.61274 -14.26443 -14.00397 -13.82567 -13.46608 -13.24705 -12.76754 -12.76617 -12.63799 -12.12109 -11.97002 -11.74117 -11.65462 -11.23833 -10.98462 -10.88381 -10.82188 -10.74838 -10.59263 -10.56199 -10.28138 -9.96253 -9.86502 -9.70319 -9.48497 -9.30624 -8.85146 -8.40177 -7.96031 -6.03104 -4.10761 1.64386 2.80872 3.22271 3.30448 3.35036 3.37869 3.47822 3.71937 3.88524 4.41008 4.54209 4.63162 4.67041 4.72958 4.85864 4.97488 5.17476 5.26139 5.40138 5.45717 5.46474 5.52057 5.65076 5.67403 5.78154 5.85013 5.89883 5.91755 6.01322 6.10523 6.33096 6.36873 6.48363 6.62624 6.78820 6.91298 7.15372 7.30629 7.36690 7.67195 7.86679 7.94565 8.05849 8.34042 8.51248 8.92442 9.54176 11.02285 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019486 B = 0.004788 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.554881 B = 5846.606140 C = 6247.830479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.057 0.943 9 C 0.041 3.959 10 H 0.029 0.971 11 C -0.112 4.112 12 C -0.133 4.133 13 C 0.103 3.897 14 N -0.592 5.592 15 C 0.553 3.447 16 O -0.539 6.539 17 C -0.210 4.210 18 C 0.437 3.563 19 O -0.443 6.443 20 C -0.217 4.217 21 C -0.149 4.149 22 C -0.146 4.146 23 C -0.124 4.124 24 C -0.146 4.146 25 C 0.117 3.883 26 H 0.261 0.739 27 H 0.036 0.964 28 H 0.096 0.904 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.129 0.871 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.057 0.943 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.429 -16.050 1.030 16.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.554 4.554 8 H 0.075 0.925 9 C 0.022 3.978 10 H 0.047 0.953 11 C -0.150 4.150 12 C -0.171 4.171 13 C -0.019 4.019 14 N -0.323 5.323 15 C 0.338 3.662 16 O -0.417 6.417 17 C -0.214 4.214 18 C 0.312 3.688 19 O -0.315 6.315 20 C -0.236 4.236 21 C -0.186 4.186 22 C -0.183 4.183 23 C -0.162 4.162 24 C -0.183 4.183 25 C -0.004 4.004 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.114 0.886 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.147 0.853 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.075 0.925 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.652 -15.910 1.088 16.166 hybrid contribution 0.532 1.080 -0.049 1.205 sum -2.120 -14.830 1.038 15.017 Atomic orbital electron populations 1.69864 1.05903 1.26623 1.50285 1.24933 0.94847 0.99067 0.94883 0.86636 0.79587 0.82979 0.78678 1.20246 1.21298 1.20215 1.21017 0.92936 0.90214 1.51233 0.92504 1.18968 0.92892 0.91051 0.94885 0.95293 1.21643 0.99451 0.95431 0.98517 1.21975 0.97602 0.96480 1.01026 1.21884 0.91364 0.99838 0.88864 1.48267 1.41720 1.15569 1.26746 1.18883 0.82970 0.82610 0.81723 1.90668 1.35128 1.79897 1.36032 1.21883 0.97689 0.94312 1.07528 1.22446 0.87275 0.70396 0.88713 1.90375 1.42056 1.37001 1.62093 1.22730 0.96811 1.09106 0.94983 1.22950 0.99518 0.95353 1.00757 1.22998 0.96560 0.95119 1.03623 1.23011 1.01401 0.92658 0.99109 1.23145 1.03850 1.00283 0.91015 1.22070 0.95128 0.81557 1.01633 0.92885 0.94545 0.88570 0.92590 0.92418 0.90317 0.91827 0.85254 0.88207 0.87695 0.87514 0.87665 0.87061 0.87676 0.87163 0.87462 0.92456 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.89 11.31 55.43 0.63 -24.27 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.52 -13.88 8.57 -34.44 -0.29 -14.17 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.04 1.01 2.25 -91.65 -0.21 0.81 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 11 C -0.11 -2.56 4.96 -26.69 -0.13 -2.69 16 12 C -0.13 -2.52 6.08 -26.61 -0.16 -2.68 16 13 C 0.10 1.74 6.06 -3.71 -0.02 1.71 16 14 N -0.59 -11.18 2.97 -172.77 -0.51 -11.70 16 15 C 0.55 10.05 6.80 -10.98 -0.07 9.97 16 16 O -0.54 -11.30 16.43 5.56 0.09 -11.20 16 17 C -0.21 -3.00 1.09 -156.81 -0.17 -3.17 16 18 C 0.44 6.40 5.96 -29.03 -0.17 6.23 16 19 O -0.44 -7.05 16.22 6.00 0.10 -6.95 16 20 C -0.22 -2.89 6.06 -91.78 -0.56 -3.45 16 21 C -0.15 -1.54 10.13 -26.70 -0.27 -1.81 16 22 C -0.15 -1.79 10.05 -26.70 -0.27 -2.06 16 23 C -0.12 -1.38 9.85 -26.73 -0.26 -1.64 16 24 C -0.15 -1.65 8.05 -26.73 -0.22 -1.87 16 25 C 0.12 2.52 5.64 -3.72 -0.02 2.50 16 26 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.10 2.47 6.04 -51.93 -0.31 2.16 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.08 1.21 4.57 -51.93 -0.24 0.97 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.13 1.79 8.14 -51.93 -0.42 1.37 16 34 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.10 1.38 7.91 -51.93 -0.41 0.97 16 38 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.11 1.15 7.95 -51.93 -0.41 0.73 16 41 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.08 1.82 7.04 -51.92 -0.37 1.46 16 LS Contribution 350.03 15.07 5.27 5.27 Total: -1.00 -30.12 350.03 -9.15 -39.26 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.78 Total: 4.25 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -2.92 Total: -10.66 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.11 Total: -35.96 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: 0.19 Total: -18.16 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.12 -9.15 -39.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617293952.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.782 kcal (2) G-P(sol) polarization free energy of solvation -30.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds