Wall clock time and date at job start Tue Mar 31 2020 08:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00195 * 2 1 4 4 H 1.48501 * 109.46737 * 239.99886 * 3 2 1 5 5 H 1.48496 * 109.47116 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46979 * 120.00244 * 3 2 1 7 7 C 1.37882 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00246 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99799 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.50172 * 299.93257 * 9 7 2 11 11 C 1.53039 * 109.49706 * 59.99946 * 9 7 2 12 12 C 1.53041 * 109.53808 * 181.34588 * 11 9 7 13 13 C 1.53190 * 109.31335 * 298.63236 * 12 11 9 14 14 N 1.46929 * 108.77253 * 54.63377 * 13 12 11 15 15 C 1.34784 * 120.62885 * 126.41182 * 14 13 12 16 16 O 1.21278 * 120.00150 * 175.24507 * 15 14 13 17 17 C 1.50707 * 119.99864 * 355.24572 * 15 14 13 18 18 C 1.50697 * 115.54907 * 280.57330 * 17 15 14 19 19 O 1.20757 * 119.99965 * 117.38204 * 18 17 15 20 20 C 1.50704 * 120.00245 * 297.38316 * 18 17 15 21 21 C 1.52990 * 117.49734 * 222.66101 * 20 18 17 22 22 C 1.52992 * 117.49889 * 153.99941 * 20 18 17 23 23 C 1.52998 * 117.49424 * 134.86851 * 17 15 14 24 24 C 1.53000 * 117.49807 * 66.24619 * 17 15 14 25 25 C 1.46917 * 118.73954 * 306.39209 * 14 13 12 26 26 H 0.97001 * 120.00127 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46140 * 61.32775 * 11 9 7 28 28 H 1.09000 * 109.45242 * 301.35800 * 11 9 7 29 29 H 1.09000 * 109.49770 * 58.58736 * 12 11 9 30 30 H 1.09007 * 109.49865 * 178.67935 * 12 11 9 31 31 H 1.09005 * 109.58361 * 174.41726 * 13 12 11 32 32 H 1.08996 * 109.59074 * 294.84696 * 13 12 11 33 33 H 1.09005 * 115.54817 * 8.32654 * 20 18 17 34 34 H 1.09002 * 117.50585 * 359.97438 * 21 20 18 35 35 H 1.09005 * 117.50157 * 145.01939 * 21 20 18 36 36 H 1.09004 * 117.49782 * 214.97560 * 22 20 18 37 37 H 1.08997 * 117.50189 * 359.97228 * 22 20 18 38 38 H 1.08997 * 117.50101 * 359.97438 * 23 17 15 39 39 H 1.09001 * 117.49733 * 145.02036 * 23 17 15 40 40 H 1.09001 * 117.49490 * 214.97972 * 24 17 15 41 41 H 1.08995 * 117.49905 * 359.97438 * 24 17 15 42 42 H 1.09001 * 109.58935 * 293.81773 * 25 14 13 43 43 H 1.09007 * 109.70613 * 173.46830 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0017 10 1 0.6253 -2.5573 0.8924 11 6 0.3703 -2.5817 -1.2473 12 6 -0.4207 -3.8917 -1.2302 13 6 0.5547 -5.0728 -1.2476 14 7 1.4984 -4.9231 -0.1314 15 6 1.6759 -5.9216 0.7564 16 8 2.5192 -5.8205 1.6221 17 6 0.8265 -7.1637 0.6732 18 6 -0.5599 -7.0429 1.2515 19 8 -1.5252 -7.1774 0.5387 20 6 -0.7415 -6.7542 2.7195 21 6 -1.8221 -7.5394 3.4653 22 6 -2.0343 -6.0571 3.1476 23 6 1.5339 -8.5135 0.8087 24 6 1.0046 -8.0605 -0.5535 25 6 2.2452 -3.6645 -0.0017 26 1 -0.4850 0.8400 0.0004 27 1 0.9986 -2.5484 -2.1374 28 1 -0.3218 -1.7397 -1.2596 29 1 -1.0306 -3.9367 -0.3279 30 1 -1.0651 -3.9390 -2.1081 31 1 0.0014 -6.0052 -1.1357 32 1 1.1019 -5.0810 -2.1901 33 1 0.1686 -6.5068 3.2661 34 1 -2.4021 -8.2645 2.8943 35 1 -1.6233 -7.8082 4.5028 36 1 -1.9750 -5.3514 3.9762 37 1 -2.7533 -5.8069 2.3676 38 1 2.6136 -8.5032 0.9575 39 1 0.9966 -9.3146 1.3163 40 1 0.1191 -8.5634 -0.9421 41 1 1.7358 -7.7519 -1.3006 42 1 2.9304 -3.5578 -0.8427 43 1 2.8093 -3.6663 0.9311 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000617293952.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:45:39 Heat of formation + Delta-G solvation = -40.499563 kcal Electronic energy + Delta-G solvation = -24405.530175 eV Core-core repulsion = 21030.618021 eV Total energy + Delta-G solvation = -3374.912153 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.04161 -40.51706 -38.61431 -37.53143 -36.79336 -35.34488 -33.07534 -32.03434 -28.26023 -27.14609 -26.41059 -24.14677 -23.51714 -23.42848 -23.22520 -21.88254 -20.77635 -19.52591 -18.68978 -18.23150 -17.26580 -17.05676 -16.79294 -16.58906 -15.83925 -15.66625 -15.38920 -15.10772 -14.99910 -14.65210 -14.58658 -14.16382 -13.81915 -13.73558 -13.62189 -12.86177 -12.79726 -12.64412 -12.55742 -12.53246 -12.25749 -12.05679 -11.88433 -11.73606 -11.68204 -11.57091 -11.53232 -11.31697 -10.94159 -10.78182 -10.65983 -10.44491 -9.59223 -8.11555 -6.27366 0.52988 1.41135 1.42877 1.43463 1.50685 1.91815 2.41416 2.43984 2.73478 2.85108 3.15102 3.33181 3.65554 3.70743 3.73197 3.92123 3.98353 4.02887 4.15602 4.16351 4.29614 4.48092 4.51122 4.59386 4.62987 4.63632 4.74475 4.78148 4.82396 4.86123 4.91561 4.93469 5.04763 5.08016 5.10626 5.19727 5.41566 5.47393 5.58756 5.88503 6.08808 6.23564 6.30811 6.43141 6.81424 7.04278 7.41090 8.92195 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019486 B = 0.004788 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.554881 B = 5846.606140 C = 6247.830479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.018 3.982 3 Si 0.956 3.044 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.538 4.538 8 H 0.055 0.945 9 C 0.043 3.957 10 H -0.015 1.015 11 C -0.104 4.104 12 C -0.125 4.125 13 C 0.109 3.891 14 N -0.598 5.598 15 C 0.551 3.449 16 O -0.574 6.574 17 C -0.235 4.235 18 C 0.438 3.562 19 O -0.459 6.459 20 C -0.241 4.241 21 C -0.115 4.115 22 C -0.160 4.160 23 C -0.106 4.106 24 C -0.129 4.129 25 C 0.130 3.870 26 H 0.262 0.738 27 H 0.041 0.959 28 H 0.063 0.937 29 H 0.034 0.966 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.108 0.892 35 H 0.131 0.869 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.115 0.885 42 H 0.067 0.933 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.345 -17.951 0.244 18.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.182 4.182 3 Si 0.782 3.218 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.576 4.576 8 H 0.074 0.926 9 C 0.024 3.976 10 H 0.003 0.997 11 C -0.142 4.142 12 C -0.163 4.163 13 C -0.013 4.013 14 N -0.329 5.329 15 C 0.339 3.661 16 O -0.454 6.454 17 C -0.239 4.239 18 C 0.315 3.685 19 O -0.333 6.333 20 C -0.260 4.260 21 C -0.152 4.152 22 C -0.197 4.197 23 C -0.144 4.144 24 C -0.166 4.166 25 C 0.008 3.992 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.052 0.948 30 H 0.103 0.897 31 H 0.117 0.883 32 H 0.106 0.894 33 H 0.136 0.864 34 H 0.126 0.874 35 H 0.149 0.851 36 H 0.131 0.869 37 H 0.111 0.889 38 H 0.129 0.871 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.134 0.866 42 H 0.085 0.915 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.572 -17.833 0.292 18.020 hybrid contribution 0.500 1.681 0.249 1.772 sum -2.073 -16.152 0.541 16.293 Atomic orbital electron populations 1.70012 1.07202 1.27318 1.50769 1.25703 0.95650 1.02338 0.94478 0.85641 0.78402 0.78910 0.78891 1.19226 1.20896 1.20002 1.21379 0.93144 0.91626 1.51443 0.92631 1.18860 0.93085 0.91782 0.93923 0.99681 1.21430 0.98793 0.96461 0.97523 1.21871 0.97783 0.95424 1.01231 1.21993 0.90795 0.99448 0.89090 1.48301 1.41942 1.14811 1.27821 1.19493 0.82717 0.83390 0.80486 1.90639 1.36827 1.80843 1.37089 1.21770 0.97298 0.93624 1.11257 1.22573 0.87174 0.69717 0.89076 1.90361 1.42418 1.38069 1.62469 1.22761 0.97017 1.11436 0.94806 1.23093 0.96551 0.93795 1.01746 1.23047 0.95772 0.97221 1.03666 1.23188 1.01436 0.90841 0.98896 1.23315 1.04474 0.98137 0.90681 1.21650 0.94462 0.82151 1.00956 0.92924 0.94011 0.91812 0.94752 0.89699 0.88264 0.89375 0.86400 0.87368 0.85086 0.86943 0.88937 0.87138 0.85164 0.85604 0.86637 0.91480 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.72 11.31 21.45 0.24 -52.48 16 2 C 0.02 0.97 5.30 84.66 0.45 1.42 16 3 Si 0.96 43.55 29.54 68.60 2.03 45.58 16 4 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 7 C -0.54 -29.76 8.57 25.60 0.22 -29.54 16 8 H 0.06 3.01 7.74 -2.92 -0.02 2.99 16 9 C 0.04 2.18 2.25 -11.46 -0.03 2.16 16 10 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 11 C -0.10 -4.82 4.96 30.62 0.15 -4.67 16 12 C -0.12 -4.69 6.08 30.67 0.19 -4.50 16 13 C 0.11 3.46 6.06 86.36 0.52 3.99 16 14 N -0.60 -22.49 2.97 -818.90 -2.43 -24.92 16 15 C 0.55 19.93 6.80 87.66 0.60 20.53 16 16 O -0.57 -24.46 16.43 -3.02 -0.05 -24.51 16 17 C -0.24 -6.35 1.09 -53.67 -0.06 -6.41 16 18 C 0.44 12.34 5.96 29.10 0.17 12.52 16 19 O -0.46 -13.95 16.22 -1.44 -0.02 -13.97 16 20 C -0.24 -6.30 6.06 -11.54 -0.07 -6.37 16 21 C -0.12 -2.15 10.13 30.61 0.31 -1.84 16 22 C -0.16 -3.90 10.05 30.61 0.31 -3.59 16 23 C -0.11 -2.06 9.85 30.59 0.30 -1.76 16 24 C -0.13 -2.51 8.05 30.60 0.25 -2.26 16 25 C 0.13 5.74 5.64 86.36 0.49 6.23 16 26 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 27 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.06 3.38 6.04 -2.39 -0.01 3.37 16 29 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.08 2.73 8.14 -2.38 -0.02 2.71 16 31 H 0.10 2.81 4.57 -2.38 -0.01 2.80 16 32 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.12 3.32 8.14 -2.38 -0.02 3.30 16 34 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.13 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.09 2.47 7.91 -2.39 -0.02 2.46 16 38 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.13 2.11 7.95 -2.39 -0.02 2.09 16 41 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 43 H 0.06 2.81 7.04 -2.38 -0.02 2.80 16 Total: -1.00 -67.67 350.03 4.55 -63.12 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 1.00 Total: 21.26 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: 3.80 Total: -14.08 kcal Atomic # 7 Polarization: -75.21 SS G_CDS: -2.19 Total: -77.40 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -0.07 Total: -38.47 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -67.67 4.55 -63.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617293952.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.616 kcal (2) G-P(sol) polarization free energy of solvation -67.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds