Wall clock time and date at job start Tue Mar 31 2020 08:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99943 * 2 1 4 4 H 1.48496 * 109.47258 * 269.99950 * 3 2 1 5 5 H 1.48503 * 109.47134 * 29.99977 * 3 2 1 6 6 H 1.48504 * 109.47114 * 149.99888 * 3 2 1 7 7 C 1.37880 * 120.00030 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99738 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00048 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.49363 * 60.06434 * 9 7 2 11 11 C 1.53035 * 109.49805 * 300.00080 * 9 7 2 12 12 C 1.53047 * 109.53962 * 178.64926 * 11 9 7 13 13 C 1.53186 * 109.30897 * 61.36439 * 12 11 9 14 14 N 1.46924 * 108.77830 * 305.36701 * 13 12 11 15 15 C 1.34781 * 120.63057 * 233.58745 * 14 13 12 16 16 O 1.21285 * 120.00060 * 175.15056 * 15 14 13 17 17 C 1.50698 * 120.00115 * 355.15427 * 15 14 13 18 18 C 1.50701 * 115.56558 * 79.95852 * 17 15 14 19 19 O 1.20759 * 120.00168 * 213.63693 * 18 17 15 20 20 C 1.50704 * 119.99492 * 33.62965 * 18 17 15 21 21 C 1.52995 * 117.49848 * 223.55385 * 20 18 17 22 22 C 1.52996 * 60.00406 * 252.51540 * 21 20 18 23 23 C 1.52995 * 117.49918 * 225.65223 * 17 15 14 24 24 C 1.53000 * 60.00335 * 107.48740 * 23 17 15 25 25 C 1.46924 * 118.74235 * 53.85899 * 14 13 12 26 26 H 0.97005 * 120.00155 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46524 * 58.63008 * 11 9 7 28 28 H 1.08998 * 109.46145 * 298.67067 * 11 9 7 29 29 H 1.08994 * 109.49381 * 301.41610 * 12 11 9 30 30 H 1.09000 * 109.52590 * 181.33234 * 12 11 9 31 31 H 1.08999 * 109.58756 * 185.57795 * 13 12 11 32 32 H 1.08997 * 109.59011 * 65.15591 * 13 12 11 33 33 H 1.08997 * 115.55230 * 9.26972 * 20 18 17 34 34 H 1.09001 * 117.50040 * 0.02562 * 21 20 18 35 35 H 1.09002 * 117.50291 * 145.02384 * 21 20 18 36 36 H 1.08998 * 117.49879 * 252.51552 * 22 21 20 37 37 H 1.09004 * 117.50141 * 107.49054 * 22 21 20 38 38 H 1.09003 * 117.49732 * 214.97680 * 23 17 15 39 39 H 1.08999 * 117.50041 * 359.97438 * 23 17 15 40 40 H 1.08997 * 117.49830 * 252.51325 * 24 23 17 41 41 H 1.09000 * 117.49964 * 107.48534 * 24 23 17 42 42 H 1.08998 * 109.58526 * 65.92875 * 25 14 13 43 43 H 1.08997 * 109.59058 * 186.35234 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6255 -2.5580 -0.8901 11 6 0.3705 -2.5806 1.2495 12 6 -0.4206 -3.8907 1.2336 13 6 0.5549 -5.0716 1.2519 14 7 1.4986 -4.9229 0.1356 15 6 1.6762 -5.9221 -0.7513 16 8 2.3907 -5.7559 -1.7171 17 6 0.9869 -7.2459 -0.5429 18 6 -0.4612 -7.2974 -0.9570 19 8 -1.2407 -7.9857 -0.3430 20 6 -0.9365 -6.4898 -2.1373 21 6 -2.2593 -5.7353 -1.9904 22 6 -2.1839 -6.9822 -2.8738 23 6 1.8212 -8.5143 -0.7321 24 6 1.4038 -8.0758 0.6730 25 6 2.2496 -3.6666 0.0080 26 1 -0.4850 0.8401 -0.0004 27 1 -0.3217 -1.7386 1.2615 28 1 0.9987 -2.5465 2.1396 29 1 -1.0303 -3.9364 0.3313 30 1 -1.0653 -3.9376 2.1112 31 1 0.0017 -6.0042 1.1409 32 1 1.1022 -5.0790 2.1945 33 1 -0.1528 -6.0212 -2.7325 34 1 -2.7857 -5.8227 -1.0399 35 1 -2.3462 -4.7698 -2.4888 36 1 -2.2210 -6.8370 -3.9535 37 1 -2.6609 -7.8902 -2.5047 38 1 1.3227 -9.3860 -1.1561 39 1 2.8686 -8.3914 -1.0077 40 1 2.1766 -7.6643 1.3222 41 1 0.6307 -8.6590 1.1734 42 1 2.9322 -3.5616 0.8512 43 1 2.8149 -3.6717 -0.9239 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000617293954.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:45:56 Heat of formation + Delta-G solvation = -25.310115 kcal Electronic energy + Delta-G solvation = -24534.335100 eV Core-core repulsion = 21160.081610 eV Total energy + Delta-G solvation = -3374.253490 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.85503 -39.17588 -37.11135 -36.45427 -35.56576 -33.46658 -31.36178 -30.25191 -27.24983 -25.20866 -24.87540 -22.79103 -22.46110 -22.43604 -21.67925 -20.61863 -19.24284 -18.20221 -17.31621 -16.46085 -15.88610 -15.71612 -15.51804 -14.86165 -14.63641 -14.25948 -14.07589 -13.85116 -13.47591 -13.20464 -12.82642 -12.75589 -12.60003 -12.15778 -11.99758 -11.73021 -11.59966 -11.26745 -11.02065 -10.89060 -10.80835 -10.70102 -10.60714 -10.54604 -10.31519 -9.97674 -9.84750 -9.74768 -9.50539 -9.32700 -8.86004 -8.42105 -7.96912 -6.04845 -4.12069 1.62062 2.78884 3.23931 3.28005 3.34946 3.38233 3.50052 3.74596 3.89885 4.39895 4.55411 4.66729 4.67180 4.76377 4.90811 4.94334 5.19093 5.24448 5.36150 5.42932 5.51538 5.55730 5.61864 5.67301 5.78181 5.83017 5.92082 5.97100 6.05373 6.07352 6.29792 6.34084 6.43780 6.60257 6.75505 6.89604 7.12745 7.28385 7.35133 7.65850 7.85138 7.93606 8.04040 8.33125 8.51320 8.91281 9.53012 11.00563 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020255 B = 0.004904 C = 0.004527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.074396 B = 5707.774575 C = 6183.258503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.515 4.515 8 H 0.057 0.943 9 C 0.042 3.958 10 H 0.030 0.970 11 C -0.112 4.112 12 C -0.134 4.134 13 C 0.109 3.891 14 N -0.592 5.592 15 C 0.552 3.448 16 O -0.540 6.540 17 C -0.215 4.215 18 C 0.438 3.562 19 O -0.453 6.453 20 C -0.220 4.220 21 C -0.140 4.140 22 C -0.151 4.151 23 C -0.119 4.119 24 C -0.141 4.141 25 C 0.116 3.884 26 H 0.260 0.740 27 H 0.096 0.904 28 H 0.036 0.964 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.129 0.871 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.107 0.893 41 H 0.113 0.887 42 H 0.057 0.943 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.333 -14.582 0.424 14.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.023 3.977 10 H 0.049 0.951 11 C -0.150 4.150 12 C -0.172 4.172 13 C -0.014 4.014 14 N -0.323 5.323 15 C 0.338 3.662 16 O -0.418 6.418 17 C -0.219 4.219 18 C 0.314 3.686 19 O -0.327 6.327 20 C -0.239 4.239 21 C -0.177 4.177 22 C -0.188 4.188 23 C -0.156 4.156 24 C -0.178 4.178 25 C -0.005 4.005 26 H 0.070 0.930 27 H 0.115 0.885 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.147 0.853 34 H 0.120 0.880 35 H 0.127 0.873 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.131 0.869 42 H 0.075 0.925 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.516 -14.707 0.256 14.922 hybrid contribution 0.516 1.114 0.028 1.228 sum -2.000 -13.592 0.284 13.741 Atomic orbital electron populations 1.69867 1.05889 1.26496 1.50453 1.24924 0.94847 0.99057 0.94900 0.86587 0.79861 0.83358 0.78161 1.20663 1.21250 1.19883 1.21066 0.92982 0.90261 1.51017 0.92491 1.19034 0.92814 0.91000 0.94849 0.95146 1.21637 0.99459 0.95329 0.98569 1.22003 0.97627 0.96544 1.01071 1.21766 0.91344 0.99140 0.89126 1.48236 1.41456 1.15700 1.26921 1.18949 0.81262 0.83380 0.82655 1.90677 1.40008 1.81861 1.29206 1.21968 0.96480 0.94516 1.08912 1.22436 0.86692 0.77409 0.82029 1.90361 1.55988 1.34916 1.51394 1.22734 0.94288 1.05957 1.00950 1.22964 0.95597 0.96799 1.02345 1.22955 0.97862 0.99166 0.98771 1.23001 1.00296 0.93436 0.98885 1.23139 1.03393 1.00695 0.90604 1.22164 0.95049 0.81716 1.01554 0.92959 0.88541 0.94564 0.92330 0.92435 0.91353 0.91786 0.85332 0.87980 0.87256 0.87767 0.87975 0.87640 0.86977 0.87423 0.86854 0.92456 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.48 11.31 55.43 0.63 -23.85 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.51 -13.63 8.57 -34.44 -0.30 -13.93 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.04 1.01 2.26 -91.43 -0.21 0.80 16 10 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 11 C -0.11 -2.46 4.96 -26.69 -0.13 -2.59 16 12 C -0.13 -2.40 6.08 -26.61 -0.16 -2.57 16 13 C 0.11 1.75 5.99 -3.71 -0.02 1.73 16 14 N -0.59 -10.76 2.97 -172.51 -0.51 -11.27 16 15 C 0.55 9.80 5.93 -10.98 -0.07 9.74 16 16 O -0.54 -11.23 16.41 5.55 0.09 -11.14 16 17 C -0.21 -3.06 1.21 -156.81 -0.19 -3.25 16 18 C 0.44 6.37 5.60 -29.03 -0.16 6.21 16 19 O -0.45 -6.95 16.33 6.00 0.10 -6.86 16 20 C -0.22 -3.10 5.67 -91.77 -0.52 -3.62 16 21 C -0.14 -1.80 10.14 -26.74 -0.27 -2.07 16 22 C -0.15 -1.72 10.05 -26.73 -0.27 -1.99 16 23 C -0.12 -1.37 9.86 -26.73 -0.26 -1.63 16 24 C -0.14 -1.62 8.65 -26.73 -0.23 -1.85 16 25 C 0.12 2.43 5.69 -3.49 -0.02 2.41 16 26 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 27 H 0.10 2.41 6.04 -51.93 -0.31 2.10 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 1.00 5.09 -51.93 -0.26 0.74 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.13 1.98 7.69 -51.93 -0.40 1.58 16 34 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.10 1.14 7.89 -51.93 -0.41 0.73 16 38 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.11 1.22 7.67 -51.93 -0.40 0.82 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.08 1.80 7.00 -51.93 -0.36 1.44 16 LS Contribution 348.97 15.07 5.26 5.26 Total: -1.00 -29.38 348.97 -9.13 -38.50 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.76 Total: 4.58 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -2.91 Total: -10.99 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.12 Total: -35.12 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: 0.19 Total: -18.00 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.38 -9.13 -38.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617293954.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.194 kcal (2) G-P(sol) polarization free energy of solvation -29.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds