Wall clock time and date at job start Tue Mar 31 2020 08:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99943 * 2 1 4 4 H 1.48496 * 109.47258 * 269.99950 * 3 2 1 5 5 H 1.48503 * 109.47134 * 29.99977 * 3 2 1 6 6 H 1.48504 * 109.47114 * 149.99888 * 3 2 1 7 7 C 1.37880 * 120.00030 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99738 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00048 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.49363 * 60.06434 * 9 7 2 11 11 C 1.53035 * 109.49805 * 300.00080 * 9 7 2 12 12 C 1.53047 * 109.53962 * 178.64926 * 11 9 7 13 13 C 1.53186 * 109.30897 * 61.36439 * 12 11 9 14 14 N 1.46924 * 108.77830 * 305.36701 * 13 12 11 15 15 C 1.34781 * 120.63057 * 233.58745 * 14 13 12 16 16 O 1.21285 * 120.00060 * 175.15056 * 15 14 13 17 17 C 1.50698 * 120.00115 * 355.15427 * 15 14 13 18 18 C 1.50701 * 115.56558 * 79.95852 * 17 15 14 19 19 O 1.20759 * 120.00168 * 213.63693 * 18 17 15 20 20 C 1.50704 * 119.99492 * 33.62965 * 18 17 15 21 21 C 1.52995 * 117.49848 * 223.55385 * 20 18 17 22 22 C 1.52996 * 60.00406 * 252.51540 * 21 20 18 23 23 C 1.52995 * 117.49918 * 225.65223 * 17 15 14 24 24 C 1.53000 * 60.00335 * 107.48740 * 23 17 15 25 25 C 1.46924 * 118.74235 * 53.85899 * 14 13 12 26 26 H 0.97005 * 120.00155 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46524 * 58.63008 * 11 9 7 28 28 H 1.08998 * 109.46145 * 298.67067 * 11 9 7 29 29 H 1.08994 * 109.49381 * 301.41610 * 12 11 9 30 30 H 1.09000 * 109.52590 * 181.33234 * 12 11 9 31 31 H 1.08999 * 109.58756 * 185.57795 * 13 12 11 32 32 H 1.08997 * 109.59011 * 65.15591 * 13 12 11 33 33 H 1.08997 * 115.55230 * 9.26972 * 20 18 17 34 34 H 1.09001 * 117.50040 * 0.02562 * 21 20 18 35 35 H 1.09002 * 117.50291 * 145.02384 * 21 20 18 36 36 H 1.08998 * 117.49879 * 252.51552 * 22 21 20 37 37 H 1.09004 * 117.50141 * 107.49054 * 22 21 20 38 38 H 1.09003 * 117.49732 * 214.97680 * 23 17 15 39 39 H 1.08999 * 117.50041 * 359.97438 * 23 17 15 40 40 H 1.08997 * 117.49830 * 252.51325 * 24 23 17 41 41 H 1.09000 * 117.49964 * 107.48534 * 24 23 17 42 42 H 1.08998 * 109.58526 * 65.92875 * 25 14 13 43 43 H 1.08997 * 109.59058 * 186.35234 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6255 -2.5580 -0.8901 11 6 0.3705 -2.5806 1.2495 12 6 -0.4206 -3.8907 1.2336 13 6 0.5549 -5.0716 1.2519 14 7 1.4986 -4.9229 0.1356 15 6 1.6762 -5.9221 -0.7513 16 8 2.3907 -5.7559 -1.7171 17 6 0.9869 -7.2459 -0.5429 18 6 -0.4612 -7.2974 -0.9570 19 8 -1.2407 -7.9857 -0.3430 20 6 -0.9365 -6.4898 -2.1373 21 6 -2.2593 -5.7353 -1.9904 22 6 -2.1839 -6.9822 -2.8738 23 6 1.8212 -8.5143 -0.7321 24 6 1.4038 -8.0758 0.6730 25 6 2.2496 -3.6666 0.0080 26 1 -0.4850 0.8401 -0.0004 27 1 -0.3217 -1.7386 1.2615 28 1 0.9987 -2.5465 2.1396 29 1 -1.0303 -3.9364 0.3313 30 1 -1.0653 -3.9376 2.1112 31 1 0.0017 -6.0042 1.1409 32 1 1.1022 -5.0790 2.1945 33 1 -0.1528 -6.0212 -2.7325 34 1 -2.7857 -5.8227 -1.0399 35 1 -2.3462 -4.7698 -2.4888 36 1 -2.2210 -6.8370 -3.9535 37 1 -2.6609 -7.8902 -2.5047 38 1 1.3227 -9.3860 -1.1561 39 1 2.8686 -8.3914 -1.0077 40 1 2.1766 -7.6643 1.3222 41 1 0.6307 -8.6590 1.1734 42 1 2.9322 -3.5616 0.8512 43 1 2.8149 -3.6717 -0.9239 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000617293954.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:45:49 Heat of formation + Delta-G solvation = -40.528091 kcal Electronic energy + Delta-G solvation = -24534.995001 eV Core-core repulsion = 21160.081610 eV Total energy + Delta-G solvation = -3374.913391 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 8.88 seconds Orbital eigenvalues (eV) -42.06545 -40.50358 -38.58656 -37.60660 -36.68210 -35.32371 -33.04761 -32.00023 -28.41473 -27.07240 -26.35517 -24.00003 -23.52434 -23.45332 -23.21100 -21.95025 -20.79399 -19.51683 -18.68220 -18.24100 -17.30406 -17.02474 -16.67754 -16.54757 -15.85686 -15.54109 -15.51263 -15.12780 -15.01479 -14.60733 -14.54127 -14.16529 -13.79723 -13.75514 -13.59548 -12.88715 -12.77735 -12.59403 -12.58409 -12.54417 -12.26958 -12.04046 -11.87125 -11.74396 -11.64117 -11.59263 -11.57343 -11.28109 -10.92836 -10.79839 -10.65513 -10.43404 -9.55526 -8.10012 -6.24879 0.52564 1.41471 1.41726 1.43587 1.52541 1.91925 2.43042 2.45566 2.69495 2.86460 3.16980 3.32899 3.59857 3.70553 3.73938 3.89463 3.94361 4.01575 4.10948 4.18916 4.31479 4.50748 4.51838 4.57558 4.61468 4.63492 4.76419 4.79958 4.81358 4.84632 4.90577 4.93587 5.06333 5.08838 5.09435 5.23727 5.45005 5.51445 5.61532 5.92944 6.12414 6.21418 6.34072 6.45570 6.84121 7.08072 7.43322 8.93654 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020255 B = 0.004904 C = 0.004527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.074396 B = 5707.774575 C = 6183.258503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.019 3.981 3 Si 0.953 3.047 4 H -0.280 1.280 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.536 4.536 8 H 0.054 0.946 9 C 0.044 3.956 10 H -0.012 1.012 11 C -0.103 4.103 12 C -0.127 4.127 13 C 0.114 3.886 14 N -0.595 5.595 15 C 0.553 3.447 16 O -0.578 6.578 17 C -0.236 4.236 18 C 0.443 3.557 19 O -0.460 6.460 20 C -0.243 4.243 21 C -0.146 4.146 22 C -0.125 4.125 23 C -0.107 4.107 24 C -0.121 4.121 25 C 0.129 3.871 26 H 0.261 0.739 27 H 0.064 0.936 28 H 0.039 0.961 29 H 0.043 0.957 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.123 0.877 37 H 0.111 0.889 38 H 0.125 0.875 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.128 0.872 42 H 0.068 0.932 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.428 -16.303 1.599 16.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.181 4.181 3 Si 0.779 3.221 4 H -0.206 1.206 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.575 4.575 8 H 0.072 0.928 9 C 0.025 3.975 10 H 0.006 0.994 11 C -0.142 4.142 12 C -0.165 4.165 13 C -0.008 4.008 14 N -0.326 5.326 15 C 0.341 3.659 16 O -0.458 6.458 17 C -0.241 4.241 18 C 0.320 3.680 19 O -0.335 6.335 20 C -0.262 4.262 21 C -0.184 4.184 22 C -0.161 4.161 23 C -0.145 4.145 24 C -0.158 4.158 25 C 0.007 3.993 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.125 0.875 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.141 0.859 37 H 0.130 0.870 38 H 0.143 0.857 39 H 0.130 0.870 40 H 0.136 0.864 41 H 0.146 0.854 42 H 0.086 0.914 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.618 -16.445 1.445 16.714 hybrid contribution 0.544 1.666 -0.397 1.797 sum -2.073 -14.779 1.049 14.961 Atomic orbital electron populations 1.70003 1.07076 1.27164 1.50923 1.25656 0.95640 1.02161 0.94602 0.85634 0.78908 0.79526 0.78051 1.20635 1.20718 1.19113 1.21424 0.93114 0.91771 1.51155 0.92807 1.18924 0.93024 0.91547 0.94046 0.99356 1.21416 0.98784 0.96550 0.97407 1.21905 0.97778 0.95124 1.01695 1.21881 0.90799 0.98908 0.89235 1.48245 1.41642 1.14818 1.27873 1.19495 0.80590 0.84338 0.81523 1.90650 1.41773 1.82760 1.30599 1.21852 0.96417 0.93301 1.12488 1.22373 0.86657 0.77126 0.81805 1.90355 1.56003 1.35428 1.51721 1.22724 0.94551 1.07228 1.01709 1.22986 0.94930 0.97470 1.02968 1.23076 0.95014 0.98460 0.99586 1.23171 0.99980 0.92252 0.99058 1.23303 1.03460 0.98839 0.90173 1.21748 0.94420 0.82294 1.00846 0.92972 0.91767 0.94191 0.93798 0.89626 0.89319 0.89406 0.87502 0.87953 0.87688 0.85893 0.87047 0.85694 0.87012 0.86429 0.85379 0.91407 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.61 11.31 21.45 0.24 -51.37 16 2 C 0.02 1.02 5.30 84.66 0.45 1.46 16 3 Si 0.95 43.10 29.54 68.60 2.03 45.12 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.54 -29.17 8.57 25.60 0.22 -28.95 16 8 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 9 C 0.04 2.17 2.26 -11.32 -0.03 2.14 16 10 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 11 C -0.10 -4.60 4.96 30.62 0.15 -4.45 16 12 C -0.13 -4.43 6.08 30.67 0.19 -4.25 16 13 C 0.11 3.41 5.99 86.36 0.52 3.93 16 14 N -0.60 -21.41 2.97 -818.09 -2.43 -23.84 16 15 C 0.55 19.49 5.93 87.66 0.52 20.01 16 16 O -0.58 -24.59 16.41 -3.05 -0.05 -24.64 16 17 C -0.24 -6.33 1.21 -53.67 -0.07 -6.40 16 18 C 0.44 12.20 5.60 29.10 0.16 12.36 16 19 O -0.46 -13.00 16.33 -1.45 -0.02 -13.02 16 20 C -0.24 -6.76 5.67 -11.54 -0.07 -6.82 16 21 C -0.15 -3.73 10.14 30.59 0.31 -3.42 16 22 C -0.12 -2.66 10.05 30.59 0.31 -2.35 16 23 C -0.11 -2.20 9.86 30.59 0.30 -1.90 16 24 C -0.12 -2.36 8.65 30.60 0.26 -2.10 16 25 C 0.13 5.52 5.69 86.51 0.49 6.02 16 26 H 0.26 14.08 8.31 -92.70 -0.77 13.31 16 27 H 0.06 3.29 6.04 -2.38 -0.01 3.28 16 28 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.09 2.35 5.09 -2.39 -0.01 2.34 16 32 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.11 3.43 7.69 -2.39 -0.02 3.41 16 34 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.11 2.21 7.89 -2.38 -0.02 2.19 16 38 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.13 2.20 7.67 -2.39 -0.02 2.18 16 42 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 43 H 0.06 2.72 7.00 -2.39 -0.02 2.70 16 Total: -1.00 -65.30 348.97 4.49 -60.81 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 1.00 Total: 21.65 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 3.73 Total: -14.72 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -2.18 Total: -75.21 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -0.07 Total: -37.66 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -65.30 4.49 -60.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617293954.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.282 kcal (2) G-P(sol) polarization free energy of solvation -65.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.88 seconds