Wall clock time and date at job start Tue Mar 31 2020 08:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00541 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00100 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 H 1.09003 * 109.50002 * 59.94196 * 9 7 2 11 11 C 1.53038 * 109.50391 * 299.83860 * 9 7 2 12 12 C 1.53034 * 109.54055 * 178.68438 * 11 9 7 13 13 C 1.53195 * 109.31195 * 61.36685 * 12 11 9 14 14 N 1.46924 * 108.77319 * 305.36421 * 13 12 11 15 15 C 1.34780 * 120.62636 * 233.58452 * 14 13 12 16 16 O 1.21284 * 119.99842 * 180.02562 * 15 14 13 17 17 C 1.50693 * 119.99998 * 0.02573 * 15 14 13 18 18 H 1.08994 * 110.37122 * 302.34926 * 17 15 14 19 19 C 1.54609 * 110.41762 * 64.83547 * 17 15 14 20 20 C 1.55983 * 104.46558 * 118.44063 * 19 17 15 21 21 H 1.09000 * 116.70511 * 161.25504 * 20 19 17 22 22 C 1.55962 * 104.30993 * 290.79868 * 20 19 17 23 23 C 1.54048 * 105.05839 * 70.11269 * 22 20 19 24 24 O 1.20756 * 128.23974 * 179.55789 * 23 22 20 25 25 C 1.53522 * 104.42966 * 0.10284 * 23 22 20 26 26 H 1.09001 * 115.84293 * 160.54756 * 25 23 22 27 27 C 1.56926 * 101.58899 * 33.74351 * 25 23 22 28 28 C 1.46926 * 118.73992 * 53.61071 * 14 13 12 29 29 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.45766 * 298.70780 * 11 9 7 31 31 H 1.09004 * 109.45620 * 58.66138 * 11 9 7 32 32 H 1.09000 * 109.49772 * 301.41465 * 12 11 9 33 33 H 1.08999 * 109.49668 * 181.31636 * 12 11 9 34 34 H 1.09002 * 109.58090 * 185.57628 * 13 12 11 35 35 H 1.08996 * 109.58333 * 65.15237 * 13 12 11 36 36 H 1.08998 * 110.43811 * 237.19345 * 19 17 15 37 37 H 1.09008 * 110.43235 * 359.70235 * 19 17 15 38 38 H 1.08997 * 110.35938 * 189.22778 * 22 20 19 39 39 H 1.08998 * 110.35727 * 311.42591 * 22 20 19 40 40 H 1.08996 * 112.08855 * 63.06389 * 27 25 23 41 41 H 1.08997 * 112.08417 * 189.74388 * 27 25 23 42 42 H 1.09000 * 109.58215 * 186.60423 * 28 14 13 43 43 H 1.08997 * 109.58713 * 66.18176 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 1 0.6196 -2.5587 -0.8813 11 6 0.3792 -2.5802 1.2604 12 6 -0.4113 -3.8905 1.2508 13 6 0.5648 -5.0712 1.2631 14 7 1.5006 -4.9227 0.1402 15 6 1.6724 -5.9225 -0.7472 16 8 2.4482 -5.7879 -1.6697 17 6 0.9005 -7.2076 -0.5932 18 1 1.0992 -7.6552 0.3805 19 6 -0.6137 -6.9521 -0.7733 20 6 -1.0094 -7.8129 -2.0125 21 1 -2.0691 -8.0365 -2.1353 22 6 -0.3143 -7.1015 -3.2138 23 6 1.1908 -7.3651 -3.0186 24 8 2.1089 -7.0075 -3.7167 25 6 1.2690 -8.2036 -1.7350 26 1 2.1894 -8.7700 -1.5928 27 6 -0.0530 -9.0441 -1.8264 28 6 2.2460 -3.6640 0.0034 29 1 -0.4850 0.8401 0.0004 30 1 1.0137 -2.5453 2.1461 31 1 -0.3132 -1.7385 1.2766 32 1 -1.0274 -3.9372 0.3529 33 1 -1.0494 -3.9369 2.1333 34 1 0.0112 -6.0041 1.1566 35 1 1.1186 -5.0776 2.2019 36 1 -1.1627 -7.2805 0.1093 37 1 -0.8010 -5.8961 -0.9680 38 1 -0.6573 -7.5273 -4.1567 39 1 -0.5141 -6.0303 -3.1873 40 1 -0.0602 -9.7035 -2.6942 41 1 -0.2581 -9.5869 -0.9037 42 1 2.8016 -3.6685 -0.9344 43 1 2.9369 -3.5558 0.8393 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000617293972.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:46:08 Heat of formation + Delta-G solvation = -89.259423 kcal Electronic energy + Delta-G solvation = -24784.366665 eV Core-core repulsion = 21407.340126 eV Total energy + Delta-G solvation = -3377.026540 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.38807 -40.29611 -38.43518 -38.21313 -35.42816 -33.16385 -32.34597 -31.05788 -29.75870 -28.14641 -27.00192 -26.15253 -23.44576 -23.09322 -21.58541 -21.10417 -20.16527 -19.26952 -18.51262 -17.90332 -17.54039 -17.11748 -16.63728 -16.32314 -15.89755 -15.50189 -15.13451 -14.83629 -14.64798 -14.62305 -14.40279 -13.86375 -13.75878 -13.60874 -13.47862 -13.03791 -12.91594 -12.74062 -12.56843 -12.44404 -12.27421 -12.09315 -11.89456 -11.84904 -11.67793 -11.57970 -11.44625 -11.21081 -10.87833 -10.62977 -10.45437 -10.14618 -9.49809 -8.15235 -6.30172 1.18951 1.35675 1.38109 1.49400 1.62717 2.08975 2.40277 3.11242 3.11397 3.36532 3.42791 3.61301 3.82837 3.98700 4.12054 4.15669 4.24058 4.27375 4.34784 4.39103 4.48237 4.52632 4.62091 4.74497 4.77981 4.81266 4.86464 4.93465 4.95144 5.07409 5.09644 5.10795 5.19432 5.23507 5.31135 5.36185 5.45775 5.56617 5.58508 5.90076 6.11049 6.31304 6.56117 6.77121 6.79346 7.22729 7.37946 8.88747 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024535 B = 0.004602 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.967365 B = 6083.037068 C = 6461.915854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.019 3.981 3 Si 0.954 3.046 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.541 4.541 8 H 0.047 0.953 9 C 0.044 3.956 10 H -0.018 1.018 11 C -0.106 4.106 12 C -0.125 4.125 13 C 0.105 3.895 14 N -0.604 5.604 15 C 0.488 3.512 16 O -0.588 6.588 17 C -0.097 4.097 18 H 0.147 0.853 19 C -0.120 4.120 20 C -0.075 4.075 21 H 0.153 0.847 22 C -0.187 4.187 23 C 0.354 3.646 24 O -0.484 6.484 25 C -0.144 4.144 26 H 0.110 0.890 27 C -0.097 4.097 28 C 0.130 3.870 29 H 0.263 0.737 30 H 0.036 0.964 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.094 0.906 34 H 0.124 0.876 35 H 0.080 0.920 36 H 0.129 0.871 37 H 0.050 0.950 38 H 0.111 0.889 39 H 0.065 0.935 40 H 0.089 0.911 41 H 0.123 0.877 42 H 0.040 0.960 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.247 -20.758 4.493 22.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.180 4.180 3 Si 0.779 3.221 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.580 4.580 8 H 0.065 0.935 9 C 0.025 3.975 10 H 0.001 0.999 11 C -0.144 4.144 12 C -0.163 4.163 13 C -0.016 4.016 14 N -0.335 5.335 15 C 0.278 3.722 16 O -0.469 6.469 17 C -0.118 4.118 18 H 0.165 0.835 19 C -0.157 4.157 20 C -0.092 4.092 21 H 0.170 0.830 22 C -0.224 4.224 23 C 0.231 3.769 24 O -0.358 6.358 25 C -0.163 4.163 26 H 0.128 0.872 27 C -0.134 4.134 28 C 0.007 3.993 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.112 0.888 34 H 0.141 0.859 35 H 0.098 0.902 36 H 0.147 0.853 37 H 0.069 0.931 38 H 0.129 0.871 39 H 0.084 0.916 40 H 0.108 0.892 41 H 0.141 0.859 42 H 0.059 0.941 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.504 -20.352 3.668 21.999 hybrid contribution 1.119 2.057 -0.538 2.403 sum -6.384 -18.295 3.131 19.628 Atomic orbital electron populations 1.70004 1.06972 1.27208 1.50827 1.25656 0.95728 1.02147 0.94452 0.85572 0.78919 0.79712 0.77870 1.19655 1.20825 1.19682 1.21465 0.92910 0.92182 1.51423 0.93490 1.18844 0.93051 0.91383 0.94233 0.99936 1.21415 0.98713 0.97529 0.96726 1.21904 0.97750 0.94547 1.02141 1.22140 0.90808 1.00300 0.88329 1.48336 1.42635 1.14461 1.28052 1.21755 0.82728 0.86702 0.81012 1.90811 1.39932 1.82479 1.33686 1.22496 0.96917 0.90201 1.02163 0.83534 1.22946 0.91142 1.00221 1.01413 1.23679 1.00686 0.94109 0.90763 0.82962 1.23656 0.93574 1.02074 1.03142 1.26424 0.90806 0.75188 0.84510 1.90341 1.47133 1.46843 1.51500 1.24186 1.02240 0.96837 0.93067 0.87204 1.23584 0.89202 0.95601 1.05011 1.21487 0.94642 0.83500 0.99644 0.92827 0.94505 0.91968 0.93434 0.88769 0.85861 0.90206 0.85281 0.93136 0.87109 0.91603 0.89247 0.85927 0.94134 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.65 11.33 21.45 0.24 -52.40 16 2 C 0.02 1.10 5.30 84.66 0.45 1.55 16 3 Si 0.95 44.65 29.54 68.60 2.03 46.68 16 4 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.54 -31.07 8.56 25.60 0.22 -30.85 16 8 H 0.05 2.71 7.74 -2.92 -0.02 2.68 16 9 C 0.04 2.29 2.25 -11.46 -0.03 2.26 16 10 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 11 C -0.11 -4.71 4.96 30.62 0.15 -4.56 16 12 C -0.13 -3.97 6.08 30.67 0.19 -3.79 16 13 C 0.11 2.73 5.78 86.36 0.50 3.23 16 14 N -0.60 -21.87 2.97 -818.91 -2.43 -24.31 16 15 C 0.49 17.51 6.48 87.65 0.57 18.07 16 16 O -0.59 -27.93 12.41 19.06 0.24 -27.69 16 17 C -0.10 -2.06 2.15 -9.98 -0.02 -2.08 16 18 H 0.15 1.99 7.85 -2.39 -0.02 1.97 16 19 C -0.12 -1.88 4.13 32.18 0.13 -1.74 16 20 C -0.07 -0.94 5.25 -7.32 -0.04 -0.98 16 21 H 0.15 0.90 8.14 -2.39 -0.02 0.88 16 22 C -0.19 -4.34 6.15 31.97 0.20 -4.14 16 23 C 0.35 11.45 5.33 31.12 0.17 11.61 16 24 O -0.48 -21.56 16.41 20.66 0.34 -21.23 16 25 C -0.14 -3.14 4.62 -8.23 -0.04 -3.18 16 26 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 27 C -0.10 -1.02 6.46 33.38 0.22 -0.80 16 28 C 0.13 6.03 5.66 86.36 0.49 6.52 16 29 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 30 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.06 3.19 6.06 -2.38 -0.01 3.18 16 32 H 0.05 1.61 8.04 -2.39 -0.02 1.59 16 33 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.12 2.03 4.53 -2.39 -0.01 2.02 16 35 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.13 0.91 7.69 -2.39 -0.02 0.89 16 37 H 0.05 1.16 7.03 -2.38 -0.02 1.14 16 38 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.07 1.91 7.84 -2.39 -0.02 1.89 16 40 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.04 2.14 7.01 -2.39 -0.02 2.13 16 43 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -83.11 326.66 4.56 -78.55 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 1.00 Total: 9.26 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: 3.15 Total: -8.87 kcal Atomic # 7 Polarization: -74.52 SS G_CDS: -2.19 Total: -76.71 kcal Atomic # 8 Polarization: -49.49 SS G_CDS: 0.58 Total: -48.92 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -83.11 4.56 -78.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617293972.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.705 kcal (2) G-P(sol) polarization free energy of solvation -83.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds