Wall clock time and date at job start Tue Mar 31 2020 08:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99680 * 2 1 4 4 H 1.48507 * 109.46802 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47362 * 299.99520 * 3 2 1 6 6 H 1.48505 * 109.47148 * 60.00196 * 3 2 1 7 7 C 1.37876 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00194 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99820 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.52075 * 59.92074 * 9 7 2 11 11 C 1.53037 * 109.49946 * 299.83845 * 9 7 2 12 12 C 1.53041 * 109.53846 * 178.68531 * 11 9 7 13 13 C 1.52760 * 109.38571 * 61.23684 * 12 11 9 14 14 N 1.46933 * 109.00744 * 305.59221 * 13 12 11 15 15 C 1.34778 * 120.62621 * 233.57873 * 14 13 12 16 16 O 1.21280 * 120.00050 * 179.71513 * 15 14 13 17 17 C 1.50699 * 120.00358 * 359.72297 * 15 14 13 18 18 H 1.09001 * 110.46213 * 60.95992 * 17 15 14 19 19 C 1.54609 * 110.41342 * 298.54536 * 17 15 14 20 20 C 1.55976 * 104.57098 * 240.95271 * 19 17 15 21 21 H 1.09005 * 116.08014 * 161.64973 * 20 19 17 22 22 C 1.55959 * 104.30964 * 290.73197 * 20 19 17 23 23 C 1.52171 * 104.87102 * 70.38103 * 22 20 19 24 24 O 1.20761 * 127.32623 * 179.66533 * 23 22 20 25 25 C 1.53524 * 105.34265 * 359.69785 * 23 22 20 26 26 H 1.09005 * 115.83840 * 160.28621 * 25 23 22 27 27 C 1.56923 * 100.83922 * 34.04347 * 25 23 22 28 28 C 1.46923 * 118.73967 * 53.30761 * 14 13 12 29 29 H 0.96999 * 120.00040 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.45716 * 298.70323 * 11 9 7 31 31 H 1.08992 * 109.46108 * 58.67877 * 11 9 7 32 32 H 1.09003 * 109.49838 * 181.31311 * 12 11 9 33 33 H 1.09007 * 109.49516 * 301.41534 * 12 11 9 34 34 H 1.09000 * 109.51081 * 185.70924 * 13 12 11 35 35 H 1.09002 * 109.43393 * 65.42587 * 13 12 11 36 36 H 1.09002 * 110.43929 * 122.14483 * 19 17 15 37 37 H 1.08998 * 110.43585 * 359.75959 * 19 17 15 38 38 H 1.09000 * 110.36185 * 189.22959 * 22 20 19 39 39 H 1.08996 * 110.35834 * 311.53162 * 22 20 19 40 40 H 1.08998 * 112.08720 * 189.93871 * 27 25 23 41 41 H 1.08999 * 112.08837 * 63.26192 * 27 25 23 42 42 H 1.08996 * 109.58668 * 66.43258 * 28 14 13 43 43 H 1.09002 * 109.58477 * 186.85739 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6234 -2.5573 -0.8887 11 6 0.3736 -2.5823 1.2516 12 6 -0.4168 -3.8928 1.2361 13 6 0.5550 -5.0713 1.2475 14 7 1.5002 -4.9229 0.1323 15 6 1.6754 -5.9208 -0.7566 16 8 2.4546 -5.7842 -1.6758 17 6 0.9028 -7.2062 -0.6085 18 1 -0.1687 -7.0162 -0.6710 19 6 1.2513 -7.8934 0.7319 20 6 1.8572 -9.2707 0.3209 21 1 2.4470 -9.7811 1.0823 22 6 0.6474 -10.0667 -0.2580 23 6 0.3251 -9.3819 -1.5782 24 8 -0.5431 -9.6777 -2.3636 25 6 1.3392 -8.2356 -1.6993 26 1 1.4929 -7.8415 -2.7040 27 6 2.5938 -8.8772 -1.0088 28 6 2.2461 -3.6639 0.0011 29 1 -0.4850 0.8400 -0.0004 30 1 1.0040 -2.5490 2.1401 31 1 -0.3191 -1.7409 1.2659 32 1 -1.0590 -3.9407 2.1156 33 1 -1.0288 -3.9379 0.3352 34 1 -0.0004 -6.0023 1.1344 35 1 1.1015 -5.0816 2.1906 36 1 0.3522 -8.0367 1.3312 37 1 1.9846 -7.3041 1.2824 38 1 0.9245 -11.1070 -0.4281 39 1 -0.2050 -10.0062 0.4186 40 1 3.3856 -8.1478 -0.8383 41 1 2.9575 -9.7506 -1.5499 42 1 2.9332 -3.5572 0.8404 43 1 2.8060 -3.6667 -0.9341 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000617293974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:46:42 Heat of formation + Delta-G solvation = -74.979913 kcal Electronic energy + Delta-G solvation = -24229.637363 eV Core-core repulsion = 20853.230029 eV Total energy + Delta-G solvation = -3376.407334 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.37281 -39.29936 -37.59010 -36.64429 -33.60270 -31.53657 -30.98629 -29.84701 -28.95607 -27.27148 -25.10672 -24.87460 -22.38480 -21.75656 -20.50555 -19.83256 -18.71715 -18.29594 -17.09069 -16.65535 -16.32763 -15.72033 -15.23802 -14.88792 -14.68623 -14.46578 -13.98201 -13.70764 -13.54138 -13.19853 -12.95844 -12.79356 -12.66188 -12.20225 -12.11205 -11.87764 -11.62660 -11.34486 -11.26896 -11.04762 -10.99263 -10.92228 -10.80787 -10.72095 -10.30947 -9.98239 -9.83380 -9.61518 -9.49586 -9.22523 -8.84435 -8.41815 -7.94775 -6.04608 -4.11822 1.72684 2.96249 3.27090 3.35243 3.38242 3.44721 3.86085 4.12155 4.15374 4.40512 4.42579 4.69227 4.77200 4.86439 4.99373 5.03601 5.20724 5.26449 5.36779 5.39023 5.45800 5.54961 5.58043 5.69515 5.74436 5.76954 5.87055 5.93837 5.97783 6.07838 6.28987 6.35813 6.43931 6.61898 6.76735 6.92518 7.12495 7.29468 7.30889 7.66380 7.87660 7.96630 8.04448 8.34122 8.58721 8.92129 9.53430 11.00984 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032119 B = 0.003772 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.548743 B = 7421.645637 C = 7593.738880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.058 0.942 9 C 0.039 3.961 10 H 0.029 0.971 11 C -0.112 4.112 12 C -0.137 4.137 13 C 0.108 3.892 14 N -0.600 5.600 15 C 0.520 3.480 16 O -0.546 6.546 17 C -0.105 4.105 18 H 0.099 0.901 19 C -0.118 4.118 20 C -0.096 4.096 21 H 0.115 0.885 22 C -0.178 4.178 23 C 0.367 3.633 24 O -0.442 6.442 25 C -0.130 4.130 26 H 0.124 0.876 27 C -0.117 4.117 28 C 0.117 3.883 29 H 0.260 0.740 30 H 0.036 0.964 31 H 0.095 0.905 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.055 0.945 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.014 -18.332 5.113 19.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.553 4.553 8 H 0.076 0.924 9 C 0.020 3.980 10 H 0.047 0.953 11 C -0.150 4.150 12 C -0.175 4.175 13 C -0.016 4.016 14 N -0.332 5.332 15 C 0.307 3.693 16 O -0.425 6.425 17 C -0.126 4.126 18 H 0.117 0.883 19 C -0.156 4.156 20 C -0.115 4.115 21 H 0.133 0.867 22 C -0.216 4.216 23 C 0.242 3.758 24 O -0.314 6.314 25 C -0.150 4.150 26 H 0.142 0.858 27 C -0.154 4.154 28 C -0.004 4.004 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.113 0.887 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.073 0.927 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.804 -18.272 4.222 18.771 hybrid contribution 0.239 1.096 0.147 1.131 sum 1.043 -17.177 4.369 17.754 Atomic orbital electron populations 1.69883 1.05909 1.26398 1.50557 1.24938 0.94852 0.99112 0.94910 0.86526 0.80189 0.83662 0.77568 1.19715 1.21010 1.21039 1.21109 0.93025 0.90258 1.50863 0.92416 1.18980 0.92972 0.91224 0.94801 0.95296 1.21625 0.99445 0.95357 0.98572 1.21951 0.97757 0.96813 1.01019 1.21755 0.91388 0.99128 0.89284 1.48264 1.41894 1.15952 1.27086 1.20120 0.82850 0.84397 0.81953 1.90663 1.37882 1.81502 1.32404 1.22266 1.01155 0.93299 0.95906 0.88305 1.22859 1.01708 0.95701 0.95299 1.23599 0.95343 0.95121 0.97398 0.86747 1.23195 1.00301 1.01105 0.96985 1.25642 0.80821 0.83561 0.85804 1.90412 1.29877 1.64930 1.46217 1.24082 0.95754 0.94495 1.00639 0.85786 1.23564 0.96533 1.00554 0.94766 1.22010 0.95066 0.81789 1.01493 0.93016 0.94559 0.88655 0.92400 0.92427 0.90999 0.91859 0.90240 0.90120 0.88376 0.88267 0.89248 0.90548 0.92661 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.76 11.32 55.43 0.63 -24.13 16 2 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -13.74 8.56 -34.44 -0.29 -14.04 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.04 0.95 2.25 -91.65 -0.21 0.74 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.45 4.96 -26.69 -0.13 -2.58 16 12 C -0.14 -2.35 6.06 -26.83 -0.16 -2.51 16 13 C 0.11 1.55 5.31 -3.93 -0.02 1.53 16 14 N -0.60 -10.49 2.96 -173.03 -0.51 -11.00 16 15 C 0.52 8.79 6.62 -10.98 -0.07 8.72 16 16 O -0.55 -11.11 15.12 5.56 0.08 -11.03 16 17 C -0.10 -1.30 1.79 -89.21 -0.16 -1.46 16 18 H 0.10 1.20 7.65 -51.93 -0.40 0.80 16 19 C -0.12 -1.06 4.16 -24.29 -0.10 -1.16 16 20 C -0.10 -0.71 5.24 -85.27 -0.45 -1.16 16 21 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 22 C -0.18 -1.35 6.10 -25.57 -0.16 -1.51 16 23 C 0.37 4.20 7.15 -26.88 -0.19 4.01 16 24 O -0.44 -6.61 17.99 6.00 0.11 -6.50 16 25 C -0.13 -1.57 4.01 -86.51 -0.35 -1.92 16 26 H 0.12 1.73 7.83 -51.93 -0.41 1.32 16 27 C -0.12 -1.13 6.33 -22.43 -0.14 -1.27 16 28 C 0.12 2.46 5.66 -3.71 -0.02 2.44 16 29 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.10 2.39 6.05 -51.93 -0.31 2.07 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 34 H 0.07 0.82 4.83 -51.93 -0.25 0.57 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.57 7.44 -51.93 -0.39 0.18 16 37 H 0.08 0.78 7.19 -51.93 -0.37 0.41 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 0.65 7.84 -51.93 -0.41 0.24 16 40 H 0.09 1.01 7.77 -51.93 -0.40 0.61 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.08 1.80 7.01 -51.93 -0.36 1.43 16 LS Contribution 330.71 15.07 4.98 4.98 Total: -1.00 -30.97 330.71 -8.93 -39.90 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -6.65 Total: 0.43 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -2.55 Total: -8.55 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.12 Total: -35.13 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: 0.19 Total: -17.53 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.97 -8.93 -39.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617293974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.084 kcal (2) G-P(sol) polarization free energy of solvation -30.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds