Wall clock time and date at job start Tue Mar 31 2020 08:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99680 * 2 1 4 4 H 1.48507 * 109.46802 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47362 * 299.99520 * 3 2 1 6 6 H 1.48505 * 109.47148 * 60.00196 * 3 2 1 7 7 C 1.37876 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00194 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99820 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.52075 * 59.92074 * 9 7 2 11 11 C 1.53037 * 109.49946 * 299.83845 * 9 7 2 12 12 C 1.53041 * 109.53846 * 178.68531 * 11 9 7 13 13 C 1.52760 * 109.38571 * 61.23684 * 12 11 9 14 14 N 1.46933 * 109.00744 * 305.59221 * 13 12 11 15 15 C 1.34778 * 120.62621 * 233.57873 * 14 13 12 16 16 O 1.21280 * 120.00050 * 179.71513 * 15 14 13 17 17 C 1.50699 * 120.00358 * 359.72297 * 15 14 13 18 18 H 1.09001 * 110.46213 * 60.95992 * 17 15 14 19 19 C 1.54609 * 110.41342 * 298.54536 * 17 15 14 20 20 C 1.55976 * 104.57098 * 240.95271 * 19 17 15 21 21 H 1.09005 * 116.08014 * 161.64973 * 20 19 17 22 22 C 1.55959 * 104.30964 * 290.73197 * 20 19 17 23 23 C 1.52171 * 104.87102 * 70.38103 * 22 20 19 24 24 O 1.20761 * 127.32623 * 179.66533 * 23 22 20 25 25 C 1.53524 * 105.34265 * 359.69785 * 23 22 20 26 26 H 1.09005 * 115.83840 * 160.28621 * 25 23 22 27 27 C 1.56923 * 100.83922 * 34.04347 * 25 23 22 28 28 C 1.46923 * 118.73967 * 53.30761 * 14 13 12 29 29 H 0.96999 * 120.00040 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.45716 * 298.70323 * 11 9 7 31 31 H 1.08992 * 109.46108 * 58.67877 * 11 9 7 32 32 H 1.09003 * 109.49838 * 181.31311 * 12 11 9 33 33 H 1.09007 * 109.49516 * 301.41534 * 12 11 9 34 34 H 1.09000 * 109.51081 * 185.70924 * 13 12 11 35 35 H 1.09002 * 109.43393 * 65.42587 * 13 12 11 36 36 H 1.09002 * 110.43929 * 122.14483 * 19 17 15 37 37 H 1.08998 * 110.43585 * 359.75959 * 19 17 15 38 38 H 1.09000 * 110.36185 * 189.22959 * 22 20 19 39 39 H 1.08996 * 110.35834 * 311.53162 * 22 20 19 40 40 H 1.08998 * 112.08720 * 189.93871 * 27 25 23 41 41 H 1.08999 * 112.08837 * 63.26192 * 27 25 23 42 42 H 1.08996 * 109.58668 * 66.43258 * 28 14 13 43 43 H 1.09002 * 109.58477 * 186.85739 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6234 -2.5573 -0.8887 11 6 0.3736 -2.5823 1.2516 12 6 -0.4168 -3.8928 1.2361 13 6 0.5550 -5.0713 1.2475 14 7 1.5002 -4.9229 0.1323 15 6 1.6754 -5.9208 -0.7566 16 8 2.4546 -5.7842 -1.6758 17 6 0.9028 -7.2062 -0.6085 18 1 -0.1687 -7.0162 -0.6710 19 6 1.2513 -7.8934 0.7319 20 6 1.8572 -9.2707 0.3209 21 1 2.4470 -9.7811 1.0823 22 6 0.6474 -10.0667 -0.2580 23 6 0.3251 -9.3819 -1.5782 24 8 -0.5431 -9.6777 -2.3636 25 6 1.3392 -8.2356 -1.6993 26 1 1.4929 -7.8415 -2.7040 27 6 2.5938 -8.8772 -1.0088 28 6 2.2461 -3.6639 0.0011 29 1 -0.4850 0.8400 -0.0004 30 1 1.0040 -2.5490 2.1401 31 1 -0.3191 -1.7409 1.2659 32 1 -1.0590 -3.9407 2.1156 33 1 -1.0288 -3.9379 0.3352 34 1 -0.0004 -6.0023 1.1344 35 1 1.1015 -5.0816 2.1906 36 1 0.3522 -8.0367 1.3312 37 1 1.9846 -7.3041 1.2824 38 1 0.9245 -11.1070 -0.4281 39 1 -0.2050 -10.0062 0.4186 40 1 3.3856 -8.1478 -0.8383 41 1 2.9575 -9.7506 -1.5499 42 1 2.9332 -3.5572 0.8404 43 1 2.8060 -3.6667 -0.9341 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000617293974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:46:33 Heat of formation + Delta-G solvation = -93.618645 kcal Electronic energy + Delta-G solvation = -24230.445599 eV Core-core repulsion = 20853.230029 eV Total energy + Delta-G solvation = -3377.215570 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.33474 -40.57644 -38.72476 -38.05366 -35.41811 -33.19207 -32.34755 -31.09090 -29.81911 -28.05757 -26.99396 -26.28727 -23.53839 -23.33769 -21.40384 -21.17490 -19.84554 -19.46198 -18.55071 -18.04321 -17.56615 -16.78511 -16.71992 -16.37646 -15.90756 -15.72061 -15.18041 -14.91514 -14.81616 -14.59045 -14.42636 -14.11553 -13.79142 -13.68920 -13.61091 -12.90692 -12.73618 -12.64863 -12.57415 -12.45988 -12.19851 -12.14457 -11.89456 -11.82833 -11.66598 -11.65227 -11.51573 -11.22930 -10.86278 -10.70018 -10.45259 -10.32764 -9.48999 -8.12278 -6.27646 0.84798 1.38660 1.41095 1.52205 1.63766 2.10670 2.42670 3.00893 3.14476 3.29759 3.37138 3.65713 3.74715 3.97113 4.03084 4.10490 4.17378 4.25048 4.35473 4.40189 4.46197 4.55471 4.63044 4.76191 4.80747 4.82658 4.85949 4.87896 4.97290 5.03911 5.07667 5.11428 5.11910 5.21889 5.27620 5.32343 5.48142 5.56636 5.60360 5.91997 6.13275 6.33130 6.44967 6.56825 6.82577 7.21680 7.40926 8.91565 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032119 B = 0.003772 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.548743 B = 7421.645637 C = 7593.738880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.017 3.983 3 Si 0.955 3.045 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.537 4.537 8 H 0.053 0.947 9 C 0.040 3.960 10 H -0.019 1.019 11 C -0.105 4.105 12 C -0.131 4.131 13 C 0.109 3.891 14 N -0.604 5.604 15 C 0.513 3.487 16 O -0.591 6.591 17 C -0.099 4.099 18 H 0.104 0.896 19 C -0.118 4.118 20 C -0.073 4.073 21 H 0.152 0.848 22 C -0.165 4.165 23 C 0.371 3.629 24 O -0.486 6.486 25 C -0.151 4.151 26 H 0.087 0.913 27 C -0.117 4.117 28 C 0.131 3.869 29 H 0.261 0.739 30 H 0.041 0.959 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.038 0.962 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.114 0.886 37 H 0.079 0.921 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.065 0.935 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.963 -20.875 8.186 22.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.183 4.183 3 Si 0.781 3.219 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.576 4.576 8 H 0.071 0.929 9 C 0.020 3.980 10 H -0.001 1.001 11 C -0.143 4.143 12 C -0.169 4.169 13 C -0.012 4.012 14 N -0.335 5.335 15 C 0.303 3.697 16 O -0.473 6.473 17 C -0.121 4.121 18 H 0.122 0.878 19 C -0.155 4.155 20 C -0.090 4.090 21 H 0.170 0.830 22 C -0.202 4.202 23 C 0.248 3.752 24 O -0.361 6.361 25 C -0.171 4.171 26 H 0.106 0.894 27 C -0.155 4.155 28 C 0.008 3.992 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.057 0.943 34 H 0.131 0.869 35 H 0.108 0.892 36 H 0.133 0.867 37 H 0.098 0.902 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.086 0.914 41 H 0.109 0.891 42 H 0.083 0.917 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.750 -20.830 7.326 22.093 hybrid contribution 0.278 1.952 -0.920 2.175 sum 1.027 -18.879 6.406 19.962 Atomic orbital electron populations 1.70023 1.07142 1.27133 1.51026 1.25696 0.95672 1.02318 0.94567 0.85550 0.79087 0.79629 0.77654 1.19208 1.21040 1.20037 1.21478 0.93098 0.91906 1.51083 0.92895 1.18889 0.93207 0.91813 0.94041 1.00093 1.21412 0.98742 0.97034 0.97148 1.21878 0.98026 0.95284 1.01732 1.22014 0.90651 0.99478 0.89094 1.48316 1.42202 1.14665 1.28341 1.21018 0.82419 0.85590 0.80703 1.90638 1.40020 1.82501 1.34106 1.22298 1.00279 0.90894 0.98613 0.87822 1.22996 1.03435 0.96083 0.93000 1.23670 0.94732 0.94277 0.96362 0.83030 1.23206 1.01145 1.01670 0.94153 1.26055 0.79198 0.82954 0.86955 1.90401 1.31523 1.66062 1.48153 1.24133 0.98222 0.95440 0.99271 0.89447 1.23576 0.95026 1.00311 0.96539 1.21534 0.94455 0.82786 1.00400 0.92973 0.94032 0.92183 0.88958 0.94305 0.86912 0.89231 0.86743 0.90235 0.85951 0.85727 0.91378 0.89126 0.91657 0.93187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.61 11.32 21.45 0.24 -52.37 16 2 C 0.02 0.91 5.30 84.65 0.45 1.36 16 3 Si 0.96 43.72 29.54 68.60 2.03 45.75 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.54 -29.84 8.56 25.60 0.22 -29.63 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 9 C 0.04 2.01 2.25 -11.46 -0.03 1.98 16 10 H -0.02 -1.13 8.14 -2.38 -0.02 -1.15 16 11 C -0.11 -4.65 4.96 30.62 0.15 -4.50 16 12 C -0.13 -4.29 6.06 30.53 0.19 -4.11 16 13 C 0.11 2.81 5.31 86.22 0.46 3.27 16 14 N -0.60 -20.92 2.96 -819.72 -2.42 -23.34 16 15 C 0.51 17.54 6.62 87.66 0.58 18.12 16 16 O -0.59 -25.50 15.12 -3.03 -0.05 -25.55 16 17 C -0.10 -2.31 1.79 -9.88 -0.02 -2.33 16 18 H 0.10 2.31 7.65 -2.39 -0.02 2.29 16 19 C -0.12 -1.56 4.16 32.17 0.13 -1.42 16 20 C -0.07 -0.70 5.24 -7.33 -0.04 -0.74 16 21 H 0.15 0.55 8.14 -2.38 -0.02 0.53 16 22 C -0.16 -1.66 6.10 31.35 0.19 -1.47 16 23 C 0.37 7.82 7.15 30.50 0.22 8.04 16 24 O -0.49 -14.30 17.99 -1.45 -0.03 -14.33 16 25 C -0.15 -3.62 4.01 -8.13 -0.03 -3.65 16 26 H 0.09 2.68 7.83 -2.38 -0.02 2.66 16 27 C -0.12 -2.05 6.33 33.38 0.21 -1.84 16 28 C 0.13 5.68 5.66 86.36 0.49 6.17 16 29 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 30 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 3.09 6.05 -2.39 -0.01 3.08 16 32 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.04 1.40 8.14 -2.38 -0.02 1.39 16 34 H 0.11 2.04 4.83 -2.39 -0.01 2.02 16 35 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.11 0.82 7.44 -2.39 -0.02 0.80 16 37 H 0.08 1.16 7.19 -2.39 -0.02 1.14 16 38 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.12 0.80 7.84 -2.39 -0.02 0.78 16 40 H 0.07 1.51 7.77 -2.39 -0.02 1.49 16 41 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 43 H 0.05 2.42 7.01 -2.39 -0.02 2.41 16 Total: -1.00 -74.82 330.71 3.95 -70.87 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 1.00 Total: 9.71 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 3.17 Total: -10.74 kcal Atomic # 7 Polarization: -73.53 SS G_CDS: -2.18 Total: -75.71 kcal Atomic # 8 Polarization: -39.80 SS G_CDS: -0.07 Total: -39.88 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -74.82 3.95 -70.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617293974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.748 kcal (2) G-P(sol) polarization free energy of solvation -74.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds