Wall clock time and date at job start Tue Mar 31 2020 08:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99934 * 2 1 4 4 H 1.48505 * 109.46829 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47252 * 299.99590 * 3 2 1 6 6 H 1.48498 * 109.47137 * 59.99951 * 3 2 1 7 7 C 1.37875 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00216 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00033 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.49806 * 300.07202 * 9 7 2 11 11 C 1.53046 * 109.52094 * 60.14727 * 9 7 2 12 12 C 1.53036 * 109.53689 * 181.33113 * 11 9 7 13 13 C 1.53622 * 109.24613 * 298.51382 * 12 11 9 14 14 N 1.46931 * 108.54424 * 54.85288 * 13 12 11 15 15 C 1.34777 * 120.63086 * 126.36867 * 14 13 12 16 16 O 1.21283 * 119.99750 * 179.72075 * 15 14 13 17 17 C 1.50702 * 119.99928 * 0.02562 * 15 14 13 18 18 H 1.09003 * 110.36659 * 302.07754 * 17 15 14 19 19 C 1.54610 * 110.41303 * 64.55666 * 17 15 14 20 20 C 1.56012 * 104.44314 * 117.26038 * 19 17 15 21 21 H 1.09005 * 115.83603 * 162.35627 * 20 19 17 22 22 C 1.55959 * 105.02009 * 291.85494 * 20 19 17 23 23 C 1.52170 * 104.86952 * 70.10217 * 22 20 19 24 24 O 1.20761 * 127.32769 * 179.67311 * 23 22 20 25 25 C 1.53523 * 105.34234 * 359.69523 * 23 22 20 26 26 H 1.09000 * 115.84149 * 161.08367 * 25 23 22 27 27 C 1.56925 * 101.58745 * 34.28135 * 25 23 22 28 28 C 1.46925 * 118.73924 * 306.09826 * 14 13 12 29 29 H 0.97002 * 119.99876 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.45916 * 301.35308 * 11 9 7 31 31 H 1.08996 * 109.45792 * 61.32879 * 11 9 7 32 32 H 1.09003 * 109.49561 * 58.58841 * 12 11 9 33 33 H 1.08996 * 109.50266 * 178.64887 * 12 11 9 34 34 H 1.09000 * 109.74013 * 295.12181 * 13 12 11 35 35 H 1.08995 * 109.66828 * 174.54938 * 13 12 11 36 36 H 1.08994 * 110.43419 * 237.18918 * 19 17 15 37 37 H 1.08993 * 110.43843 * 359.70086 * 19 17 15 38 38 H 1.08996 * 110.35809 * 311.24998 * 22 20 19 39 39 H 1.09005 * 110.35636 * 188.94970 * 22 20 19 40 40 H 1.09003 * 112.08570 * 63.06254 * 27 25 23 41 41 H 1.09002 * 112.08823 * 189.74483 * 27 25 23 42 42 H 1.08994 * 109.58707 * 173.64258 * 28 14 13 43 43 H 1.09003 * 109.58629 * 294.07468 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6236 -2.5570 0.8889 11 6 0.3730 -2.5828 -1.2513 12 6 -0.4174 -3.8931 -1.2351 13 6 0.5627 -5.0760 -1.2528 14 7 1.5000 -4.9231 -0.1317 15 6 1.6761 -5.9209 0.7571 16 8 2.4565 -5.7843 1.6754 17 6 0.9085 -7.2089 0.6057 18 1 -0.1640 -7.0143 0.6117 19 6 1.3206 -7.9324 -0.6970 20 6 1.9443 -9.2784 -0.2140 21 1 2.0275 -10.0611 -0.9681 22 6 3.2679 -8.8754 0.5057 23 6 2.8215 -8.1805 1.7838 24 8 3.5247 -7.7106 2.6458 25 6 1.2869 -8.2045 1.7445 26 1 0.7847 -8.0478 2.6991 27 6 1.0112 -9.5768 1.0351 28 6 2.2460 -3.6641 -0.0011 29 1 -0.4850 0.8401 -0.0004 30 1 -0.3194 -1.7412 -1.2658 31 1 1.0031 -2.5500 -2.1401 32 1 -1.0291 -3.9379 -0.3340 33 1 -1.0604 -3.9412 -2.1139 34 1 1.1151 -5.0823 -2.1925 35 1 0.0121 -6.0103 -1.1440 36 1 0.4498 -8.1012 -1.3303 37 1 2.0746 -7.3544 -1.2312 38 1 3.8446 -8.1911 -0.1165 39 1 3.8563 -9.7621 0.7418 40 1 1.3755 -10.4212 1.6204 41 1 -0.0380 -9.6946 0.7640 42 1 2.8062 -3.6665 0.9338 43 1 2.9328 -3.5575 -0.8409 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000617293975.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:46:45 Heat of formation + Delta-G solvation = -69.949348 kcal Electronic energy + Delta-G solvation = -24580.515581 eV Core-core repulsion = 21204.326389 eV Total energy + Delta-G solvation = -3376.189192 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 5.48 seconds Orbital eigenvalues (eV) -41.33156 -38.93569 -37.20539 -36.63896 -33.56239 -31.47255 -30.88727 -29.80309 -28.90811 -27.25654 -25.08844 -24.68152 -22.09445 -21.73234 -20.46801 -19.93184 -18.78960 -18.11273 -16.83383 -16.65970 -16.22979 -15.85070 -15.17074 -14.78522 -14.35834 -14.13918 -13.72972 -13.69771 -13.39548 -13.07227 -12.84277 -12.61091 -12.54387 -12.19256 -12.03808 -11.92381 -11.70169 -11.46365 -11.26803 -11.00161 -10.94400 -10.81424 -10.73633 -10.70262 -10.31444 -9.96858 -9.81452 -9.47713 -9.24439 -9.08704 -8.82690 -8.40171 -7.91358 -6.03256 -4.10104 2.29702 2.98298 3.28321 3.36385 3.39922 3.46835 4.04571 4.16284 4.25640 4.42106 4.53741 4.75828 4.82527 4.98729 5.05772 5.11831 5.20833 5.27738 5.40064 5.50660 5.56137 5.57789 5.59455 5.69826 5.73158 5.76003 5.80339 5.94841 6.01564 6.08363 6.30158 6.37601 6.45791 6.64244 6.78704 6.94851 7.14040 7.30908 7.67911 7.85595 7.90232 7.99198 8.05940 8.36057 8.61698 8.93754 9.55005 11.02404 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028555 B = 0.004256 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.345387 B = 6577.534807 C = 7133.927076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.112 4.112 12 C -0.135 4.135 13 C 0.108 3.892 14 N -0.600 5.600 15 C 0.501 3.499 16 O -0.532 6.532 17 C -0.106 4.106 18 H 0.107 0.893 19 C -0.117 4.117 20 C -0.095 4.095 21 H 0.112 0.888 22 C -0.181 4.181 23 C 0.376 3.624 24 O -0.416 6.416 25 C -0.136 4.136 26 H 0.114 0.886 27 C -0.119 4.119 28 C 0.117 3.883 29 H 0.260 0.740 30 H 0.095 0.905 31 H 0.035 0.965 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.942 -19.787 -4.847 20.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.150 4.150 12 C -0.173 4.173 13 C -0.015 4.015 14 N -0.332 5.332 15 C 0.288 3.712 16 O -0.410 6.410 17 C -0.128 4.128 18 H 0.125 0.875 19 C -0.154 4.154 20 C -0.113 4.113 21 H 0.130 0.870 22 C -0.218 4.218 23 C 0.248 3.752 24 O -0.286 6.286 25 C -0.156 4.156 26 H 0.132 0.868 27 C -0.156 4.156 28 C -0.004 4.004 29 H 0.070 0.930 30 H 0.113 0.887 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.265 -19.291 -3.896 19.721 hybrid contribution 0.187 1.155 -0.212 1.189 sum -1.079 -18.136 -4.108 18.627 Atomic orbital electron populations 1.69881 1.05902 1.26367 1.50668 1.24931 0.94854 0.99095 0.94914 0.86524 0.80222 0.83650 0.77555 1.19718 1.21032 1.20997 1.21118 0.93037 0.90282 1.50750 0.92452 1.18971 0.92947 0.91192 0.94772 0.95316 1.21625 0.99449 0.95382 0.98561 1.22086 0.97614 0.96716 1.00929 1.21909 0.91452 0.99064 0.89114 1.48265 1.42229 1.15937 1.26726 1.20522 0.83283 0.85039 0.82371 1.90815 1.37281 1.80911 1.32001 1.22349 1.01686 0.92757 0.95959 0.87463 1.22810 1.01463 0.95661 0.95504 1.23841 0.93740 0.97006 0.96757 0.87007 1.23175 0.98837 1.02028 0.97800 1.24914 0.90724 0.73910 0.85670 1.90395 1.63181 1.34895 1.40085 1.24035 0.97346 0.95284 0.98919 0.86828 1.23837 1.00214 0.95531 0.96011 1.22002 0.95057 0.81857 1.01455 0.93039 0.88651 0.94602 0.92384 0.92493 0.91926 0.90944 0.89872 0.90806 0.88841 0.88741 0.90540 0.89628 0.90324 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.02 11.32 55.43 0.63 -24.39 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.51 -14.03 8.56 -34.44 -0.29 -14.32 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.04 0.99 2.25 -91.64 -0.21 0.79 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 11 C -0.11 -2.48 4.96 -26.69 -0.13 -2.62 16 12 C -0.14 -2.33 6.10 -26.39 -0.16 -2.49 16 13 C 0.11 1.58 5.55 -3.48 -0.02 1.56 16 14 N -0.60 -10.88 2.97 -172.50 -0.51 -11.39 16 15 C 0.50 8.92 6.49 -10.98 -0.07 8.85 16 16 O -0.53 -11.82 12.41 -17.56 -0.22 -12.04 16 17 C -0.11 -1.30 2.15 -89.37 -0.19 -1.49 16 18 H 0.11 1.15 7.61 -51.93 -0.40 0.76 16 19 C -0.12 -1.06 4.29 -24.27 -0.10 -1.17 16 20 C -0.10 -0.73 5.26 -84.24 -0.44 -1.18 16 21 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 22 C -0.18 -1.92 6.14 -25.57 -0.16 -2.08 16 23 C 0.38 5.63 5.19 -26.88 -0.14 5.49 16 24 O -0.42 -8.27 16.41 -17.12 -0.28 -8.55 16 25 C -0.14 -1.64 4.62 -86.66 -0.40 -2.04 16 26 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 27 C -0.12 -0.91 6.57 -21.42 -0.14 -1.05 16 28 C 0.12 2.57 5.65 -3.71 -0.02 2.54 16 29 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.10 2.41 6.05 -51.93 -0.31 2.09 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.82 4.95 -51.93 -0.26 0.56 16 36 H 0.08 0.56 7.84 -51.93 -0.41 0.16 16 37 H 0.07 0.77 7.12 -51.93 -0.37 0.40 16 38 H 0.09 1.08 7.87 -51.93 -0.41 0.67 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 1.90 7.00 -51.93 -0.36 1.53 16 43 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 327.11 15.07 4.93 4.93 Total: -1.00 -33.05 327.11 -9.76 -42.81 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -6.71 Total: -0.06 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -2.58 Total: -7.56 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.12 Total: -35.78 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.50 Total: -20.59 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.05 -9.76 -42.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617293975.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.138 kcal (2) G-P(sol) polarization free energy of solvation -33.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.49 seconds