Wall clock time and date at job start Tue Mar 31 2020 08:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99934 * 2 1 4 4 H 1.48505 * 109.46829 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47252 * 299.99590 * 3 2 1 6 6 H 1.48498 * 109.47137 * 59.99951 * 3 2 1 7 7 C 1.37875 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00216 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00033 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.49806 * 300.07202 * 9 7 2 11 11 C 1.53046 * 109.52094 * 60.14727 * 9 7 2 12 12 C 1.53036 * 109.53689 * 181.33113 * 11 9 7 13 13 C 1.53622 * 109.24613 * 298.51382 * 12 11 9 14 14 N 1.46931 * 108.54424 * 54.85288 * 13 12 11 15 15 C 1.34777 * 120.63086 * 126.36867 * 14 13 12 16 16 O 1.21283 * 119.99750 * 179.72075 * 15 14 13 17 17 C 1.50702 * 119.99928 * 0.02562 * 15 14 13 18 18 H 1.09003 * 110.36659 * 302.07754 * 17 15 14 19 19 C 1.54610 * 110.41303 * 64.55666 * 17 15 14 20 20 C 1.56012 * 104.44314 * 117.26038 * 19 17 15 21 21 H 1.09005 * 115.83603 * 162.35627 * 20 19 17 22 22 C 1.55959 * 105.02009 * 291.85494 * 20 19 17 23 23 C 1.52170 * 104.86952 * 70.10217 * 22 20 19 24 24 O 1.20761 * 127.32769 * 179.67311 * 23 22 20 25 25 C 1.53523 * 105.34234 * 359.69523 * 23 22 20 26 26 H 1.09000 * 115.84149 * 161.08367 * 25 23 22 27 27 C 1.56925 * 101.58745 * 34.28135 * 25 23 22 28 28 C 1.46925 * 118.73924 * 306.09826 * 14 13 12 29 29 H 0.97002 * 119.99876 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.45916 * 301.35308 * 11 9 7 31 31 H 1.08996 * 109.45792 * 61.32879 * 11 9 7 32 32 H 1.09003 * 109.49561 * 58.58841 * 12 11 9 33 33 H 1.08996 * 109.50266 * 178.64887 * 12 11 9 34 34 H 1.09000 * 109.74013 * 295.12181 * 13 12 11 35 35 H 1.08995 * 109.66828 * 174.54938 * 13 12 11 36 36 H 1.08994 * 110.43419 * 237.18918 * 19 17 15 37 37 H 1.08993 * 110.43843 * 359.70086 * 19 17 15 38 38 H 1.08996 * 110.35809 * 311.24998 * 22 20 19 39 39 H 1.09005 * 110.35636 * 188.94970 * 22 20 19 40 40 H 1.09003 * 112.08570 * 63.06254 * 27 25 23 41 41 H 1.09002 * 112.08823 * 189.74483 * 27 25 23 42 42 H 1.08994 * 109.58707 * 173.64258 * 28 14 13 43 43 H 1.09003 * 109.58629 * 294.07468 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6236 -2.5570 0.8889 11 6 0.3730 -2.5828 -1.2513 12 6 -0.4174 -3.8931 -1.2351 13 6 0.5627 -5.0760 -1.2528 14 7 1.5000 -4.9231 -0.1317 15 6 1.6761 -5.9209 0.7571 16 8 2.4565 -5.7843 1.6754 17 6 0.9085 -7.2089 0.6057 18 1 -0.1640 -7.0143 0.6117 19 6 1.3206 -7.9324 -0.6970 20 6 1.9443 -9.2784 -0.2140 21 1 2.0275 -10.0611 -0.9681 22 6 3.2679 -8.8754 0.5057 23 6 2.8215 -8.1805 1.7838 24 8 3.5247 -7.7106 2.6458 25 6 1.2869 -8.2045 1.7445 26 1 0.7847 -8.0478 2.6991 27 6 1.0112 -9.5768 1.0351 28 6 2.2460 -3.6641 -0.0011 29 1 -0.4850 0.8401 -0.0004 30 1 -0.3194 -1.7412 -1.2658 31 1 1.0031 -2.5500 -2.1401 32 1 -1.0291 -3.9379 -0.3340 33 1 -1.0604 -3.9412 -2.1139 34 1 1.1151 -5.0823 -2.1925 35 1 0.0121 -6.0103 -1.1440 36 1 0.4498 -8.1012 -1.3303 37 1 2.0746 -7.3544 -1.2312 38 1 3.8446 -8.1911 -0.1165 39 1 3.8563 -9.7621 0.7418 40 1 1.3755 -10.4212 1.6204 41 1 -0.0380 -9.6946 0.7640 42 1 2.8062 -3.6665 0.9338 43 1 2.9328 -3.5575 -0.8409 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000617293975.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:46:45 Heat of formation + Delta-G solvation = -89.930826 kcal Electronic energy + Delta-G solvation = -24581.382043 eV Core-core repulsion = 21204.326389 eV Total energy + Delta-G solvation = -3377.055654 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.37942 -40.30902 -38.42487 -38.15879 -35.42461 -33.17690 -32.29934 -31.07459 -29.75883 -28.16074 -26.99744 -26.12904 -23.39764 -23.19392 -21.40890 -21.17566 -20.15990 -19.35591 -18.46186 -17.90628 -17.51287 -17.07781 -16.72555 -16.34480 -15.81085 -15.46387 -15.16321 -14.92591 -14.68999 -14.55443 -14.32816 -13.86103 -13.76691 -13.62369 -13.40935 -13.01962 -12.88757 -12.74560 -12.57637 -12.45895 -12.29375 -12.08800 -11.90423 -11.83637 -11.64993 -11.53638 -11.47329 -11.24653 -10.87223 -10.62261 -10.45343 -10.16039 -9.50142 -8.14906 -6.30246 1.19789 1.36092 1.38389 1.49777 1.62893 2.08526 2.40453 3.11433 3.15935 3.35328 3.44189 3.64874 3.83191 3.98690 4.09833 4.18307 4.24704 4.26541 4.33114 4.40764 4.48902 4.52699 4.61107 4.75407 4.78440 4.81109 4.85670 4.94475 4.96427 5.06763 5.10225 5.11682 5.19074 5.25642 5.28363 5.37932 5.45667 5.55961 5.58069 5.89827 6.11153 6.31108 6.55763 6.78173 6.79944 7.22623 7.38044 8.88938 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028555 B = 0.004256 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.345387 B = 6577.534807 C = 7133.927076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.019 3.981 3 Si 0.955 3.045 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.048 0.952 9 C 0.043 3.957 10 H -0.018 1.018 11 C -0.105 4.105 12 C -0.129 4.129 13 C 0.109 3.891 14 N -0.604 5.604 15 C 0.489 3.511 16 O -0.588 6.588 17 C -0.100 4.100 18 H 0.134 0.866 19 C -0.116 4.116 20 C -0.073 4.073 21 H 0.156 0.844 22 C -0.183 4.183 23 C 0.356 3.644 24 O -0.487 6.487 25 C -0.151 4.151 26 H 0.099 0.901 27 C -0.099 4.099 28 C 0.131 3.869 29 H 0.262 0.738 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.043 0.957 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.121 0.879 36 H 0.128 0.872 37 H 0.061 0.939 38 H 0.080 0.920 39 H 0.114 0.886 40 H 0.087 0.913 41 H 0.118 0.882 42 H 0.040 0.960 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.691 -22.799 -7.909 24.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.181 4.181 3 Si 0.780 3.220 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.066 0.934 9 C 0.023 3.977 10 H 0.000 1.000 11 C -0.143 4.143 12 C -0.167 4.167 13 C -0.012 4.012 14 N -0.335 5.335 15 C 0.278 3.722 16 O -0.469 6.469 17 C -0.121 4.121 18 H 0.152 0.848 19 C -0.153 4.153 20 C -0.090 4.090 21 H 0.173 0.827 22 C -0.220 4.220 23 C 0.233 3.767 24 O -0.361 6.361 25 C -0.171 4.171 26 H 0.117 0.883 27 C -0.136 4.136 28 C 0.008 3.992 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.139 0.861 36 H 0.146 0.854 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.132 0.868 40 H 0.106 0.894 41 H 0.137 0.863 42 H 0.059 0.941 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.054 -22.335 -7.005 23.606 hybrid contribution 0.751 2.140 0.822 2.413 sum -2.303 -20.194 -6.183 21.245 Atomic orbital electron populations 1.70008 1.07014 1.27207 1.50837 1.25669 0.95725 1.02207 0.94451 0.85558 0.78910 0.79649 0.77858 1.19610 1.19712 1.20822 1.21463 0.92919 0.92134 1.51412 0.93420 1.18863 0.93090 0.91477 0.94232 0.99983 1.21411 0.98705 0.97415 0.96809 1.22007 0.97838 0.94839 1.01973 1.22202 0.90606 0.99866 0.88514 1.48342 1.42526 1.14475 1.28145 1.21734 0.82838 0.86614 0.80964 1.90811 1.39789 1.82136 1.34165 1.22493 1.01894 0.89476 0.98209 0.84810 1.22957 1.03075 0.95566 0.93698 1.23962 0.90781 0.97218 0.97061 0.82654 1.23275 1.01230 1.01934 0.95581 1.25990 0.92510 0.72136 0.86061 1.90350 1.65011 1.37860 1.42905 1.24181 0.95083 0.98698 0.99096 0.88311 1.23888 1.02200 0.92511 0.95046 1.21476 0.94565 0.83427 0.99692 0.92843 0.92003 0.94342 0.93804 0.88796 0.89782 0.86077 0.85356 0.92043 0.90196 0.86796 0.89436 0.86326 0.94084 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.87 11.32 21.45 0.24 -52.62 16 2 C 0.02 1.06 5.30 84.65 0.45 1.51 16 3 Si 0.95 44.65 29.54 68.60 2.03 46.68 16 4 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 6 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 7 C -0.54 -31.03 8.56 25.60 0.22 -30.81 16 8 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 9 C 0.04 2.22 2.25 -11.46 -0.03 2.19 16 10 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 11 C -0.11 -4.72 4.96 30.62 0.15 -4.57 16 12 C -0.13 -4.15 6.10 30.82 0.19 -3.96 16 13 C 0.11 2.82 5.55 86.51 0.48 3.30 16 14 N -0.60 -21.82 2.97 -818.06 -2.43 -24.25 16 15 C 0.49 17.56 6.49 87.66 0.57 18.13 16 16 O -0.59 -27.97 12.41 19.06 0.24 -27.73 16 17 C -0.10 -2.16 2.15 -9.98 -0.02 -2.18 16 18 H 0.13 2.24 7.61 -2.39 -0.02 2.22 16 19 C -0.12 -1.46 4.29 32.19 0.14 -1.32 16 20 C -0.07 -0.71 5.26 -6.66 -0.04 -0.74 16 21 H 0.16 0.39 8.14 -2.38 -0.02 0.37 16 22 C -0.18 -3.54 6.14 31.35 0.19 -3.34 16 23 C 0.36 10.90 5.19 30.50 0.16 11.06 16 24 O -0.49 -21.00 16.41 20.65 0.34 -20.66 16 25 C -0.15 -3.40 4.62 -8.23 -0.04 -3.44 16 26 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 27 C -0.10 -1.02 6.57 34.03 0.22 -0.80 16 28 C 0.13 6.07 5.65 86.36 0.49 6.55 16 29 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 30 H 0.06 3.20 6.05 -2.39 -0.01 3.18 16 31 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.12 2.00 4.95 -2.39 -0.01 1.98 16 36 H 0.13 0.61 7.84 -2.39 -0.02 0.60 16 37 H 0.06 1.00 7.12 -2.39 -0.02 0.99 16 38 H 0.08 1.79 7.87 -2.39 -0.02 1.77 16 39 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 40 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.04 2.16 7.00 -2.39 -0.02 2.14 16 43 H 0.06 2.61 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -83.24 327.11 4.55 -78.68 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 1.00 Total: 8.31 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: 3.14 Total: -8.42 kcal Atomic # 7 Polarization: -74.69 SS G_CDS: -2.18 Total: -76.87 kcal Atomic # 8 Polarization: -48.96 SS G_CDS: 0.58 Total: -48.39 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -83.24 4.55 -78.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617293975.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.246 kcal (2) G-P(sol) polarization free energy of solvation -83.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds