Wall clock time and date at job start Tue Mar 31 2020 08:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99940 * 2 1 4 4 H 1.48500 * 109.47243 * 264.85446 * 3 2 1 5 5 H 1.48496 * 109.47161 * 24.85510 * 3 2 1 6 6 H 1.48507 * 109.47233 * 144.85406 * 3 2 1 7 7 C 1.37878 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99991 * 4.25233 * 7 2 1 9 9 C 1.50699 * 120.00003 * 184.26348 * 7 2 1 10 10 H 1.09001 * 109.52409 * 333.49526 * 9 7 2 11 11 C 1.53040 * 109.50070 * 93.57907 * 9 7 2 12 12 C 1.53038 * 109.53690 * 181.31325 * 11 9 7 13 13 C 1.53622 * 109.24469 * 298.51211 * 12 11 9 14 14 N 1.46923 * 108.54179 * 54.85813 * 13 12 11 15 15 C 1.34778 * 120.63253 * 126.36752 * 14 13 12 16 16 O 1.21283 * 120.00012 * 179.71772 * 15 14 13 17 17 C 1.50701 * 119.99779 * 359.44526 * 15 14 13 18 18 H 1.09001 * 110.37018 * 57.92084 * 17 15 14 19 19 C 1.54609 * 110.41372 * 295.43775 * 17 15 14 20 20 C 1.55977 * 104.46302 * 240.89615 * 19 17 15 21 21 H 1.09005 * 116.70516 * 161.25313 * 20 19 17 22 22 C 1.55957 * 104.30890 * 290.79286 * 20 19 17 23 23 C 1.52176 * 104.87230 * 70.38098 * 22 20 19 24 24 O 1.20759 * 127.33016 * 179.70051 * 23 22 20 25 25 C 1.53518 * 105.33736 * 359.70142 * 23 22 20 26 26 H 1.09005 * 116.43738 * 160.64696 * 25 23 22 27 27 C 1.56926 * 100.84462 * 34.04092 * 25 23 22 28 28 C 1.46926 * 118.74037 * 306.09126 * 14 13 12 29 29 H 0.97004 * 119.99938 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.46159 * 301.33838 * 11 9 7 31 31 H 1.09005 * 109.45748 * 61.29576 * 11 9 7 32 32 H 1.09003 * 109.49829 * 58.58940 * 12 11 9 33 33 H 1.08998 * 109.49646 * 178.65056 * 12 11 9 34 34 H 1.08992 * 109.74090 * 295.12165 * 13 12 11 35 35 H 1.09007 * 109.66522 * 174.54611 * 13 12 11 36 36 H 1.09007 * 110.43533 * 359.63846 * 19 17 15 37 37 H 1.08992 * 110.44029 * 122.14694 * 19 17 15 38 38 H 1.09001 * 110.36809 * 189.23496 * 22 20 19 39 39 H 1.09006 * 110.35875 * 311.42440 * 22 20 19 40 40 H 1.08997 * 112.08541 * 63.25875 * 27 25 23 41 41 H 1.09004 * 112.08639 * 189.93857 * 27 25 23 42 42 H 1.09001 * 109.58836 * 173.64825 * 28 14 13 43 43 H 1.08999 * 109.58533 * 294.07436 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6054 1.9837 -1.3944 5 1 1.3964 2.6816 0.5885 6 1 3.4881 1.4740 0.8060 7 6 2.0046 -1.1940 -0.0005 8 1 1.4668 -2.1280 -0.0703 9 6 3.5084 -1.1959 0.0965 10 1 3.9003 -0.2603 -0.3027 11 6 3.9256 -1.3406 1.5618 12 6 5.4522 -1.3097 1.6647 13 6 6.0369 -2.4918 0.8768 14 7 5.5240 -2.4358 -0.4989 15 6 6.3697 -2.4492 -1.5482 16 8 5.9336 -2.4077 -2.6791 17 6 7.8575 -2.5096 -1.3160 18 1 8.1155 -3.3962 -0.7368 19 6 8.3432 -1.2311 -0.5949 20 6 9.3592 -0.5862 -1.5873 21 1 9.5901 0.4682 -1.4356 22 6 10.5753 -1.5626 -1.5825 23 6 10.0784 -2.8089 -2.3007 24 8 10.6988 -3.8198 -2.5272 25 6 8.6206 -2.5073 -2.6758 26 1 8.1861 -3.1201 -3.4657 27 6 8.7020 -0.9664 -2.9617 28 6 4.0713 -2.3711 -0.7091 29 1 -0.4850 0.8401 0.0004 30 1 3.5058 -0.5189 2.1418 31 1 3.5544 -2.2879 1.9531 32 1 5.8259 -0.3731 1.2508 33 1 5.7480 -1.3888 2.7108 34 1 5.7340 -3.4299 1.3417 35 1 7.1247 -2.4222 0.8643 36 1 7.5071 -0.5555 -0.4137 37 1 8.8368 -1.4870 0.3424 38 1 11.4157 -1.1244 -2.1208 39 1 10.8649 -1.8026 -0.5594 40 1 9.3547 -0.7399 -3.8047 41 1 7.7152 -0.5192 -3.0818 42 1 3.8617 -2.2217 -1.7683 43 1 3.6114 -3.2996 -0.3708 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000617293976.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:47:00 Heat of formation + Delta-G solvation = -74.233203 kcal Electronic energy + Delta-G solvation = -24463.805447 eV Core-core repulsion = 21087.430493 eV Total energy + Delta-G solvation = -3376.374954 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 4.98 seconds Orbital eigenvalues (eV) -41.45140 -39.41533 -37.67223 -36.80014 -33.54793 -31.88928 -31.12205 -30.14642 -29.04531 -27.32252 -25.23430 -25.08398 -22.43409 -21.77806 -20.61598 -19.78693 -18.92214 -18.29327 -17.31606 -16.81513 -16.70920 -15.82407 -15.31062 -14.95230 -14.75585 -14.42264 -14.02811 -13.84058 -13.75813 -13.46933 -12.96664 -12.80950 -12.60792 -12.57033 -12.42567 -11.94619 -11.68415 -11.50226 -11.38942 -11.21674 -11.07844 -10.99969 -10.92949 -10.76049 -10.42714 -10.09206 -9.88022 -9.69219 -9.65243 -9.34646 -9.05013 -8.59933 -8.12559 -6.13928 -4.14212 1.66732 2.85516 3.24653 3.32577 3.33330 3.33610 3.79671 4.08885 4.11131 4.36679 4.39036 4.65013 4.70253 4.80666 4.92608 5.00754 5.10748 5.18182 5.21802 5.32336 5.34959 5.42283 5.51059 5.54659 5.64526 5.73534 5.82732 5.86319 5.92771 5.95977 5.97639 6.11412 6.19876 6.34421 6.54135 6.65159 6.78802 6.85696 7.20887 7.24947 7.35511 7.69003 7.80309 8.42282 8.48861 8.90598 9.48709 10.99129 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025499 B = 0.004471 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.831869 B = 6261.574184 C = 6352.307390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.074 3.926 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.265 1.265 7 C -0.514 4.514 8 H 0.075 0.925 9 C 0.008 3.992 10 H 0.033 0.967 11 C -0.113 4.113 12 C -0.138 4.138 13 C 0.105 3.895 14 N -0.606 5.606 15 C 0.519 3.481 16 O -0.541 6.541 17 C -0.105 4.105 18 H 0.097 0.903 19 C -0.119 4.119 20 C -0.096 4.096 21 H 0.115 0.885 22 C -0.178 4.178 23 C 0.369 3.631 24 O -0.444 6.444 25 C -0.131 4.131 26 H 0.124 0.876 27 C -0.119 4.119 28 C 0.123 3.877 29 H 0.265 0.735 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.471 -0.888 1.443 20.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.128 4.128 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.190 1.190 7 C -0.552 4.552 8 H 0.093 0.907 9 C -0.012 4.012 10 H 0.051 0.949 11 C -0.151 4.151 12 C -0.176 4.176 13 C -0.019 4.019 14 N -0.338 5.338 15 C 0.306 3.694 16 O -0.419 6.419 17 C -0.127 4.127 18 H 0.115 0.885 19 C -0.156 4.156 20 C -0.115 4.115 21 H 0.133 0.867 22 C -0.216 4.216 23 C 0.243 3.757 24 O -0.316 6.316 25 C -0.150 4.150 26 H 0.142 0.858 27 C -0.156 4.156 28 C 0.002 3.998 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.095 0.905 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 20.377 -1.306 0.739 20.432 hybrid contribution 0.227 0.922 0.241 0.979 sum 20.603 -0.384 0.980 20.630 Atomic orbital electron populations 1.69899 1.06320 1.27081 1.50175 1.25027 0.94661 0.98950 0.94142 0.86866 0.80137 0.83687 0.78843 1.20169 1.21613 1.18969 1.20868 0.88522 0.94737 1.51070 0.90725 1.19439 0.96755 0.93921 0.91101 0.94876 1.21856 0.91404 1.01490 1.00356 1.22102 0.99107 0.97560 0.98857 1.21902 0.98357 0.99281 0.82313 1.48357 1.08264 1.71642 1.05520 1.20172 0.87656 0.76651 0.84929 1.90682 1.78477 1.50364 1.22381 1.22247 0.93164 1.00424 0.96852 0.88464 1.22844 0.99562 0.95387 0.97824 1.23600 0.93572 0.98615 0.95673 0.86674 1.23193 0.99816 0.95953 1.02597 1.25628 0.89558 0.86384 0.74088 1.90406 1.64657 1.29810 1.46693 1.24040 0.93794 0.99451 0.97743 0.85792 1.23602 1.02296 0.93094 0.96607 1.21984 0.75603 0.99833 1.02386 0.92551 0.92558 0.92611 0.92256 0.91875 0.91577 0.90475 0.89887 0.90189 0.88330 0.88269 0.90498 0.89038 0.89544 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.81 13.96 55.43 0.77 -26.03 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 21.06 26.84 -169.99 -4.56 16.49 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.26 -5.97 6.87 56.52 0.39 -5.59 16 7 C -0.51 -13.80 8.87 -34.44 -0.31 -14.10 16 8 H 0.07 2.18 8.06 -52.49 -0.42 1.75 16 9 C 0.01 0.17 1.86 -91.65 -0.17 0.00 16 10 H 0.03 0.77 5.42 -51.93 -0.28 0.49 16 11 C -0.11 -2.13 5.14 -26.69 -0.14 -2.27 16 12 C -0.14 -1.97 6.10 -26.39 -0.16 -2.13 16 13 C 0.10 1.34 5.82 -3.49 -0.02 1.32 16 14 N -0.61 -9.90 2.97 -172.50 -0.51 -10.41 16 15 C 0.52 8.32 6.61 -10.98 -0.07 8.25 16 16 O -0.54 -10.64 14.94 5.56 0.08 -10.56 16 17 C -0.11 -1.22 1.76 -89.36 -0.16 -1.38 16 18 H 0.10 1.01 7.74 -51.93 -0.40 0.61 16 19 C -0.12 -1.09 4.14 -24.29 -0.10 -1.19 16 20 C -0.10 -0.75 5.24 -85.27 -0.45 -1.20 16 21 H 0.12 0.71 8.14 -51.93 -0.42 0.28 16 22 C -0.18 -1.32 6.10 -25.57 -0.16 -1.48 16 23 C 0.37 4.00 7.14 -26.88 -0.19 3.81 16 24 O -0.44 -6.27 17.99 6.00 0.11 -6.17 16 25 C -0.13 -1.51 4.01 -86.66 -0.35 -1.86 16 26 H 0.12 1.62 7.82 -51.93 -0.41 1.22 16 27 C -0.12 -1.19 6.31 -22.43 -0.14 -1.33 16 28 C 0.12 2.46 5.70 -3.71 -0.02 2.44 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.06 1.14 8.02 -51.93 -0.42 0.72 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.87 8.04 -51.93 -0.42 0.45 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.76 4.52 -51.93 -0.23 0.53 16 36 H 0.08 0.90 7.35 -51.93 -0.38 0.52 16 37 H 0.08 0.56 7.38 -51.93 -0.38 0.17 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 0.62 7.84 -51.93 -0.41 0.21 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.09 1.12 7.65 -51.93 -0.40 0.72 16 42 H 0.09 1.92 7.01 -51.93 -0.36 1.55 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 330.18 15.07 4.98 4.98 Total: -1.00 -32.11 330.18 -8.28 -40.39 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -6.62 Total: 0.44 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -2.53 Total: -9.13 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.26 Total: -36.44 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: 0.19 Total: -16.73 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.56 Total: 16.49 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.11 -8.28 -40.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617293976.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.844 kcal (2) G-P(sol) polarization free energy of solvation -32.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.98 seconds