Wall clock time and date at job start Tue Mar 31 2020 08:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99940 * 2 1 4 4 H 1.48500 * 109.47243 * 264.85446 * 3 2 1 5 5 H 1.48496 * 109.47161 * 24.85510 * 3 2 1 6 6 H 1.48507 * 109.47233 * 144.85406 * 3 2 1 7 7 C 1.37878 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99991 * 4.25233 * 7 2 1 9 9 C 1.50699 * 120.00003 * 184.26348 * 7 2 1 10 10 H 1.09001 * 109.52409 * 333.49526 * 9 7 2 11 11 C 1.53040 * 109.50070 * 93.57907 * 9 7 2 12 12 C 1.53038 * 109.53690 * 181.31325 * 11 9 7 13 13 C 1.53622 * 109.24469 * 298.51211 * 12 11 9 14 14 N 1.46923 * 108.54179 * 54.85813 * 13 12 11 15 15 C 1.34778 * 120.63253 * 126.36752 * 14 13 12 16 16 O 1.21283 * 120.00012 * 179.71772 * 15 14 13 17 17 C 1.50701 * 119.99779 * 359.44526 * 15 14 13 18 18 H 1.09001 * 110.37018 * 57.92084 * 17 15 14 19 19 C 1.54609 * 110.41372 * 295.43775 * 17 15 14 20 20 C 1.55977 * 104.46302 * 240.89615 * 19 17 15 21 21 H 1.09005 * 116.70516 * 161.25313 * 20 19 17 22 22 C 1.55957 * 104.30890 * 290.79286 * 20 19 17 23 23 C 1.52176 * 104.87230 * 70.38098 * 22 20 19 24 24 O 1.20759 * 127.33016 * 179.70051 * 23 22 20 25 25 C 1.53518 * 105.33736 * 359.70142 * 23 22 20 26 26 H 1.09005 * 116.43738 * 160.64696 * 25 23 22 27 27 C 1.56926 * 100.84462 * 34.04092 * 25 23 22 28 28 C 1.46926 * 118.74037 * 306.09126 * 14 13 12 29 29 H 0.97004 * 119.99938 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.46159 * 301.33838 * 11 9 7 31 31 H 1.09005 * 109.45748 * 61.29576 * 11 9 7 32 32 H 1.09003 * 109.49829 * 58.58940 * 12 11 9 33 33 H 1.08998 * 109.49646 * 178.65056 * 12 11 9 34 34 H 1.08992 * 109.74090 * 295.12165 * 13 12 11 35 35 H 1.09007 * 109.66522 * 174.54611 * 13 12 11 36 36 H 1.09007 * 110.43533 * 359.63846 * 19 17 15 37 37 H 1.08992 * 110.44029 * 122.14694 * 19 17 15 38 38 H 1.09001 * 110.36809 * 189.23496 * 22 20 19 39 39 H 1.09006 * 110.35875 * 311.42440 * 22 20 19 40 40 H 1.08997 * 112.08541 * 63.25875 * 27 25 23 41 41 H 1.09004 * 112.08639 * 189.93857 * 27 25 23 42 42 H 1.09001 * 109.58836 * 173.64825 * 28 14 13 43 43 H 1.08999 * 109.58533 * 294.07436 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6054 1.9837 -1.3944 5 1 1.3964 2.6816 0.5885 6 1 3.4881 1.4740 0.8060 7 6 2.0046 -1.1940 -0.0005 8 1 1.4668 -2.1280 -0.0703 9 6 3.5084 -1.1959 0.0965 10 1 3.9003 -0.2603 -0.3027 11 6 3.9256 -1.3406 1.5618 12 6 5.4522 -1.3097 1.6647 13 6 6.0369 -2.4918 0.8768 14 7 5.5240 -2.4358 -0.4989 15 6 6.3697 -2.4492 -1.5482 16 8 5.9336 -2.4077 -2.6791 17 6 7.8575 -2.5096 -1.3160 18 1 8.1155 -3.3962 -0.7368 19 6 8.3432 -1.2311 -0.5949 20 6 9.3592 -0.5862 -1.5873 21 1 9.5901 0.4682 -1.4356 22 6 10.5753 -1.5626 -1.5825 23 6 10.0784 -2.8089 -2.3007 24 8 10.6988 -3.8198 -2.5272 25 6 8.6206 -2.5073 -2.6758 26 1 8.1861 -3.1201 -3.4657 27 6 8.7020 -0.9664 -2.9617 28 6 4.0713 -2.3711 -0.7091 29 1 -0.4850 0.8401 0.0004 30 1 3.5058 -0.5189 2.1418 31 1 3.5544 -2.2879 1.9531 32 1 5.8259 -0.3731 1.2508 33 1 5.7480 -1.3888 2.7108 34 1 5.7340 -3.4299 1.3417 35 1 7.1247 -2.4222 0.8643 36 1 7.5071 -0.5555 -0.4137 37 1 8.8368 -1.4870 0.3424 38 1 11.4157 -1.1244 -2.1208 39 1 10.8649 -1.8026 -0.5594 40 1 9.3547 -0.7399 -3.8047 41 1 7.7152 -0.5192 -3.0818 42 1 3.8617 -2.2217 -1.7683 43 1 3.6114 -3.2996 -0.3708 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000617293976.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:46:55 Heat of formation + Delta-G solvation = -94.814456 kcal Electronic energy + Delta-G solvation = -24464.697917 eV Core-core repulsion = 21087.430493 eV Total energy + Delta-G solvation = -3377.267424 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 5.13 seconds Orbital eigenvalues (eV) -42.37103 -40.60379 -38.74839 -38.08631 -35.31479 -33.59644 -32.38979 -31.27073 -29.85786 -28.09807 -27.03590 -26.38432 -23.49240 -23.19994 -21.53763 -21.04058 -20.03396 -19.41819 -18.90101 -18.27458 -17.58837 -16.83676 -16.55809 -16.34603 -15.92170 -15.75994 -15.30064 -15.07463 -14.80479 -14.58772 -14.54058 -14.17915 -13.90937 -13.77588 -13.73014 -12.99229 -12.93445 -12.68831 -12.55279 -12.45525 -12.21876 -12.02013 -11.90944 -11.84526 -11.67841 -11.66476 -11.45226 -11.37326 -11.05014 -10.70725 -10.69309 -10.34222 -9.53836 -8.31381 -6.35378 0.84701 1.32022 1.34248 1.44413 1.62264 2.07600 2.32795 2.99100 3.05646 3.27487 3.35766 3.64315 3.73606 3.95439 4.02535 4.09467 4.13408 4.15175 4.26066 4.36437 4.41256 4.42678 4.56065 4.69888 4.75345 4.81048 4.81831 4.84521 4.93493 5.01294 5.03057 5.05152 5.07880 5.14524 5.22104 5.27060 5.29673 5.43704 5.53756 5.69659 5.78302 6.27123 6.44646 6.53902 6.71470 7.20137 7.30504 8.85613 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025499 B = 0.004471 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.831869 B = 6261.574184 C = 6352.307390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.014 3.986 3 Si 0.941 3.059 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.235 1.235 7 C -0.518 4.518 8 H 0.032 0.968 9 C 0.010 3.990 10 H 0.026 0.974 11 C -0.111 4.111 12 C -0.129 4.129 13 C 0.101 3.899 14 N -0.607 5.607 15 C 0.512 3.488 16 O -0.590 6.590 17 C -0.098 4.098 18 H 0.117 0.883 19 C -0.120 4.120 20 C -0.077 4.077 21 H 0.145 0.855 22 C -0.164 4.164 23 C 0.376 3.624 24 O -0.483 6.483 25 C -0.148 4.148 26 H 0.092 0.908 27 C -0.123 4.123 28 C 0.133 3.867 29 H 0.266 0.734 30 H 0.043 0.957 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.120 0.880 36 H 0.070 0.930 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.128 0.872 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.133 0.603 3.903 25.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.183 4.183 3 Si 0.765 3.235 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.158 1.158 7 C -0.556 4.556 8 H 0.050 0.950 9 C -0.010 4.010 10 H 0.044 0.956 11 C -0.149 4.149 12 C -0.167 4.167 13 C -0.020 4.020 14 N -0.339 5.339 15 C 0.302 3.698 16 O -0.470 6.470 17 C -0.119 4.119 18 H 0.135 0.865 19 C -0.157 4.157 20 C -0.095 4.095 21 H 0.163 0.837 22 C -0.200 4.200 23 C 0.253 3.747 24 O -0.358 6.358 25 C -0.168 4.168 26 H 0.110 0.890 27 C -0.160 4.160 28 C 0.010 3.990 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.121 0.879 34 H 0.096 0.904 35 H 0.138 0.862 36 H 0.089 0.911 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.146 0.854 40 H 0.107 0.893 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 25.073 0.178 3.237 25.282 hybrid contribution -1.342 0.323 -0.628 1.517 sum 23.731 0.501 2.608 23.879 Atomic orbital electron populations 1.70053 1.08283 1.28077 1.52508 1.25902 0.95406 1.02953 0.94068 0.85838 0.79871 0.78776 0.79031 1.20443 1.21250 1.15791 1.21204 0.91430 0.93091 1.49907 0.94981 1.19369 0.93371 0.94225 0.94031 0.95606 1.21698 0.95573 1.00865 0.96813 1.22051 0.94722 0.98319 1.01611 1.22238 1.00696 0.99414 0.79696 1.48370 1.06349 1.71557 1.07591 1.21076 0.89638 0.75129 0.83976 1.90663 1.79664 1.52264 1.24457 1.22279 0.89092 1.03012 0.97509 0.86535 1.22978 0.99803 0.93452 0.99466 1.23656 0.92872 1.00196 0.92784 0.83747 1.23182 0.99930 0.93197 1.03737 1.25925 0.88545 0.86946 0.73285 1.90403 1.65151 1.31739 1.48460 1.24074 0.95035 1.00350 0.97317 0.88991 1.23610 1.01448 0.91715 0.99262 1.21466 0.78789 0.98803 0.99927 0.92536 0.93855 0.92884 0.91834 0.87919 0.90375 0.86242 0.91107 0.86188 0.86171 0.85428 0.89286 0.91958 0.92926 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.29 13.96 21.45 0.30 -58.99 16 2 C 0.01 0.80 5.47 84.65 0.46 1.27 16 3 Si 0.94 43.83 26.84 68.60 1.84 45.67 16 4 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.23 -9.71 6.87 99.48 0.68 -9.03 16 7 C -0.52 -29.16 8.87 25.60 0.23 -28.93 16 8 H 0.03 2.01 8.06 -2.91 -0.02 1.99 16 9 C 0.01 0.43 1.86 -11.46 -0.02 0.41 16 10 H 0.03 1.18 5.42 -2.39 -0.01 1.17 16 11 C -0.11 -4.02 5.14 30.62 0.16 -3.86 16 12 C -0.13 -3.09 6.10 30.82 0.19 -2.90 16 13 C 0.10 2.17 5.82 86.51 0.50 2.67 16 14 N -0.61 -19.14 2.97 -818.06 -2.43 -21.57 16 15 C 0.51 16.19 6.61 87.66 0.58 16.77 16 16 O -0.59 -24.33 14.94 -3.04 -0.05 -24.38 16 17 C -0.10 -2.00 1.76 -9.98 -0.02 -2.02 16 18 H 0.12 1.96 7.74 -2.39 -0.02 1.94 16 19 C -0.12 -1.56 4.14 32.17 0.13 -1.43 16 20 C -0.08 -0.81 5.24 -7.33 -0.04 -0.84 16 21 H 0.14 0.83 8.14 -2.38 -0.02 0.81 16 22 C -0.16 -1.51 6.10 31.35 0.19 -1.32 16 23 C 0.38 7.13 7.14 30.50 0.22 7.34 16 24 O -0.48 -12.86 17.99 -1.45 -0.03 -12.88 16 25 C -0.15 -3.28 4.01 -8.23 -0.03 -3.31 16 26 H 0.09 2.58 7.82 -2.38 -0.02 2.56 16 27 C -0.12 -2.25 6.31 33.38 0.21 -2.04 16 28 C 0.13 5.51 5.70 86.36 0.49 6.00 16 29 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 30 H 0.04 1.66 8.02 -2.39 -0.02 1.64 16 31 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.06 1.52 8.04 -2.39 -0.02 1.50 16 33 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.12 1.61 4.52 -2.38 -0.01 1.60 16 36 H 0.07 1.19 7.35 -2.38 -0.02 1.17 16 37 H 0.12 0.70 7.38 -2.39 -0.02 0.69 16 38 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.13 0.63 7.84 -2.38 -0.02 0.62 16 40 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.06 1.52 7.65 -2.38 -0.02 1.50 16 42 H 0.05 2.50 7.01 -2.39 -0.02 2.48 16 43 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -77.99 330.18 3.87 -74.12 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.98 Total: 10.23 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: 3.25 Total: -12.20 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -2.13 Total: -80.56 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -0.07 Total: -37.26 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.84 Total: 45.67 kcal Total: -77.99 3.87 -74.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617293976.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.697 kcal (2) G-P(sol) polarization free energy of solvation -77.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.13 seconds