Wall clock time and date at job start Tue Mar 31 2020 08:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86794 * 120.00536 * 2 1 4 4 H 1.48504 * 109.47543 * 270.00369 * 3 2 1 5 5 H 1.48505 * 109.47020 * 30.00002 * 3 2 1 6 6 H 1.48505 * 109.47486 * 150.00001 * 3 2 1 7 7 C 1.37884 * 119.99905 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00193 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99590 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46889 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47149 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.47430 * 179.97438 * 11 10 9 13 13 C 1.46897 * 111.00059 * 66.04123 * 12 11 10 14 14 C 1.53002 * 109.47287 * 199.53080 * 13 12 11 15 15 C 1.50697 * 109.47320 * 174.92851 * 14 13 12 16 16 O 1.20825 * 120.00053 * 359.97438 * 15 14 13 17 17 O 1.34225 * 119.99826 * 180.02562 * 15 14 13 18 18 C 1.46904 * 111.00334 * 190.00030 * 12 11 10 19 19 C 1.50696 * 109.47232 * 75.82299 * 18 12 11 20 20 C 1.38241 * 119.99539 * 84.40809 * 19 18 12 21 21 C 1.38232 * 119.99590 * 180.02562 * 20 19 18 22 22 C 1.38238 * 120.00315 * 359.94906 * 21 20 19 23 23 C 1.38235 * 119.99990 * 0.28253 * 22 21 20 24 24 C 1.38229 * 120.00578 * 264.38477 * 19 18 12 25 25 H 0.97005 * 119.99489 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47391 * 59.99434 * 9 7 2 27 27 H 1.08997 * 109.46702 * 299.99504 * 9 7 2 28 28 H 1.08999 * 109.47619 * 59.99508 * 10 9 7 29 29 H 1.09008 * 109.46648 * 299.99582 * 10 9 7 30 30 H 1.08999 * 109.47229 * 59.99309 * 11 10 9 31 31 H 1.08999 * 109.47086 * 299.99692 * 11 10 9 32 32 H 1.08994 * 109.47522 * 319.52930 * 13 12 11 33 33 H 1.09000 * 109.47282 * 79.53205 * 13 12 11 34 34 H 1.09004 * 109.46799 * 294.92689 * 14 13 12 35 35 H 1.09006 * 109.47295 * 54.92290 * 14 13 12 36 36 H 0.96700 * 116.99893 * 179.97438 * 17 15 14 37 37 H 1.09002 * 109.46580 * 315.82616 * 18 12 11 38 38 H 1.09003 * 109.47050 * 195.83059 * 18 12 11 39 39 H 1.07994 * 120.00311 * 359.97438 * 20 19 18 40 40 H 1.08006 * 119.99981 * 179.97438 * 21 20 19 41 41 H 1.08001 * 119.99726 * 180.02562 * 22 21 20 42 42 H 1.07992 * 120.00391 * 179.72184 * 23 22 21 43 43 H 1.08006 * 119.99492 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2450 -3.6621 -0.0015 11 6 1.4800 -4.9871 -0.0020 12 7 2.4345 -6.1037 -0.0024 13 6 3.1998 -6.1425 1.2509 14 6 4.4748 -6.9627 1.0447 15 6 5.3199 -6.8994 2.2908 16 8 4.9415 -6.2631 3.2457 17 8 6.4935 -7.5490 2.3395 18 6 1.7500 -7.3814 -0.2410 19 6 1.3933 -7.4953 -1.7008 20 6 2.3270 -7.9648 -2.6057 21 6 2.0000 -8.0688 -3.9448 22 6 0.7392 -7.7042 -4.3788 23 6 -0.1928 -7.2301 -3.4747 24 6 0.1326 -7.1307 -2.1348 25 1 -0.4850 0.8401 0.0004 26 1 0.6245 -2.5563 -0.8919 27 1 0.6240 -2.5574 0.8880 28 1 2.8711 -3.6049 0.8890 29 1 2.8723 -3.6040 -0.8910 30 1 0.8536 -5.0446 -0.8922 31 1 0.8530 -5.0450 0.8877 32 1 3.4647 -5.1274 1.5465 33 1 2.5945 -6.6022 2.0322 34 1 4.2102 -7.9997 0.8375 35 1 5.0365 -6.5561 0.2036 36 1 7.0005 -7.4786 3.1599 37 1 0.8412 -7.4244 0.3594 38 1 2.4087 -8.2041 0.0374 39 1 3.3120 -8.2497 -2.2667 40 1 2.7295 -8.4352 -4.6519 41 1 0.4837 -7.7858 -5.4250 42 1 -1.1763 -6.9411 -3.8144 43 1 -0.5967 -6.7638 -1.4278 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692462011.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:23 Heat of formation + Delta-G solvation = -80.200693 kcal Electronic energy + Delta-G solvation = -22750.326435 eV Core-core repulsion = 19373.692711 eV Total energy + Delta-G solvation = -3376.633724 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -40.37674 -39.40521 -37.55449 -36.21868 -33.83350 -32.37110 -31.87149 -30.81864 -30.00752 -26.88559 -25.61534 -23.90396 -22.54545 -22.00371 -21.17668 -20.46474 -19.74412 -18.18611 -16.91840 -16.74565 -16.23969 -16.15724 -15.32417 -15.24805 -15.09901 -14.47623 -14.21767 -14.16026 -13.72851 -13.37301 -13.04315 -12.98467 -12.50304 -12.40737 -12.22026 -11.96638 -11.65024 -11.55032 -11.27097 -11.07916 -11.00050 -10.87207 -10.77190 -10.67338 -10.48758 -10.40616 -9.55553 -9.31577 -9.02858 -8.83336 -8.69264 -8.29960 -8.16206 -5.95533 -3.97091 1.39616 1.48189 2.11675 2.87075 3.35342 3.41217 3.45228 3.77104 4.30584 4.51089 4.71521 4.84257 4.86186 4.96418 5.06476 5.16440 5.24007 5.31958 5.37735 5.40519 5.54518 5.56757 5.68604 5.70694 5.87695 5.93977 6.02984 6.07692 6.10685 6.34658 6.37685 6.51484 6.56974 6.65120 6.74017 6.79006 7.05245 7.12998 7.29746 7.33846 7.72972 7.77738 7.88029 8.05060 8.48606 9.09885 9.66629 11.15984 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.008508 B = 0.004770 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3290.213952 B = 5868.473915 C = 8533.650050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.054 0.946 9 C 0.023 3.977 10 C -0.106 4.106 11 C 0.056 3.944 12 N -0.533 5.533 13 C 0.059 3.941 14 C -0.108 4.108 15 C 0.479 3.521 16 O -0.513 6.513 17 O -0.521 6.521 18 C 0.087 3.913 19 C -0.070 4.070 20 C -0.099 4.099 21 C -0.124 4.124 22 C -0.124 4.124 23 C -0.120 4.120 24 C -0.110 4.110 25 H 0.259 0.741 26 H 0.015 0.985 27 H 0.013 0.987 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.031 0.969 32 H 0.097 0.903 33 H 0.042 0.958 34 H 0.101 0.899 35 H 0.116 0.884 36 H 0.408 0.592 37 H 0.044 0.956 38 H 0.078 0.922 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.013 -20.918 -2.686 21.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.144 4.144 11 C -0.071 4.071 12 N -0.256 5.256 13 C -0.069 4.069 14 C -0.146 4.146 15 C 0.321 3.679 16 O -0.400 6.400 17 O -0.333 6.333 18 C -0.040 4.040 19 C -0.071 4.071 20 C -0.118 4.118 21 C -0.142 4.142 22 C -0.142 4.142 23 C -0.138 4.138 24 C -0.129 4.129 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.032 0.968 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.049 0.951 32 H 0.115 0.885 33 H 0.061 0.939 34 H 0.119 0.881 35 H 0.134 0.866 36 H 0.267 0.733 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.138 0.862 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.850 -20.572 -3.148 21.618 hybrid contribution 0.184 0.955 1.139 1.498 sum 6.034 -19.617 -2.009 20.622 Atomic orbital electron populations 1.69967 1.06042 1.26479 1.51139 1.25015 0.94830 0.99196 0.95419 0.86615 0.79887 0.83560 0.78072 1.20681 1.21272 1.19891 1.21247 0.93027 0.91045 1.50193 0.92726 1.19059 0.94014 0.91373 0.97048 1.21685 0.99202 0.92720 1.00750 1.22354 0.93666 0.90519 1.00524 1.61967 1.27179 1.02800 1.33689 1.21953 0.92451 1.01924 0.90557 1.21340 0.95799 1.03622 0.93861 1.23581 0.79546 0.74928 0.89881 1.90760 1.71438 1.39578 1.38261 1.84537 1.33449 1.69500 1.45793 1.21117 0.97880 0.92680 0.92324 1.19721 0.93645 0.98366 0.95357 1.20946 0.98704 0.99232 0.92909 1.21106 0.96603 1.00714 0.95805 1.21113 0.94010 0.99757 0.99367 1.21117 0.99611 0.99660 0.93376 1.21113 0.96456 0.99307 0.96030 0.93093 0.96629 0.96834 0.93360 0.92585 0.90639 0.95120 0.88461 0.93934 0.88116 0.86568 0.73329 0.93742 0.90410 0.86219 0.86389 0.86467 0.86227 0.86238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.11 -2.23 5.12 -26.73 -0.14 -2.36 16 11 C 0.06 0.97 4.78 -3.83 -0.02 0.95 16 12 N -0.53 -7.46 4.35 -236.08 -1.03 -8.49 16 13 C 0.06 0.79 4.18 -3.82 -0.02 0.77 16 14 C -0.11 -1.11 5.85 -27.88 -0.16 -1.28 16 15 C 0.48 5.45 8.33 36.00 0.30 5.75 16 16 O -0.51 -7.76 16.68 -18.75 -0.31 -8.07 16 17 O -0.52 -4.49 13.42 -39.24 -0.53 -5.02 16 18 C 0.09 1.02 4.95 -4.98 -0.02 1.00 16 19 C -0.07 -0.86 5.03 -104.63 -0.53 -1.39 16 20 C -0.10 -1.13 9.72 -39.58 -0.38 -1.51 16 21 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 22 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 23 C -0.12 -1.41 10.05 -39.58 -0.40 -1.80 16 24 C -0.11 -1.39 8.41 -39.59 -0.33 -1.72 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 1.01 6.25 -51.93 -0.32 0.69 16 29 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 30 H 0.08 1.33 6.33 -51.93 -0.33 1.00 16 31 H 0.03 0.54 8.12 -51.93 -0.42 0.11 16 32 H 0.10 1.55 5.69 -51.93 -0.30 1.25 16 33 H 0.04 0.56 8.00 -51.93 -0.42 0.15 16 34 H 0.10 0.81 6.88 -51.93 -0.36 0.45 16 35 H 0.12 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.41 1.90 9.10 45.56 0.41 2.31 16 37 H 0.04 0.52 7.90 -51.93 -0.41 0.11 16 38 H 0.08 0.74 6.53 -51.93 -0.34 0.40 16 39 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 41 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 43 H 0.12 1.44 7.99 -52.48 -0.42 1.02 16 LS Contribution 358.31 15.07 5.40 5.40 Total: -1.00 -33.90 358.31 -9.62 -43.52 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -5.82 Total: 0.59 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -3.05 Total: -18.38 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: -0.29 Total: -35.14 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -0.84 Total: -13.09 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.90 -9.62 -43.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692462011.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.679 kcal (2) G-P(sol) polarization free energy of solvation -33.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds