Wall clock time and date at job start Tue Mar 31 2020 08:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86794 * 120.00536 * 2 1 4 4 H 1.48504 * 109.47543 * 270.00369 * 3 2 1 5 5 H 1.48505 * 109.47020 * 30.00002 * 3 2 1 6 6 H 1.48505 * 109.47486 * 150.00001 * 3 2 1 7 7 C 1.37884 * 119.99905 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00193 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99590 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46889 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47149 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.47430 * 179.97438 * 11 10 9 13 13 C 1.46897 * 111.00059 * 66.04123 * 12 11 10 14 14 C 1.53002 * 109.47287 * 199.53080 * 13 12 11 15 15 C 1.50697 * 109.47320 * 174.92851 * 14 13 12 16 16 O 1.20825 * 120.00053 * 359.97438 * 15 14 13 17 17 O 1.34225 * 119.99826 * 180.02562 * 15 14 13 18 18 C 1.46904 * 111.00334 * 190.00030 * 12 11 10 19 19 C 1.50696 * 109.47232 * 75.82299 * 18 12 11 20 20 C 1.38241 * 119.99539 * 84.40809 * 19 18 12 21 21 C 1.38232 * 119.99590 * 180.02562 * 20 19 18 22 22 C 1.38238 * 120.00315 * 359.94906 * 21 20 19 23 23 C 1.38235 * 119.99990 * 0.28253 * 22 21 20 24 24 C 1.38229 * 120.00578 * 264.38477 * 19 18 12 25 25 H 0.97005 * 119.99489 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47391 * 59.99434 * 9 7 2 27 27 H 1.08997 * 109.46702 * 299.99504 * 9 7 2 28 28 H 1.08999 * 109.47619 * 59.99508 * 10 9 7 29 29 H 1.09008 * 109.46648 * 299.99582 * 10 9 7 30 30 H 1.08999 * 109.47229 * 59.99309 * 11 10 9 31 31 H 1.08999 * 109.47086 * 299.99692 * 11 10 9 32 32 H 1.08994 * 109.47522 * 319.52930 * 13 12 11 33 33 H 1.09000 * 109.47282 * 79.53205 * 13 12 11 34 34 H 1.09004 * 109.46799 * 294.92689 * 14 13 12 35 35 H 1.09006 * 109.47295 * 54.92290 * 14 13 12 36 36 H 0.96700 * 116.99893 * 179.97438 * 17 15 14 37 37 H 1.09002 * 109.46580 * 315.82616 * 18 12 11 38 38 H 1.09003 * 109.47050 * 195.83059 * 18 12 11 39 39 H 1.07994 * 120.00311 * 359.97438 * 20 19 18 40 40 H 1.08006 * 119.99981 * 179.97438 * 21 20 19 41 41 H 1.08001 * 119.99726 * 180.02562 * 22 21 20 42 42 H 1.07992 * 120.00391 * 179.72184 * 23 22 21 43 43 H 1.08006 * 119.99492 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2450 -3.6621 -0.0015 11 6 1.4800 -4.9871 -0.0020 12 7 2.4345 -6.1037 -0.0024 13 6 3.1998 -6.1425 1.2509 14 6 4.4748 -6.9627 1.0447 15 6 5.3199 -6.8994 2.2908 16 8 4.9415 -6.2631 3.2457 17 8 6.4935 -7.5490 2.3395 18 6 1.7500 -7.3814 -0.2410 19 6 1.3933 -7.4953 -1.7008 20 6 2.3270 -7.9648 -2.6057 21 6 2.0000 -8.0688 -3.9448 22 6 0.7392 -7.7042 -4.3788 23 6 -0.1928 -7.2301 -3.4747 24 6 0.1326 -7.1307 -2.1348 25 1 -0.4850 0.8401 0.0004 26 1 0.6245 -2.5563 -0.8919 27 1 0.6240 -2.5574 0.8880 28 1 2.8711 -3.6049 0.8890 29 1 2.8723 -3.6040 -0.8910 30 1 0.8536 -5.0446 -0.8922 31 1 0.8530 -5.0450 0.8877 32 1 3.4647 -5.1274 1.5465 33 1 2.5945 -6.6022 2.0322 34 1 4.2102 -7.9997 0.8375 35 1 5.0365 -6.5561 0.2036 36 1 7.0005 -7.4786 3.1599 37 1 0.8412 -7.4244 0.3594 38 1 2.4087 -8.2041 0.0374 39 1 3.3120 -8.2497 -2.2667 40 1 2.7295 -8.4352 -4.6519 41 1 0.4837 -7.7858 -5.4250 42 1 -1.1763 -6.9411 -3.8144 43 1 -0.5967 -6.7638 -1.4278 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692462011.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:16 Heat of formation + Delta-G solvation = -101.407109 kcal Electronic energy + Delta-G solvation = -22751.246014 eV Core-core repulsion = 19373.692711 eV Total energy + Delta-G solvation = -3377.553303 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 3.47 seconds Orbital eigenvalues (eV) -41.27735 -40.32098 -38.65085 -37.07721 -35.79177 -33.68470 -33.27392 -31.68308 -31.26583 -28.54390 -26.69297 -25.47565 -23.49490 -23.32438 -22.08089 -21.83402 -21.06677 -19.05906 -18.50717 -17.73988 -17.58250 -17.13617 -16.62005 -16.39307 -16.18305 -16.05797 -15.49805 -15.26151 -14.93510 -14.35196 -14.23172 -14.06948 -13.86710 -13.62124 -13.48181 -13.23481 -12.99611 -12.87130 -12.60505 -12.52092 -12.44759 -12.32486 -12.05052 -11.78546 -11.73603 -11.61044 -11.40616 -11.31125 -11.08946 -10.55060 -9.70773 -9.60049 -9.30688 -8.20532 -6.31329 0.51772 0.61569 1.24889 1.38641 1.40356 1.51476 2.07318 2.40442 2.85445 3.12536 3.27376 3.79830 3.91422 3.97750 4.05315 4.20135 4.25648 4.31161 4.35918 4.45897 4.48627 4.62800 4.71298 4.72699 4.74930 4.81230 4.89000 4.90981 5.07383 5.09894 5.21195 5.25417 5.26393 5.50936 5.65848 5.65988 5.71870 5.73416 5.78142 5.85375 6.04414 6.10586 6.24114 6.26846 6.84981 7.03066 7.37661 8.91469 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.008508 B = 0.004770 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3290.213952 B = 5868.473915 C = 8533.650050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.057 0.943 9 C 0.027 3.973 10 C -0.089 4.089 11 C 0.070 3.930 12 N -0.528 5.528 13 C 0.060 3.940 14 C -0.100 4.100 15 C 0.486 3.514 16 O -0.558 6.558 17 O -0.511 6.511 18 C 0.089 3.911 19 C -0.084 4.084 20 C -0.105 4.105 21 C -0.129 4.129 22 C -0.131 4.131 23 C -0.135 4.135 24 C -0.132 4.132 25 H 0.264 0.736 26 H -0.009 1.009 27 H -0.012 1.012 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.023 0.977 32 H 0.066 0.934 33 H 0.042 0.958 34 H 0.133 0.867 35 H 0.126 0.874 36 H 0.427 0.573 37 H 0.042 0.958 38 H 0.108 0.892 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.138 0.862 42 H 0.128 0.872 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.056 -22.144 -3.530 23.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.075 0.925 9 C -0.010 4.010 10 C -0.127 4.127 11 C -0.058 4.058 12 N -0.252 5.252 13 C -0.068 4.068 14 C -0.138 4.138 15 C 0.330 3.670 16 O -0.450 6.450 17 O -0.324 6.324 18 C -0.037 4.037 19 C -0.085 4.085 20 C -0.123 4.123 21 C -0.147 4.147 22 C -0.149 4.149 23 C -0.153 4.153 24 C -0.151 4.151 25 H 0.072 0.928 26 H 0.010 0.990 27 H 0.006 0.994 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.151 0.849 35 H 0.144 0.856 36 H 0.288 0.712 37 H 0.060 0.940 38 H 0.126 0.874 39 H 0.159 0.841 40 H 0.161 0.839 41 H 0.156 0.844 42 H 0.146 0.854 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.926 -21.833 -3.995 23.568 hybrid contribution -0.448 1.273 1.381 1.931 sum 7.478 -20.559 -2.613 22.033 Atomic orbital electron populations 1.70097 1.07767 1.27731 1.51729 1.25969 0.95777 1.03303 0.94693 0.85466 0.78642 0.78474 0.78594 1.19566 1.20596 1.18924 1.21672 0.93427 0.92439 1.50489 0.92465 1.18947 0.94370 0.93130 0.94576 1.21411 0.97962 0.92917 1.00421 1.22012 0.93594 0.90235 0.99964 1.61899 1.26370 1.02900 1.34035 1.21882 0.93907 1.00861 0.90121 1.21270 0.94099 1.04805 0.93582 1.23702 0.79918 0.73970 0.89399 1.90758 1.72609 1.41679 1.39928 1.84489 1.32432 1.68421 1.47056 1.21202 0.98335 0.91959 0.92247 1.19841 0.93796 0.99064 0.95803 1.21244 0.99323 0.98693 0.93053 1.21469 0.96966 1.00019 0.96204 1.21439 0.94049 0.99099 1.00306 1.21350 1.00530 1.00069 0.93383 1.21247 0.97005 1.00262 0.96542 0.92770 0.99013 0.99364 0.93473 0.92912 0.91162 0.95860 0.91566 0.94014 0.84900 0.85636 0.71193 0.93980 0.87360 0.84140 0.83931 0.84444 0.85390 0.86940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.19 13.29 21.45 0.28 -57.90 16 2 C 0.00 0.01 5.46 84.66 0.46 0.47 16 3 Si 0.96 45.54 29.54 68.60 2.03 47.57 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.54 -32.11 9.11 25.60 0.23 -31.88 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.03 1.51 4.97 29.85 0.15 1.65 16 10 C -0.09 -3.87 5.12 30.59 0.16 -3.72 16 11 C 0.07 2.46 4.78 86.30 0.41 2.88 16 12 N -0.53 -14.36 4.35 -900.81 -3.92 -18.28 16 13 C 0.06 1.56 4.18 86.30 0.36 1.92 16 14 C -0.10 -1.81 5.85 29.85 0.17 -1.63 16 15 C 0.49 10.19 8.33 71.24 0.59 10.79 16 16 O -0.56 -16.67 16.68 21.97 0.37 -16.30 16 17 O -0.51 -7.41 13.42 -51.37 -0.69 -8.10 16 18 C 0.09 1.95 4.95 85.55 0.42 2.37 16 19 C -0.08 -1.97 5.03 -19.87 -0.10 -2.07 16 20 C -0.10 -2.12 9.72 22.27 0.22 -1.90 16 21 C -0.13 -2.46 10.05 22.27 0.22 -2.23 16 22 C -0.13 -2.66 10.05 22.27 0.22 -2.43 16 23 C -0.14 -3.14 10.05 22.27 0.22 -2.91 16 24 C -0.13 -3.33 8.41 22.27 0.19 -3.14 16 25 H 0.26 15.38 8.31 -92.70 -0.77 14.61 16 26 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 27 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 28 H 0.05 2.04 6.25 -2.39 -0.01 2.03 16 29 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16 30 H 0.07 2.56 6.33 -2.39 -0.02 2.55 16 31 H 0.02 0.85 8.12 -2.39 -0.02 0.83 16 32 H 0.07 2.14 5.69 -2.39 -0.01 2.13 16 33 H 0.04 1.08 8.00 -2.39 -0.02 1.06 16 34 H 0.13 1.57 6.88 -2.38 -0.02 1.56 16 35 H 0.13 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.43 2.91 9.10 -74.06 -0.67 2.24 16 37 H 0.04 0.95 7.90 -2.39 -0.02 0.93 16 38 H 0.11 1.70 6.53 -2.39 -0.02 1.68 16 39 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 40 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 41 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 42 H 0.13 2.59 8.06 -2.91 -0.02 2.56 16 43 H 0.11 2.86 7.99 -2.91 -0.02 2.84 16 Total: -1.00 -74.68 358.31 2.33 -72.35 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 0.33 Total: 12.52 kcal Atomic # 6 Polarization: -35.79 SS G_CDS: 3.94 Total: -31.85 kcal Atomic # 7 Polarization: -72.54 SS G_CDS: -3.64 Total: -76.18 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.32 Total: -24.41 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -74.68 2.33 -72.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692462011.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.059 kcal (2) G-P(sol) polarization free energy of solvation -74.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.47 seconds