Wall clock time and date at job start Tue Mar 31 2020 08:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86798 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46770 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47142 * 299.99913 * 3 2 1 6 6 H 1.48498 * 109.47243 * 60.00111 * 3 2 1 7 7 C 1.38655 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00108 * 180.02562 * 7 2 1 9 9 O 1.34830 * 119.99738 * 0.02562 * 7 2 1 10 10 C 1.35757 * 116.99613 * 185.38509 * 9 7 2 11 11 C 1.38883 * 120.06698 * 185.97840 * 10 9 7 12 12 C 1.38101 * 119.92988 * 180.24992 * 11 10 9 13 13 C 1.38304 * 120.06569 * 359.47378 * 12 11 10 14 14 C 1.50700 * 119.92795 * 180.29140 * 13 12 11 15 15 N 1.46905 * 109.46677 * 85.84515 * 14 13 12 16 16 C 1.46903 * 110.99737 * 284.71146 * 15 14 13 17 17 C 1.53006 * 109.46909 * 288.87402 * 16 15 14 18 18 O 1.42900 * 109.47060 * 66.57689 * 17 16 15 19 19 C 1.46899 * 110.99864 * 160.75929 * 15 14 13 20 20 C 1.53003 * 109.46939 * 189.99877 * 19 15 14 21 21 C 1.53004 * 117.49745 * 243.62315 * 20 19 15 22 22 C 1.52999 * 60.00027 * 252.50994 * 21 20 19 23 23 C 1.38296 * 120.13967 * 0.27911 * 13 12 11 24 24 C 1.38100 * 120.07105 * 359.97331 * 23 13 12 25 25 H 0.96997 * 120.00061 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.03626 * 0.02562 * 11 10 9 27 27 H 1.07991 * 119.96754 * 179.75031 * 12 11 10 28 28 H 1.09003 * 109.47017 * 205.83868 * 14 13 12 29 29 H 1.08995 * 109.47549 * 325.84524 * 14 13 12 30 30 H 1.08999 * 109.47618 * 48.87666 * 16 15 14 31 31 H 1.09003 * 109.46988 * 168.87652 * 16 15 14 32 32 H 1.08998 * 109.46836 * 186.56991 * 17 16 15 33 33 H 1.08991 * 109.47335 * 306.57033 * 17 16 15 34 34 H 0.96696 * 114.00184 * 179.97438 * 18 17 16 35 35 H 1.08994 * 109.47102 * 309.99499 * 19 15 14 36 36 H 1.09000 * 109.47204 * 70.00189 * 19 15 14 37 37 H 1.08994 * 115.55296 * 29.32787 * 20 19 15 38 38 H 1.09009 * 117.49890 * 359.97438 * 21 20 19 39 39 H 1.08994 * 117.50312 * 145.02283 * 21 20 19 40 40 H 1.08999 * 117.50362 * 252.51109 * 22 21 20 41 41 H 1.08996 * 117.50067 * 107.48793 * 22 21 20 42 42 H 1.07999 * 119.96747 * 180.02562 * 23 13 12 43 43 H 1.07999 * 120.03880 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3464 0.0006 5 1 1.8908 2.3964 -1.2125 6 1 1.8908 2.3964 1.2125 7 6 2.0089 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0695 -3.5042 0.1146 11 6 1.4559 -4.7446 -0.0027 12 6 2.2052 -5.8983 0.1189 13 6 3.5671 -5.8192 0.3465 14 6 4.3828 -7.0801 0.4722 15 7 4.7921 -7.5336 -0.8638 16 6 3.6664 -8.1504 -1.5782 17 6 3.3378 -9.5024 -0.9417 18 8 2.8377 -9.2973 0.3811 19 6 5.9317 -8.4568 -0.7801 20 6 6.4864 -8.7108 -2.1832 21 6 6.4059 -10.1387 -2.7268 22 6 7.7551 -9.5581 -2.2987 23 6 4.1818 -4.5855 0.4587 24 6 3.4372 -3.4282 0.3432 25 1 -0.4850 0.8400 0.0004 26 1 0.3933 -4.8070 -0.1853 27 1 1.7280 -6.8631 0.0318 28 1 5.2686 -6.8812 1.0755 29 1 3.7835 -7.8545 0.9510 30 1 2.7953 -7.4981 -1.5158 31 1 3.9363 -8.2971 -2.6240 32 1 2.5828 -10.0119 -1.5405 33 1 4.2399 -10.1126 -0.8986 34 1 2.6077 -10.1136 0.8457 35 1 6.7099 -8.0177 -0.1559 36 1 5.6040 -9.3999 -0.3427 37 1 6.3605 -7.8938 -2.8936 38 1 5.9582 -10.8973 -2.0846 39 1 6.2269 -10.2613 -3.7950 40 1 8.4638 -9.2986 -3.0851 41 1 8.1947 -9.9345 -1.3750 42 1 5.2456 -4.5270 0.6360 43 1 3.9179 -2.4651 0.4305 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731847180.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:23 Heat of formation + Delta-G solvation = -12.704313 kcal Electronic energy + Delta-G solvation = -23109.482937 eV Core-core repulsion = 19735.776076 eV Total energy + Delta-G solvation = -3373.706861 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.53111 -38.63607 -37.10362 -36.43608 -34.98455 -32.23510 -30.41621 -29.95426 -29.02774 -26.48497 -25.26927 -24.01048 -22.62231 -22.05710 -21.64849 -20.15270 -19.72486 -17.95679 -17.62184 -16.81375 -16.51032 -16.06374 -15.07857 -14.77482 -14.47061 -14.38014 -14.00248 -13.66672 -13.54170 -13.42567 -13.08420 -12.60581 -12.52142 -12.49232 -12.23627 -11.77657 -11.66696 -11.57085 -11.41217 -11.17629 -11.07687 -10.74560 -10.61595 -10.45737 -10.30213 -10.25064 -10.12245 -9.91334 -9.23610 -8.74784 -8.03812 -7.97319 -7.02582 -6.37160 -3.95336 2.36787 2.44264 3.17123 3.18655 3.24306 3.58415 3.96461 4.03614 4.18282 4.60006 4.71287 4.76385 4.83894 4.95398 5.07777 5.17941 5.25709 5.35018 5.37103 5.39750 5.45738 5.49945 5.59582 5.68465 5.77034 5.79925 5.87302 5.95222 6.05543 6.09620 6.15913 6.35473 6.37216 6.58479 6.87626 7.05009 7.17842 7.20840 7.30223 7.42637 7.46633 7.56353 7.60868 7.98734 8.08996 9.09199 9.81821 10.81475 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025476 B = 0.003205 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.831138 B = 8733.535157 C = 9388.561565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.037 3.963 3 Si 0.939 3.061 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.388 4.388 8 H 0.091 0.909 9 O -0.182 6.182 10 C 0.153 3.847 11 C -0.196 4.196 12 C -0.065 4.065 13 C -0.166 4.166 14 C 0.091 3.909 15 N -0.523 5.523 16 C 0.051 3.949 17 C 0.034 3.966 18 O -0.557 6.557 19 C 0.079 3.921 20 C -0.141 4.141 21 C -0.187 4.187 22 C -0.180 4.180 23 C -0.058 4.058 24 C -0.235 4.235 25 H 0.268 0.732 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.044 0.956 33 H 0.049 0.951 34 H 0.367 0.633 35 H 0.074 0.926 36 H 0.037 0.963 37 H 0.113 0.887 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.995 -20.131 -2.209 23.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.465 4.465 8 H 0.109 0.891 9 O -0.086 6.086 10 C 0.100 3.900 11 C -0.216 4.216 12 C -0.083 4.083 13 C -0.167 4.167 14 C -0.034 4.034 15 N -0.246 5.246 16 C -0.078 4.078 17 C -0.045 4.045 18 O -0.363 6.363 19 C -0.049 4.049 20 C -0.160 4.160 21 C -0.224 4.224 22 C -0.218 4.218 23 C -0.076 4.076 24 C -0.254 4.254 25 H 0.078 0.922 26 H 0.131 0.869 27 H 0.131 0.869 28 H 0.078 0.922 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.214 0.786 35 H 0.092 0.908 36 H 0.055 0.945 37 H 0.131 0.869 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.121 0.879 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 10.830 -18.862 -2.655 21.912 hybrid contribution 0.222 -0.465 0.465 0.694 sum 11.052 -19.327 -2.190 22.372 Atomic orbital electron populations 1.70054 1.05921 1.27366 1.46794 1.25270 0.95820 0.98761 0.96780 0.85667 0.79173 0.80547 0.78162 1.19123 1.20214 1.20238 1.21354 0.91770 0.80940 1.52390 0.89147 1.83991 1.34262 1.11467 1.78886 1.19400 0.90394 0.87922 0.92280 1.20195 0.99763 0.90183 1.11423 1.20566 0.93245 0.96567 0.97970 1.19116 0.93534 0.93506 1.10547 1.21281 0.98091 0.95609 0.88442 1.62178 1.05876 1.37025 1.19520 1.22384 0.95387 0.92528 0.97479 1.23100 0.97300 1.00059 0.84050 1.86638 1.86545 1.35179 1.27926 1.21757 0.93559 0.95138 0.94430 1.22355 1.00595 0.94211 0.98800 1.23044 1.01104 0.96878 1.01340 1.22929 0.91099 1.04659 1.03088 1.20594 0.97955 0.91771 0.97327 1.21141 0.94322 0.98774 1.11189 0.92214 0.86881 0.86918 0.92196 0.89943 0.89009 0.89762 0.93769 0.93287 0.78599 0.90768 0.94478 0.86920 0.89317 0.88992 0.88851 0.89044 0.87869 0.85822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.00 13.67 55.48 0.76 -25.25 16 2 C 0.04 1.05 5.49 -17.51 -0.10 0.95 16 3 Si 0.94 21.08 29.55 -169.99 -5.02 16.05 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.39 -11.18 9.44 30.89 0.29 -10.89 16 8 H 0.09 2.43 5.29 -52.49 -0.28 2.16 16 9 O -0.18 -5.38 9.76 0.03 0.00 -5.38 16 10 C 0.15 3.86 6.65 -39.11 -0.26 3.60 16 11 C -0.20 -4.35 9.99 -39.39 -0.39 -4.75 16 12 C -0.06 -1.22 8.21 -39.61 -0.33 -1.55 16 13 C -0.17 -3.00 5.23 -104.58 -0.55 -3.55 16 14 C 0.09 1.34 5.03 -4.97 -0.03 1.31 16 15 N -0.52 -6.85 4.63 -236.06 -1.09 -7.94 16 16 C 0.05 0.61 5.54 -3.82 -0.02 0.59 16 17 C 0.03 0.32 6.77 37.16 0.25 0.57 16 18 O -0.56 -5.69 10.34 -35.23 -0.36 -6.06 16 19 C 0.08 0.84 4.84 -3.82 -0.02 0.82 16 20 C -0.14 -1.33 4.92 -90.62 -0.45 -1.78 16 21 C -0.19 -1.45 9.99 -26.73 -0.27 -1.72 16 22 C -0.18 -1.43 10.25 -26.73 -0.27 -1.70 16 23 C -0.06 -1.13 9.67 -39.61 -0.38 -1.51 16 24 C -0.23 -5.37 9.13 -39.40 -0.36 -5.73 16 25 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.11 2.43 8.06 -52.49 -0.42 2.01 16 27 H 0.11 1.90 7.19 -52.49 -0.38 1.52 16 28 H 0.06 0.84 7.66 -51.93 -0.40 0.44 16 29 H 0.08 1.19 4.55 -51.91 -0.24 0.95 16 30 H 0.09 1.31 5.36 -51.93 -0.28 1.04 16 31 H 0.08 0.93 7.52 -51.93 -0.39 0.54 16 32 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.42 5.01 -51.93 -0.26 0.16 16 34 H 0.37 2.20 9.12 45.59 0.42 2.61 16 35 H 0.07 0.80 7.83 -51.93 -0.41 0.39 16 36 H 0.04 0.37 5.44 -51.93 -0.28 0.09 16 37 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.09 0.64 7.43 -51.92 -0.39 0.26 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 43 H 0.12 2.84 5.71 -52.49 -0.30 2.54 16 LS Contribution 343.69 15.07 5.18 5.18 Total: -1.00 -32.13 343.69 -8.69 -40.81 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -5.27 Total: 7.90 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: -2.87 Total: -25.33 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: -0.34 Total: -33.19 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: -0.36 Total: -11.44 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.13 -8.69 -40.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731847180.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.109 kcal (2) G-P(sol) polarization free energy of solvation -32.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds