Wall clock time and date at job start Tue Mar 31 2020 08:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86798 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46770 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47142 * 299.99913 * 3 2 1 6 6 H 1.48498 * 109.47243 * 60.00111 * 3 2 1 7 7 C 1.38655 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00108 * 180.02562 * 7 2 1 9 9 O 1.34830 * 119.99738 * 0.02562 * 7 2 1 10 10 C 1.35757 * 116.99613 * 185.38509 * 9 7 2 11 11 C 1.38883 * 120.06698 * 185.97840 * 10 9 7 12 12 C 1.38101 * 119.92988 * 180.24992 * 11 10 9 13 13 C 1.38304 * 120.06569 * 359.47378 * 12 11 10 14 14 C 1.50700 * 119.92795 * 180.29140 * 13 12 11 15 15 N 1.46905 * 109.46677 * 85.84515 * 14 13 12 16 16 C 1.46903 * 110.99737 * 284.71146 * 15 14 13 17 17 C 1.53006 * 109.46909 * 288.87402 * 16 15 14 18 18 O 1.42900 * 109.47060 * 66.57689 * 17 16 15 19 19 C 1.46899 * 110.99864 * 160.75929 * 15 14 13 20 20 C 1.53003 * 109.46939 * 189.99877 * 19 15 14 21 21 C 1.53004 * 117.49745 * 243.62315 * 20 19 15 22 22 C 1.52999 * 60.00027 * 252.50994 * 21 20 19 23 23 C 1.38296 * 120.13967 * 0.27911 * 13 12 11 24 24 C 1.38100 * 120.07105 * 359.97331 * 23 13 12 25 25 H 0.96997 * 120.00061 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.03626 * 0.02562 * 11 10 9 27 27 H 1.07991 * 119.96754 * 179.75031 * 12 11 10 28 28 H 1.09003 * 109.47017 * 205.83868 * 14 13 12 29 29 H 1.08995 * 109.47549 * 325.84524 * 14 13 12 30 30 H 1.08999 * 109.47618 * 48.87666 * 16 15 14 31 31 H 1.09003 * 109.46988 * 168.87652 * 16 15 14 32 32 H 1.08998 * 109.46836 * 186.56991 * 17 16 15 33 33 H 1.08991 * 109.47335 * 306.57033 * 17 16 15 34 34 H 0.96696 * 114.00184 * 179.97438 * 18 17 16 35 35 H 1.08994 * 109.47102 * 309.99499 * 19 15 14 36 36 H 1.09000 * 109.47204 * 70.00189 * 19 15 14 37 37 H 1.08994 * 115.55296 * 29.32787 * 20 19 15 38 38 H 1.09009 * 117.49890 * 359.97438 * 21 20 19 39 39 H 1.08994 * 117.50312 * 145.02283 * 21 20 19 40 40 H 1.08999 * 117.50362 * 252.51109 * 22 21 20 41 41 H 1.08996 * 117.50067 * 107.48793 * 22 21 20 42 42 H 1.07999 * 119.96747 * 180.02562 * 23 13 12 43 43 H 1.07999 * 120.03880 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3464 0.0006 5 1 1.8908 2.3964 -1.2125 6 1 1.8908 2.3964 1.2125 7 6 2.0089 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0695 -3.5042 0.1146 11 6 1.4559 -4.7446 -0.0027 12 6 2.2052 -5.8983 0.1189 13 6 3.5671 -5.8192 0.3465 14 6 4.3828 -7.0801 0.4722 15 7 4.7921 -7.5336 -0.8638 16 6 3.6664 -8.1504 -1.5782 17 6 3.3378 -9.5024 -0.9417 18 8 2.8377 -9.2973 0.3811 19 6 5.9317 -8.4568 -0.7801 20 6 6.4864 -8.7108 -2.1832 21 6 6.4059 -10.1387 -2.7268 22 6 7.7551 -9.5581 -2.2987 23 6 4.1818 -4.5855 0.4587 24 6 3.4372 -3.4282 0.3432 25 1 -0.4850 0.8400 0.0004 26 1 0.3933 -4.8070 -0.1853 27 1 1.7280 -6.8631 0.0318 28 1 5.2686 -6.8812 1.0755 29 1 3.7835 -7.8545 0.9510 30 1 2.7953 -7.4981 -1.5158 31 1 3.9363 -8.2971 -2.6240 32 1 2.5828 -10.0119 -1.5405 33 1 4.2399 -10.1126 -0.8986 34 1 2.6077 -10.1136 0.8457 35 1 6.7099 -8.0177 -0.1559 36 1 5.6040 -9.3999 -0.3427 37 1 6.3605 -7.8938 -2.8936 38 1 5.9582 -10.8973 -2.0846 39 1 6.2269 -10.2613 -3.7950 40 1 8.4638 -9.2986 -3.0851 41 1 8.1947 -9.9345 -1.3750 42 1 5.2456 -4.5270 0.6360 43 1 3.9179 -2.4651 0.4305 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731847180.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:20 Heat of formation + Delta-G solvation = -35.002137 kcal Electronic energy + Delta-G solvation = -23110.449844 eV Core-core repulsion = 19735.776076 eV Total energy + Delta-G solvation = -3374.673767 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -40.89989 -40.02040 -38.26260 -37.61682 -35.98803 -34.28048 -31.93165 -31.58079 -29.98458 -27.88040 -27.02760 -25.14087 -23.60039 -23.19804 -22.95975 -21.55862 -20.58693 -19.81923 -18.80030 -18.42020 -17.36377 -16.94677 -16.44279 -16.24063 -16.11662 -15.58639 -15.41531 -15.22553 -14.87813 -14.57390 -14.33721 -14.12389 -14.02325 -13.57739 -13.39663 -13.18846 -12.92169 -12.61234 -12.50171 -12.45746 -12.31223 -12.23193 -12.09542 -11.95547 -11.76756 -11.14932 -11.12116 -10.81886 -10.77197 -10.64117 -9.71223 -9.04234 -8.77288 -8.45862 -6.13520 0.65054 0.74745 1.35046 1.43655 1.53742 2.18904 2.75583 2.94921 3.09003 3.35320 3.45548 3.55848 3.90630 4.05605 4.10026 4.15691 4.17716 4.23071 4.28727 4.29680 4.52542 4.58377 4.62203 4.64754 4.71456 4.82650 4.83936 4.87132 4.97974 5.05858 5.09560 5.16185 5.21348 5.26521 5.30628 5.40210 5.43508 5.64389 5.75729 5.91309 6.05304 6.24761 6.28903 6.37546 6.94625 6.99203 7.81615 8.78082 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025476 B = 0.003205 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.831138 B = 8733.535157 C = 9388.561565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.252 1.252 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.411 4.411 8 H 0.099 0.901 9 O -0.235 6.235 10 C 0.112 3.888 11 C -0.207 4.207 12 C -0.054 4.054 13 C -0.141 4.141 14 C 0.095 3.905 15 N -0.538 5.538 16 C 0.047 3.953 17 C 0.042 3.958 18 O -0.578 6.578 19 C 0.084 3.916 20 C -0.155 4.155 21 C -0.176 4.176 22 C -0.175 4.175 23 C -0.059 4.059 24 C -0.243 4.243 25 H 0.272 0.728 26 H 0.109 0.891 27 H 0.139 0.861 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.387 0.613 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.133 0.867 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.541 -22.655 -2.104 26.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.176 1.176 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.487 4.487 8 H 0.116 0.884 9 O -0.142 6.142 10 C 0.062 3.938 11 C -0.226 4.226 12 C -0.072 4.072 13 C -0.143 4.143 14 C -0.031 4.031 15 N -0.261 5.261 16 C -0.081 4.081 17 C -0.037 4.037 18 O -0.387 6.387 19 C -0.043 4.043 20 C -0.174 4.174 21 C -0.213 4.213 22 C -0.212 4.212 23 C -0.078 4.078 24 C -0.262 4.262 25 H 0.081 0.919 26 H 0.128 0.872 27 H 0.157 0.843 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.238 0.762 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.151 0.849 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 13.404 -21.462 -2.548 25.432 hybrid contribution -0.464 -0.051 0.418 0.627 sum 12.941 -21.513 -2.130 25.195 Atomic orbital electron populations 1.70196 1.08013 1.28668 1.49240 1.26592 0.96871 1.02709 0.95958 0.84524 0.78186 0.74832 0.78614 1.17585 1.19251 1.19235 1.21830 0.92404 0.81559 1.52955 0.88398 1.83947 1.35868 1.12603 1.81775 1.19897 0.91626 0.87825 0.94445 1.20435 1.00132 0.90403 1.11632 1.20834 0.93599 0.96361 0.96426 1.19656 0.93544 0.94823 1.06229 1.21252 0.98165 0.93835 0.89839 1.62064 1.06932 1.38816 1.18318 1.22367 0.94065 0.93475 0.98234 1.22967 0.98372 0.98431 0.83910 1.86511 1.86687 1.37187 1.28302 1.21744 0.92358 0.94997 0.95174 1.22202 1.02443 0.94760 0.97993 1.23107 1.00742 0.95667 1.01811 1.23007 0.90970 1.03619 1.03617 1.20927 0.99254 0.91096 0.96474 1.21226 0.93664 0.99800 1.11517 0.91873 0.87239 0.84303 0.91044 0.88919 0.91628 0.89058 0.92438 0.91815 0.76217 0.90934 0.93199 0.88678 0.88277 0.88543 0.88458 0.88197 0.84926 0.86676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.18 13.67 21.61 0.30 -57.88 16 2 C -0.02 -1.43 5.49 84.83 0.47 -0.96 16 3 Si 1.02 44.26 29.55 68.60 2.03 46.28 16 4 H -0.25 -10.18 7.11 99.48 0.71 -9.48 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 7 C -0.41 -24.92 9.44 67.92 0.64 -24.28 16 8 H 0.10 5.51 5.29 -2.92 -0.02 5.49 16 9 O -0.23 -14.78 9.76 -22.82 -0.22 -15.00 16 10 C 0.11 5.91 6.65 22.58 0.15 6.06 16 11 C -0.21 -9.43 9.99 22.39 0.22 -9.21 16 12 C -0.05 -1.98 8.21 22.25 0.18 -1.80 16 13 C -0.14 -4.84 5.23 -19.83 -0.10 -4.95 16 14 C 0.10 2.48 5.03 85.56 0.43 2.91 16 15 N -0.54 -12.59 4.63 -900.77 -4.17 -16.76 16 16 C 0.05 1.01 5.54 86.30 0.48 1.49 16 17 C 0.04 0.65 6.77 71.98 0.49 1.13 16 18 O -0.58 -9.70 10.34 -148.98 -1.54 -11.24 16 19 C 0.08 1.51 4.84 86.30 0.42 1.93 16 20 C -0.16 -2.53 4.92 -10.79 -0.05 -2.58 16 21 C -0.18 -2.16 9.99 30.60 0.31 -1.86 16 22 C -0.17 -2.24 10.25 30.59 0.31 -1.93 16 23 C -0.06 -2.23 9.67 22.25 0.22 -2.02 16 24 C -0.24 -11.34 9.13 22.39 0.20 -11.13 16 25 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 26 H 0.11 4.95 8.06 -2.91 -0.02 4.92 16 27 H 0.14 4.40 7.19 -2.92 -0.02 4.38 16 28 H 0.07 1.73 7.66 -2.39 -0.02 1.71 16 29 H 0.09 2.32 4.55 -2.37 -0.01 2.31 16 30 H 0.07 1.75 5.36 -2.39 -0.01 1.74 16 31 H 0.09 1.82 7.52 -2.39 -0.02 1.80 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.81 5.01 -2.39 -0.01 0.80 16 34 H 0.39 3.15 9.12 -74.01 -0.67 2.48 16 35 H 0.07 1.32 7.83 -2.39 -0.02 1.31 16 36 H 0.05 0.78 5.44 -2.39 -0.01 0.76 16 37 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.10 1.03 7.43 -2.38 -0.02 1.01 16 39 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.10 1.12 8.14 -2.39 -0.02 1.11 16 42 H 0.13 4.24 8.06 -2.91 -0.02 4.21 16 43 H 0.12 5.47 5.71 -2.91 -0.02 5.46 16 Total: -1.00 -73.91 343.69 1.10 -72.81 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 0.36 Total: 28.97 kcal Atomic # 6 Polarization: -51.54 SS G_CDS: 4.36 Total: -47.18 kcal Atomic # 7 Polarization: -70.77 SS G_CDS: -3.88 Total: -74.64 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -1.76 Total: -26.24 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -73.91 1.10 -72.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731847180.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.804 kcal (2) G-P(sol) polarization free energy of solvation -73.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds