Wall clock time and date at job start Tue Mar 31 2020 06:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.39254 * 2 1 4 4 C 1.52892 * 109.38958 * 240.28565 * 2 1 3 5 5 N 1.47158 * 108.49959 * 189.44196 * 4 2 1 6 6 C 1.46906 * 111.00221 * 194.70017 * 5 4 2 7 7 C 1.52999 * 109.46904 * 303.04487 * 6 5 4 8 8 C 1.53006 * 109.46626 * 179.97438 * 7 6 5 9 9 S 1.81003 * 109.46900 * 179.97438 * 8 7 6 10 10 C 1.76196 * 99.99843 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00031 * 359.97438 * 10 9 8 12 12 C 1.38802 * 119.99637 * 180.02562 * 10 9 8 13 13 N 1.31628 * 120.00514 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99567 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47216 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46911 * 120.00106 * 14 12 10 17 17 H 1.48506 * 109.47215 * 239.99864 * 14 12 10 18 18 C 1.46630 * 110.26390 * 71.27510 * 5 4 2 19 19 C 1.50623 * 110.50332 * 307.54256 * 18 5 4 20 20 C 1.38735 * 118.42567 * 197.34786 * 19 18 5 21 21 C 1.38017 * 120.37548 * 180.17531 * 20 19 18 22 22 C 1.38256 * 119.87508 * 0.02562 * 21 20 19 23 23 C 1.38040 * 119.82432 * 359.92026 * 22 21 20 24 24 C 1.37831 * 121.85059 * 17.40329 * 19 18 5 25 25 H 1.09004 * 109.46926 * 300.20001 * 1 2 3 26 26 H 1.09002 * 109.46871 * 60.19700 * 1 2 3 27 27 H 1.08997 * 109.46916 * 180.19829 * 1 2 3 28 28 H 1.08994 * 109.63511 * 69.73435 * 4 2 1 29 29 H 1.09007 * 109.62593 * 309.14142 * 4 2 1 30 30 H 1.08993 * 109.47034 * 183.03797 * 6 5 4 31 31 H 1.09000 * 109.46693 * 63.04138 * 6 5 4 32 32 H 1.08993 * 109.47839 * 59.99803 * 7 6 5 33 33 H 1.09000 * 109.47160 * 299.99365 * 7 6 5 34 34 H 1.09000 * 109.47050 * 299.99699 * 8 7 6 35 35 H 1.09001 * 109.46801 * 59.99811 * 8 7 6 36 36 H 0.96995 * 120.00407 * 179.97438 * 13 12 10 37 37 H 1.08995 * 109.27349 * 67.80727 * 18 5 4 38 38 H 1.09004 * 109.27161 * 187.28142 * 18 5 4 39 39 H 1.08000 * 119.81068 * 0.17260 * 20 19 18 40 40 H 1.08002 * 120.05883 * 179.97438 * 21 20 19 41 41 H 1.07999 * 120.08916 * 179.97438 * 22 21 20 42 42 H 1.07998 * 119.82351 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8919 1.0281 0.0000 4 6 2.0376 -0.7149 -1.2526 5 7 3.4912 -0.9055 -1.1247 6 6 4.0911 -1.2627 -2.4172 7 6 3.4154 -2.5226 -2.9622 8 6 4.0398 -2.8942 -4.3087 9 16 3.2411 -4.3851 -4.9532 10 6 4.1273 -4.5783 -6.4637 11 1 4.9007 -3.8731 -6.7301 12 6 3.8308 -5.6363 -7.3118 13 7 2.8871 -6.4950 -6.9880 14 14 4.7699 -5.8408 -8.9137 15 1 5.7709 -4.7516 -9.0431 16 1 5.4643 -7.1535 -8.9162 17 1 3.8215 -5.7803 -10.0548 18 6 3.7826 -1.9240 -0.1109 19 6 3.0801 -1.5984 1.1811 20 6 3.5118 -2.2219 2.3429 21 6 2.8946 -1.9560 3.5484 22 6 1.8398 -1.0637 3.6000 23 6 1.4097 -0.4416 2.4452 24 6 2.0304 -0.7067 1.2337 25 1 -0.3633 0.5170 0.8882 26 1 -0.3633 0.5108 -0.8918 27 1 -0.3633 -1.0276 0.0036 28 1 1.8238 -0.1082 -2.1325 29 1 1.5478 -1.6843 -1.3447 30 1 5.1564 -1.4504 -2.2838 31 1 3.9521 -0.4423 -3.1213 32 1 2.3501 -2.3349 -3.0956 33 1 3.5544 -3.3429 -2.2581 34 1 3.9005 -2.0737 -5.0127 35 1 5.1053 -3.0818 -4.1757 36 1 2.6796 -7.2341 -7.5808 37 1 3.4437 -2.8958 -0.4695 38 1 4.8579 -1.9605 0.0637 39 1 4.3354 -2.9194 2.3036 40 1 3.2346 -2.4446 4.4495 41 1 1.3541 -0.8534 4.5413 42 1 0.5860 0.2557 2.4856 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745982649.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:40 Heat of formation + Delta-G solvation = 7.488754 kcal Electronic energy + Delta-G solvation = -20355.112426 eV Core-core repulsion = 17425.034073 eV Total energy + Delta-G solvation = -2930.078353 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.43714 -37.75003 -34.90437 -32.96153 -32.43573 -30.90791 -29.87609 -26.94806 -26.38257 -25.53359 -23.25214 -23.19084 -21.64813 -21.11651 -19.07430 -17.48354 -16.90967 -16.17116 -15.78835 -14.96167 -14.81567 -14.67043 -14.52028 -14.30829 -14.01206 -13.67978 -13.50431 -12.96937 -12.86190 -12.62122 -12.21507 -12.02529 -11.94206 -11.81971 -11.52167 -11.43565 -11.37901 -11.08432 -10.82338 -10.71051 -10.62580 -10.49936 -10.32092 -9.72252 -9.07755 -8.91468 -8.66240 -8.37161 -8.12943 -6.54728 -6.23981 -3.94465 1.26745 1.28466 3.20095 3.21659 3.29279 3.56690 3.64453 3.88274 4.21281 4.51574 4.58720 4.74543 4.88137 4.99097 5.11587 5.13245 5.18009 5.25091 5.28770 5.33017 5.36071 5.39923 5.47861 5.53372 5.62964 5.66703 5.73167 5.81647 5.87301 5.90606 5.92057 5.98939 6.07925 6.14625 6.31798 6.37713 6.40173 6.47801 6.52682 6.69601 6.88886 7.01711 7.10023 7.59864 8.35936 9.22504 10.84288 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.030646 B = 0.002827 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.436190 B = 9903.818330 C =10136.487802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.048 4.048 3 H 0.087 0.913 4 C 0.052 3.948 5 N -0.530 5.530 6 C 0.057 3.943 7 C -0.136 4.136 8 C -0.108 4.108 9 S -0.138 6.138 10 C -0.514 4.514 11 H 0.073 0.927 12 C 0.070 3.930 13 N -0.870 5.870 14 Si 0.918 3.082 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.085 3.915 19 C -0.072 4.072 20 C -0.117 4.117 21 C -0.124 4.124 22 C -0.126 4.126 23 C -0.121 4.121 24 C -0.063 4.063 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.081 0.919 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.267 0.733 37 H 0.058 0.942 38 H 0.087 0.913 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.041 12.815 18.876 22.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.067 4.067 3 H 0.105 0.895 4 C -0.076 4.076 5 N -0.252 5.252 6 C -0.073 4.073 7 C -0.175 4.175 8 C -0.258 4.258 9 S 0.090 5.910 10 C -0.663 4.663 11 H 0.091 0.909 12 C -0.139 4.139 13 N -0.506 5.506 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.043 4.043 19 C -0.072 4.072 20 C -0.136 4.136 21 C -0.142 4.142 22 C -0.144 4.144 23 C -0.139 4.139 24 C -0.063 4.063 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.105 0.895 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.749 12.475 19.403 23.231 hybrid contribution 1.221 -0.327 -1.754 2.162 sum -1.528 12.148 17.649 21.480 Atomic orbital electron populations 1.21877 0.94140 1.02363 1.01977 1.20095 0.95246 0.99604 0.91743 0.89455 1.22245 0.87959 0.99858 0.97510 1.62577 1.11495 1.43919 1.07253 1.22320 0.98989 0.96766 0.89189 1.21960 1.00676 0.98135 0.96767 1.23177 1.02168 1.02524 0.97911 1.84638 1.51592 1.29374 1.25403 1.22723 1.23217 1.15293 1.05031 0.90896 1.25026 0.95371 0.94901 0.98561 1.70032 1.29351 1.14101 1.37080 0.86112 0.79431 0.78223 0.81754 1.19582 1.20569 1.20558 1.21042 1.00019 0.94168 0.89065 1.19648 0.95905 0.96763 0.94883 1.21048 1.00362 1.00045 0.92124 1.21023 0.96791 0.98805 0.97611 1.21056 0.97510 0.97704 0.98102 1.21126 1.00134 1.00440 0.92164 1.19575 0.95202 0.96646 0.94857 0.92239 0.92040 0.92356 0.90082 0.93519 0.90572 0.90325 0.91419 0.91600 0.92081 0.92130 0.92371 0.92425 0.89510 0.86081 0.86254 0.86355 0.86105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.73 37.16 0.32 -0.95 16 2 C -0.05 -0.50 3.00 -91.81 -0.28 -0.78 16 3 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 4 C 0.05 0.62 3.85 -3.74 -0.01 0.60 16 5 N -0.53 -6.65 4.90 -236.20 -1.16 -7.80 16 6 C 0.06 0.74 5.32 -3.82 -0.02 0.72 16 7 C -0.14 -2.17 4.52 -26.73 -0.12 -2.30 16 8 C -0.11 -2.17 5.67 37.16 0.21 -1.96 16 9 S -0.14 -3.63 21.44 -107.50 -2.30 -5.94 16 10 C -0.51 -14.81 9.50 30.94 0.29 -14.52 16 11 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 12 C 0.07 2.01 5.49 -17.43 -0.10 1.91 16 13 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 14 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 15 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 C 0.08 1.03 5.06 -5.16 -0.03 1.01 16 19 C -0.07 -0.86 5.79 -104.62 -0.61 -1.46 16 20 C -0.12 -1.26 9.65 -39.48 -0.38 -1.64 16 21 C -0.12 -1.20 10.05 -39.66 -0.40 -1.60 16 22 C -0.13 -1.18 10.05 -39.65 -0.40 -1.58 16 23 C -0.12 -1.21 9.09 -39.49 -0.36 -1.57 16 24 C -0.06 -0.71 5.45 -104.60 -0.57 -1.28 16 25 H 0.06 0.44 6.51 -51.93 -0.34 0.10 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.91 8.03 -51.93 -0.42 0.50 16 29 H 0.05 0.61 7.07 -51.92 -0.37 0.24 16 30 H 0.08 0.97 8.12 -51.93 -0.42 0.55 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.11 6.71 -51.93 -0.35 0.77 16 33 H 0.07 1.09 6.46 -51.93 -0.34 0.75 16 34 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 35 H 0.06 1.20 8.14 -51.91 -0.42 0.78 16 36 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.06 0.76 6.26 -51.93 -0.33 0.43 16 38 H 0.09 0.99 8.13 -51.93 -0.42 0.56 16 39 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 40 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.12 0.98 6.47 -52.49 -0.34 0.64 16 LS Contribution 344.56 15.07 5.19 5.19 Total: -1.00 -31.36 344.56 -11.66 -43.02 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -6.66 Total: -0.29 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: -2.44 Total: -25.38 kcal Atomic # 7 Polarization: -32.76 SS G_CDS: -0.42 Total: -33.18 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -2.30 Total: -5.94 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.36 -11.66 -43.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745982649.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.506 kcal (2) G-P(sol) polarization free energy of solvation -31.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds