Wall clock time and date at job start Tue Mar 31 2020 06:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.39254 * 2 1 4 4 C 1.52892 * 109.38958 * 240.28565 * 2 1 3 5 5 N 1.47158 * 108.49959 * 189.44196 * 4 2 1 6 6 C 1.46906 * 111.00221 * 194.70017 * 5 4 2 7 7 C 1.52999 * 109.46904 * 303.04487 * 6 5 4 8 8 C 1.53006 * 109.46626 * 179.97438 * 7 6 5 9 9 S 1.81003 * 109.46900 * 179.97438 * 8 7 6 10 10 C 1.76196 * 99.99843 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00031 * 359.97438 * 10 9 8 12 12 C 1.38802 * 119.99637 * 180.02562 * 10 9 8 13 13 N 1.31628 * 120.00514 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99567 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47216 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46911 * 120.00106 * 14 12 10 17 17 H 1.48506 * 109.47215 * 239.99864 * 14 12 10 18 18 C 1.46630 * 110.26390 * 71.27510 * 5 4 2 19 19 C 1.50623 * 110.50332 * 307.54256 * 18 5 4 20 20 C 1.38735 * 118.42567 * 197.34786 * 19 18 5 21 21 C 1.38017 * 120.37548 * 180.17531 * 20 19 18 22 22 C 1.38256 * 119.87508 * 0.02562 * 21 20 19 23 23 C 1.38040 * 119.82432 * 359.92026 * 22 21 20 24 24 C 1.37831 * 121.85059 * 17.40329 * 19 18 5 25 25 H 1.09004 * 109.46926 * 300.20001 * 1 2 3 26 26 H 1.09002 * 109.46871 * 60.19700 * 1 2 3 27 27 H 1.08997 * 109.46916 * 180.19829 * 1 2 3 28 28 H 1.08994 * 109.63511 * 69.73435 * 4 2 1 29 29 H 1.09007 * 109.62593 * 309.14142 * 4 2 1 30 30 H 1.08993 * 109.47034 * 183.03797 * 6 5 4 31 31 H 1.09000 * 109.46693 * 63.04138 * 6 5 4 32 32 H 1.08993 * 109.47839 * 59.99803 * 7 6 5 33 33 H 1.09000 * 109.47160 * 299.99365 * 7 6 5 34 34 H 1.09000 * 109.47050 * 299.99699 * 8 7 6 35 35 H 1.09001 * 109.46801 * 59.99811 * 8 7 6 36 36 H 0.96995 * 120.00407 * 179.97438 * 13 12 10 37 37 H 1.08995 * 109.27349 * 67.80727 * 18 5 4 38 38 H 1.09004 * 109.27161 * 187.28142 * 18 5 4 39 39 H 1.08000 * 119.81068 * 0.17260 * 20 19 18 40 40 H 1.08002 * 120.05883 * 179.97438 * 21 20 19 41 41 H 1.07999 * 120.08916 * 179.97438 * 22 21 20 42 42 H 1.07998 * 119.82351 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8919 1.0281 0.0000 4 6 2.0376 -0.7149 -1.2526 5 7 3.4912 -0.9055 -1.1247 6 6 4.0911 -1.2627 -2.4172 7 6 3.4154 -2.5226 -2.9622 8 6 4.0398 -2.8942 -4.3087 9 16 3.2411 -4.3851 -4.9532 10 6 4.1273 -4.5783 -6.4637 11 1 4.9007 -3.8731 -6.7301 12 6 3.8308 -5.6363 -7.3118 13 7 2.8871 -6.4950 -6.9880 14 14 4.7699 -5.8408 -8.9137 15 1 5.7709 -4.7516 -9.0431 16 1 5.4643 -7.1535 -8.9162 17 1 3.8215 -5.7803 -10.0548 18 6 3.7826 -1.9240 -0.1109 19 6 3.0801 -1.5984 1.1811 20 6 3.5118 -2.2219 2.3429 21 6 2.8946 -1.9560 3.5484 22 6 1.8398 -1.0637 3.6000 23 6 1.4097 -0.4416 2.4452 24 6 2.0304 -0.7067 1.2337 25 1 -0.3633 0.5170 0.8882 26 1 -0.3633 0.5108 -0.8918 27 1 -0.3633 -1.0276 0.0036 28 1 1.8238 -0.1082 -2.1325 29 1 1.5478 -1.6843 -1.3447 30 1 5.1564 -1.4504 -2.2838 31 1 3.9521 -0.4423 -3.1213 32 1 2.3501 -2.3349 -3.0956 33 1 3.5544 -3.3429 -2.2581 34 1 3.9005 -2.0737 -5.0127 35 1 5.1053 -3.0818 -4.1757 36 1 2.6796 -7.2341 -7.5808 37 1 3.4437 -2.8958 -0.4695 38 1 4.8579 -1.9605 0.0637 39 1 4.3354 -2.9194 2.3036 40 1 3.2346 -2.4446 4.4495 41 1 1.3541 -0.8534 4.5413 42 1 0.5860 0.2557 2.4856 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745982649.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:39 Heat of formation + Delta-G solvation = -9.538328 kcal Electronic energy + Delta-G solvation = -20355.850775 eV Core-core repulsion = 17425.034073 eV Total energy + Delta-G solvation = -2930.816703 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.28862 -38.69546 -35.80666 -34.63211 -34.05057 -31.93998 -30.64889 -28.01480 -27.73319 -27.26037 -24.45733 -24.03203 -22.57255 -22.12028 -20.05392 -19.53006 -17.73434 -17.11648 -16.91771 -16.78463 -16.13959 -15.98334 -15.71924 -15.19190 -15.10955 -14.97335 -14.41596 -14.28521 -13.90721 -13.63065 -13.36525 -13.31257 -13.20119 -12.95365 -12.77451 -12.67363 -12.54663 -12.50685 -12.38674 -12.17894 -11.61541 -11.59169 -11.41880 -11.33113 -11.17199 -10.37682 -9.73135 -9.47716 -9.21390 -8.69885 -8.39339 -6.16199 0.47830 0.51406 1.30375 1.37091 1.48405 1.73713 2.26511 2.83895 2.91224 2.94974 3.29374 3.68463 3.75977 3.91202 3.95053 4.08562 4.15209 4.26864 4.29621 4.32293 4.41488 4.46491 4.49830 4.56027 4.64632 4.66718 4.72891 4.77154 4.84970 4.89218 5.04626 5.06873 5.13269 5.17030 5.23039 5.26606 5.38061 5.38203 5.60813 5.64708 5.68938 6.01250 6.06032 6.16526 6.18754 7.02948 8.70325 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.030646 B = 0.002827 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.436190 B = 9903.818330 C =10136.487802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.044 4.044 3 H 0.091 0.909 4 C 0.051 3.949 5 N -0.528 5.528 6 C 0.067 3.933 7 C -0.121 4.121 8 C -0.083 4.083 9 S -0.207 6.207 10 C -0.535 4.535 11 H 0.073 0.927 12 C 0.014 3.986 13 N -0.908 5.908 14 Si 0.995 3.005 15 H -0.262 1.262 16 H -0.272 1.272 17 H -0.271 1.271 18 C 0.086 3.914 19 C -0.096 4.096 20 C -0.130 4.130 21 C -0.129 4.129 22 C -0.128 4.128 23 C -0.127 4.127 24 C -0.079 4.079 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.046 0.954 28 H 0.086 0.914 29 H 0.029 0.971 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.271 0.729 37 H 0.042 0.958 38 H 0.092 0.908 39 H 0.130 0.870 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.566 14.215 19.561 24.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.063 4.063 3 H 0.109 0.891 4 C -0.077 4.077 5 N -0.249 5.249 6 C -0.063 4.063 7 C -0.161 4.161 8 C -0.233 4.233 9 S 0.022 5.978 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.191 4.191 13 N -0.545 5.545 14 Si 0.817 3.183 15 H -0.186 1.186 16 H -0.197 1.197 17 H -0.196 1.196 18 C -0.041 4.041 19 C -0.096 4.096 20 C -0.148 4.148 21 C -0.147 4.147 22 C -0.145 4.145 23 C -0.144 4.144 24 C -0.080 4.080 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.047 0.953 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.110 0.890 39 H 0.148 0.852 40 H 0.159 0.841 41 H 0.162 0.838 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.280 13.883 20.105 24.539 hybrid contribution 1.051 -0.725 -1.844 2.243 sum -1.228 13.158 18.261 22.541 Atomic orbital electron populations 1.21852 0.92897 1.01958 1.03202 1.20077 0.96227 0.99304 0.90655 0.89090 1.22299 0.87387 0.99263 0.98765 1.62637 1.11968 1.43662 1.06661 1.22240 0.99098 0.95238 0.89718 1.21867 1.00367 0.99449 0.94433 1.23114 1.01775 0.98925 0.99437 1.84679 1.53393 1.33955 1.25789 1.23058 1.23529 1.15783 1.05943 0.90852 1.26097 0.96232 0.94288 1.02491 1.70164 1.30887 1.14752 1.38692 0.84951 0.78102 0.78564 0.76657 1.18559 1.19684 1.19639 1.21020 1.00457 0.93247 0.89386 1.19757 0.96831 0.98048 0.94983 1.21264 1.00926 1.00276 0.92338 1.21349 0.96663 0.98753 0.97969 1.21427 0.97175 0.96930 0.98998 1.21388 1.00472 1.00745 0.91841 1.19790 0.95414 0.96962 0.95805 0.90573 0.91274 0.93523 0.89534 0.95280 0.89763 0.89348 0.92003 0.92380 0.91618 0.91777 0.91978 0.94062 0.88952 0.85232 0.84093 0.83840 0.84247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.73 71.98 0.63 -1.66 16 2 C -0.04 -0.87 3.00 -11.57 -0.03 -0.91 16 3 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 4 C 0.05 1.18 3.85 86.22 0.33 1.51 16 5 N -0.53 -12.90 4.90 -901.20 -4.41 -17.31 16 6 C 0.07 1.69 5.32 86.30 0.46 2.15 16 7 C -0.12 -3.90 4.52 30.60 0.14 -3.76 16 8 C -0.08 -3.33 5.67 71.98 0.41 -2.92 16 9 S -0.21 -11.15 21.44 -56.49 -1.21 -12.36 16 10 C -0.54 -31.19 9.50 67.96 0.65 -30.54 16 11 H 0.07 4.11 7.80 -2.91 -0.02 4.09 16 12 C 0.01 0.78 5.49 84.86 0.47 1.25 16 13 N -0.91 -55.36 13.22 21.65 0.29 -55.07 16 14 Si 1.00 44.19 29.55 68.60 2.03 46.21 16 15 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 16 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 17 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 18 C 0.09 2.11 5.06 85.58 0.43 2.55 16 19 C -0.10 -2.26 5.79 -19.87 -0.12 -2.37 16 20 C -0.13 -2.68 9.65 22.34 0.22 -2.47 16 21 C -0.13 -2.27 10.05 22.22 0.22 -2.04 16 22 C -0.13 -2.11 10.05 22.23 0.22 -1.88 16 23 C -0.13 -2.30 9.09 22.33 0.20 -2.10 16 24 C -0.08 -1.73 5.45 -19.85 -0.11 -1.84 16 25 H 0.08 0.96 6.51 -2.38 -0.02 0.95 16 26 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.09 1.88 8.03 -2.39 -0.02 1.86 16 29 H 0.03 0.77 7.07 -2.38 -0.02 0.76 16 30 H 0.08 2.03 8.12 -2.39 -0.02 2.01 16 31 H 0.09 2.10 8.14 -2.39 -0.02 2.09 16 32 H 0.06 2.07 6.71 -2.39 -0.02 2.05 16 33 H 0.06 1.97 6.46 -2.39 -0.02 1.95 16 34 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 37 H 0.04 1.13 6.26 -2.39 -0.01 1.11 16 38 H 0.09 2.08 8.13 -2.38 -0.02 2.06 16 39 H 0.13 2.31 8.06 -2.91 -0.02 2.28 16 40 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 41 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 42 H 0.14 1.90 6.47 -2.91 -0.02 1.89 16 Total: -1.00 -68.01 344.56 1.79 -66.22 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.98 Total: 17.34 kcal Atomic # 6 Polarization: -49.15 SS G_CDS: 4.12 Total: -45.03 kcal Atomic # 7 Polarization: -68.26 SS G_CDS: -4.13 Total: -72.38 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: -11.15 SS G_CDS: -1.21 Total: -12.36 kcal Total: -68.01 1.79 -66.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745982649.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.678 kcal (2) G-P(sol) polarization free energy of solvation -68.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds