Wall clock time and date at job start Tue Mar 31 2020 06:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.38522 * 2 1 4 4 C 1.52890 * 109.38937 * 119.69934 * 2 1 3 5 5 N 1.47161 * 108.51057 * 170.52921 * 4 2 1 6 6 C 1.46903 * 111.00067 * 52.16312 * 5 4 2 7 7 C 1.52998 * 109.47296 * 170.96701 * 6 5 4 8 8 C 1.53005 * 109.46925 * 180.02562 * 7 6 5 9 9 S 1.81007 * 109.46593 * 179.97438 * 8 7 6 10 10 C 1.76204 * 99.99393 * 179.97438 * 9 8 7 11 11 H 1.07996 * 120.00468 * 0.02562 * 10 9 8 12 12 C 1.38800 * 119.99834 * 179.97438 * 10 9 8 13 13 N 1.31629 * 120.00263 * 179.97438 * 12 10 9 14 14 Si 1.86808 * 119.99862 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47334 * 89.99436 * 14 12 10 16 16 H 1.48501 * 109.46965 * 209.99579 * 14 12 10 17 17 H 1.48498 * 109.46944 * 329.99374 * 14 12 10 18 18 C 1.46627 * 110.24955 * 288.74562 * 5 4 2 19 19 C 1.50616 * 110.49344 * 52.55030 * 18 5 4 20 20 C 1.38735 * 118.42802 * 162.65343 * 19 18 5 21 21 C 1.38004 * 120.37859 * 179.60735 * 20 19 18 22 22 C 1.38254 * 119.87279 * 0.02562 * 21 20 19 23 23 C 1.38039 * 119.82666 * 0.07702 * 22 21 20 24 24 C 1.37836 * 121.84892 * 342.40890 * 19 18 5 25 25 H 1.09001 * 109.47002 * 179.79454 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.79892 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.79720 * 1 2 3 28 28 H 1.08998 * 109.62831 * 290.23845 * 4 2 1 29 29 H 1.09004 * 109.63107 * 50.82245 * 4 2 1 30 30 H 1.09003 * 109.46871 * 290.96920 * 6 5 4 31 31 H 1.09005 * 109.46832 * 50.96562 * 6 5 4 32 32 H 1.09001 * 109.46832 * 299.99996 * 7 6 5 33 33 H 1.08995 * 109.46953 * 59.99667 * 7 6 5 34 34 H 1.08998 * 109.46922 * 299.99371 * 8 7 6 35 35 H 1.08995 * 109.47005 * 60.00522 * 8 7 6 36 36 H 0.97003 * 120.00096 * 180.02562 * 13 12 10 37 37 H 1.09001 * 109.30165 * 292.23315 * 18 5 4 38 38 H 1.09001 * 109.30044 * 172.86476 * 18 5 4 39 39 H 1.08001 * 119.80374 * 359.58605 * 20 19 18 40 40 H 1.08004 * 120.06715 * 180.02562 * 21 20 19 41 41 H 1.08003 * 120.08842 * 180.02562 * 22 21 20 42 42 H 1.08000 * 119.82401 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8919 1.0282 0.0000 4 6 2.0376 -0.7145 1.2527 5 7 3.4911 -0.9059 1.1249 6 6 4.1629 0.3609 0.8056 7 6 5.6782 0.1731 0.9021 8 6 6.3778 1.4928 0.5702 9 16 8.1705 1.2707 0.6851 10 6 8.7074 2.8957 0.2656 11 1 7.9817 3.6623 0.0379 12 6 10.0632 3.1907 0.2288 13 7 10.4644 4.4044 -0.0851 14 14 11.3186 1.8648 0.6233 15 1 11.6934 1.1510 -0.6239 16 1 12.5274 2.4891 1.2186 17 1 10.7331 0.9003 1.5887 18 6 3.7816 -1.9247 0.1111 19 6 3.0809 -1.5973 -1.1813 20 6 3.5123 -2.2213 -2.3429 21 6 2.8938 -1.9572 -3.5480 22 6 1.8385 -1.0655 -3.5996 23 6 1.4093 -0.4422 -2.4451 24 6 2.0304 -0.7065 -1.2338 25 1 -0.3633 -1.0277 -0.0037 26 1 -0.3633 0.5107 0.8917 27 1 -0.3633 0.5170 -0.8882 28 1 1.8242 -0.1073 2.1324 29 1 1.5474 -1.6837 1.3455 30 1 3.8984 0.6674 -0.2064 31 1 3.8461 1.1282 1.5121 32 1 5.9426 -0.1334 1.9141 33 1 5.9949 -0.5942 0.1957 34 1 6.1135 1.7996 -0.4417 35 1 6.0611 2.2596 1.2770 36 1 11.4120 4.6105 -0.1112 37 1 3.4416 -2.8965 0.4691 38 1 4.8570 -1.9642 -0.0621 39 1 4.3371 -2.9174 -2.3038 40 1 3.2335 -2.4460 -4.4492 41 1 1.3517 -0.8565 -4.5407 42 1 0.5852 0.2547 -2.4855 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745982650.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:47 Heat of formation + Delta-G solvation = 10.215182 kcal Electronic energy + Delta-G solvation = -20729.909570 eV Core-core repulsion = 17799.949444 eV Total energy + Delta-G solvation = -2929.960126 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.80674 -37.59068 -34.78947 -33.01427 -32.41418 -31.00714 -29.91809 -26.98069 -26.61681 -25.59432 -23.54126 -22.98717 -21.79397 -21.19929 -19.04628 -17.46714 -16.80710 -16.15238 -15.78295 -15.46360 -15.00214 -14.91800 -14.47648 -14.40059 -13.80721 -13.65992 -13.58196 -12.90958 -12.83854 -12.55816 -12.32501 -12.06308 -11.96694 -11.81701 -11.67733 -11.51612 -11.48261 -11.24389 -11.03366 -11.01029 -10.60713 -10.31845 -10.10458 -9.74765 -8.98350 -8.89682 -8.69354 -8.53293 -8.37051 -6.91149 -6.26233 -3.98037 1.21773 1.24998 3.03072 3.31722 3.47483 3.57401 3.60773 3.92467 4.33829 4.41578 4.55330 4.64311 4.78796 4.83079 4.92163 4.98943 5.09998 5.12676 5.16622 5.21753 5.30008 5.36121 5.37218 5.55947 5.57067 5.60411 5.68563 5.76435 5.80030 5.84773 5.86989 5.91489 6.00280 6.02685 6.25642 6.32083 6.38848 6.47489 6.52974 6.67113 6.87761 6.96903 7.02823 7.97608 8.46610 9.19846 10.83355 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.021325 B = 0.003496 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.683876 B = 8007.185458 C = 8375.535989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.091 4.091 3 H 0.086 0.914 4 C 0.058 3.942 5 N -0.525 5.525 6 C 0.054 3.946 7 C -0.097 4.097 8 C -0.081 4.081 9 S -0.215 6.215 10 C -0.502 4.502 11 H 0.087 0.913 12 C 0.092 3.908 13 N -0.883 5.883 14 Si 0.861 3.139 15 H -0.269 1.269 16 H -0.276 1.276 17 H -0.237 1.237 18 C 0.084 3.916 19 C -0.107 4.107 20 C -0.113 4.113 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.118 4.118 24 C -0.073 4.073 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.270 0.730 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.767 -13.376 -2.142 24.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 H 0.104 0.896 4 C -0.070 4.070 5 N -0.245 5.245 6 C -0.076 4.076 7 C -0.135 4.135 8 C -0.230 4.230 9 S 0.013 5.987 10 C -0.649 4.649 11 H 0.105 0.895 12 C -0.116 4.116 13 N -0.520 5.520 14 Si 0.686 3.314 15 H -0.194 1.194 16 H -0.201 1.201 17 H -0.161 1.161 18 C -0.044 4.044 19 C -0.109 4.109 20 C -0.131 4.131 21 C -0.140 4.140 22 C -0.142 4.142 23 C -0.136 4.136 24 C -0.073 4.073 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.112 0.888 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -19.791 -14.325 -1.404 24.472 hybrid contribution -0.282 1.152 -1.289 1.752 sum -20.072 -13.174 -2.694 24.160 Atomic orbital electron populations 1.21806 0.93958 1.02065 1.01974 1.20727 0.96543 1.00094 0.93739 0.89640 1.22310 0.87788 1.00726 0.96211 1.62644 1.08433 1.08979 1.44411 1.22240 0.94682 0.90717 0.99913 1.21342 0.92467 0.96857 1.02877 1.23000 0.97601 0.99199 1.03172 1.84131 1.01468 1.21179 1.91953 1.22135 0.95873 0.93401 1.53516 0.89482 1.24794 0.97750 0.95535 0.93556 1.69941 1.16277 1.19191 1.46582 0.86672 0.81512 0.82677 0.80512 1.19409 1.20119 1.16106 1.21250 1.00705 0.95969 0.86481 1.20419 0.96437 0.97154 0.96847 1.21103 0.99902 0.99975 0.92160 1.21087 0.96484 0.98622 0.97784 1.21079 0.97506 0.97493 0.98090 1.21100 1.00165 1.00163 0.92187 1.19516 0.95644 0.97270 0.94882 0.92484 0.92134 0.92403 0.89968 0.90520 0.94055 0.90706 0.90681 0.91653 0.91748 0.91425 0.92009 0.89516 0.88773 0.85948 0.86163 0.86277 0.86182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.73 37.16 0.32 -0.75 16 2 C -0.09 -0.88 2.22 -91.82 -0.20 -1.09 16 3 H 0.09 0.90 7.04 -51.93 -0.37 0.54 16 4 C 0.06 0.57 5.32 -3.74 -0.02 0.55 16 5 N -0.52 -6.18 5.02 -236.20 -1.19 -7.36 16 6 C 0.05 0.72 3.95 -3.82 -0.02 0.70 16 7 C -0.10 -1.54 5.16 -26.73 -0.14 -1.67 16 8 C -0.08 -1.60 5.67 37.16 0.21 -1.39 16 9 S -0.22 -5.33 19.41 -107.50 -2.09 -7.42 16 10 C -0.50 -14.79 10.04 30.94 0.31 -14.48 16 11 H 0.09 2.73 8.03 -52.49 -0.42 2.31 16 12 C 0.09 2.72 5.50 -17.43 -0.10 2.62 16 13 N -0.88 -27.09 13.97 55.49 0.78 -26.32 16 14 Si 0.86 21.79 27.74 -169.99 -4.72 17.07 16 15 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 18 C 0.08 0.94 5.42 -5.17 -0.03 0.91 16 19 C -0.11 -1.24 5.20 -104.63 -0.54 -1.78 16 20 C -0.11 -1.25 9.65 -39.48 -0.38 -1.63 16 21 C -0.12 -1.26 10.05 -39.66 -0.40 -1.66 16 22 C -0.12 -1.26 10.05 -39.65 -0.40 -1.65 16 23 C -0.12 -1.24 9.09 -39.49 -0.36 -1.60 16 24 C -0.07 -0.81 4.73 -104.60 -0.49 -1.31 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.42 6.51 -51.93 -0.34 0.08 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.70 8.03 -51.93 -0.42 0.28 16 30 H 0.04 0.59 5.87 -51.93 -0.30 0.28 16 31 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.06 1.04 6.35 -51.93 -0.33 0.71 16 34 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 35 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 36 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.09 1.11 6.04 -51.93 -0.31 0.80 16 39 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 40 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 41 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 42 H 0.12 1.06 6.47 -52.49 -0.34 0.72 16 LS Contribution 339.79 15.07 5.12 5.12 Total: -1.00 -31.53 339.79 -10.96 -42.49 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -6.63 Total: 0.66 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: -2.23 Total: -24.24 kcal Atomic # 7 Polarization: -33.27 SS G_CDS: -0.41 Total: -33.68 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.72 Total: 17.07 kcal Atomic # 16 Polarization: -5.33 SS G_CDS: -2.09 Total: -7.42 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.53 -10.96 -42.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745982650.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.707 kcal (2) G-P(sol) polarization free energy of solvation -31.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds