Wall clock time and date at job start Tue Mar 31 2020 06:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.38522 * 2 1 4 4 C 1.52890 * 109.38937 * 119.69934 * 2 1 3 5 5 N 1.47161 * 108.51057 * 170.52921 * 4 2 1 6 6 C 1.46903 * 111.00067 * 52.16312 * 5 4 2 7 7 C 1.52998 * 109.47296 * 170.96701 * 6 5 4 8 8 C 1.53005 * 109.46925 * 180.02562 * 7 6 5 9 9 S 1.81007 * 109.46593 * 179.97438 * 8 7 6 10 10 C 1.76204 * 99.99393 * 179.97438 * 9 8 7 11 11 H 1.07996 * 120.00468 * 0.02562 * 10 9 8 12 12 C 1.38800 * 119.99834 * 179.97438 * 10 9 8 13 13 N 1.31629 * 120.00263 * 179.97438 * 12 10 9 14 14 Si 1.86808 * 119.99862 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47334 * 89.99436 * 14 12 10 16 16 H 1.48501 * 109.46965 * 209.99579 * 14 12 10 17 17 H 1.48498 * 109.46944 * 329.99374 * 14 12 10 18 18 C 1.46627 * 110.24955 * 288.74562 * 5 4 2 19 19 C 1.50616 * 110.49344 * 52.55030 * 18 5 4 20 20 C 1.38735 * 118.42802 * 162.65343 * 19 18 5 21 21 C 1.38004 * 120.37859 * 179.60735 * 20 19 18 22 22 C 1.38254 * 119.87279 * 0.02562 * 21 20 19 23 23 C 1.38039 * 119.82666 * 0.07702 * 22 21 20 24 24 C 1.37836 * 121.84892 * 342.40890 * 19 18 5 25 25 H 1.09001 * 109.47002 * 179.79454 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.79892 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.79720 * 1 2 3 28 28 H 1.08998 * 109.62831 * 290.23845 * 4 2 1 29 29 H 1.09004 * 109.63107 * 50.82245 * 4 2 1 30 30 H 1.09003 * 109.46871 * 290.96920 * 6 5 4 31 31 H 1.09005 * 109.46832 * 50.96562 * 6 5 4 32 32 H 1.09001 * 109.46832 * 299.99996 * 7 6 5 33 33 H 1.08995 * 109.46953 * 59.99667 * 7 6 5 34 34 H 1.08998 * 109.46922 * 299.99371 * 8 7 6 35 35 H 1.08995 * 109.47005 * 60.00522 * 8 7 6 36 36 H 0.97003 * 120.00096 * 180.02562 * 13 12 10 37 37 H 1.09001 * 109.30165 * 292.23315 * 18 5 4 38 38 H 1.09001 * 109.30044 * 172.86476 * 18 5 4 39 39 H 1.08001 * 119.80374 * 359.58605 * 20 19 18 40 40 H 1.08004 * 120.06715 * 180.02562 * 21 20 19 41 41 H 1.08003 * 120.08842 * 180.02562 * 22 21 20 42 42 H 1.08000 * 119.82401 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8919 1.0282 0.0000 4 6 2.0376 -0.7145 1.2527 5 7 3.4911 -0.9059 1.1249 6 6 4.1629 0.3609 0.8056 7 6 5.6782 0.1731 0.9021 8 6 6.3778 1.4928 0.5702 9 16 8.1705 1.2707 0.6851 10 6 8.7074 2.8957 0.2656 11 1 7.9817 3.6623 0.0379 12 6 10.0632 3.1907 0.2288 13 7 10.4644 4.4044 -0.0851 14 14 11.3186 1.8648 0.6233 15 1 11.6934 1.1510 -0.6239 16 1 12.5274 2.4891 1.2186 17 1 10.7331 0.9003 1.5887 18 6 3.7816 -1.9247 0.1111 19 6 3.0809 -1.5973 -1.1813 20 6 3.5123 -2.2213 -2.3429 21 6 2.8938 -1.9572 -3.5480 22 6 1.8385 -1.0655 -3.5996 23 6 1.4093 -0.4422 -2.4451 24 6 2.0304 -0.7065 -1.2338 25 1 -0.3633 -1.0277 -0.0037 26 1 -0.3633 0.5107 0.8917 27 1 -0.3633 0.5170 -0.8882 28 1 1.8242 -0.1073 2.1324 29 1 1.5474 -1.6837 1.3455 30 1 3.8984 0.6674 -0.2064 31 1 3.8461 1.1282 1.5121 32 1 5.9426 -0.1334 1.9141 33 1 5.9949 -0.5942 0.1957 34 1 6.1135 1.7996 -0.4417 35 1 6.0611 2.2596 1.2770 36 1 11.4120 4.6105 -0.1112 37 1 3.4416 -2.8965 0.4691 38 1 4.8570 -1.9642 -0.0621 39 1 4.3371 -2.9174 -2.3038 40 1 3.2335 -2.4460 -4.4492 41 1 1.3517 -0.8565 -4.5407 42 1 0.5852 0.2547 -2.4855 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745982650.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:42 Heat of formation + Delta-G solvation = -7.576190 kcal Electronic energy + Delta-G solvation = -20730.681062 eV Core-core repulsion = 17799.949444 eV Total energy + Delta-G solvation = -2930.731618 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -41.62707 -38.45889 -35.69934 -34.69510 -34.13752 -31.90108 -30.68361 -28.13273 -27.72767 -27.54361 -24.41512 -23.89921 -22.81621 -22.16124 -19.93528 -19.62895 -17.60830 -17.12882 -17.05164 -16.78565 -16.37270 -16.12060 -15.83777 -15.20886 -15.00439 -14.89012 -14.73262 -14.35716 -13.85336 -13.56066 -13.49647 -13.39239 -13.09772 -12.94170 -12.82615 -12.66837 -12.61786 -12.47185 -12.26905 -12.06853 -11.99788 -11.65369 -11.54165 -11.34780 -11.16734 -10.57639 -9.69387 -9.50066 -9.28163 -8.99743 -8.52657 -6.24052 0.41733 0.45192 1.11948 1.31718 1.47788 1.73432 2.24611 2.67509 2.80812 2.85453 2.96830 3.66737 3.79633 3.83840 3.96149 4.02197 4.11443 4.20939 4.25930 4.31049 4.41690 4.45139 4.49626 4.54677 4.63620 4.68022 4.72237 4.80756 4.84376 4.92547 5.02242 5.09753 5.12633 5.14333 5.19780 5.27492 5.32876 5.52671 5.60861 5.66995 5.68848 6.05372 6.08818 6.08953 6.10815 6.91351 8.60658 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.021325 B = 0.003496 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.683876 B = 8007.185458 C = 8375.535989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.088 4.088 3 H 0.075 0.925 4 C 0.059 3.941 5 N -0.528 5.528 6 C 0.066 3.934 7 C -0.084 4.084 8 C -0.068 4.068 9 S -0.216 6.216 10 C -0.525 4.525 11 H 0.048 0.952 12 C 0.039 3.961 13 N -0.923 5.923 14 Si 0.926 3.074 15 H -0.261 1.261 16 H -0.262 1.262 17 H -0.228 1.228 18 C 0.086 3.914 19 C -0.123 4.123 20 C -0.128 4.128 21 C -0.132 4.132 22 C -0.131 4.131 23 C -0.128 4.128 24 C -0.087 4.087 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.032 0.968 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.277 0.723 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.131 0.869 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.664 -15.117 -1.784 26.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.108 4.108 3 H 0.093 0.907 4 C -0.069 4.069 5 N -0.249 5.249 6 C -0.063 4.063 7 C -0.123 4.123 8 C -0.217 4.217 9 S 0.012 5.988 10 C -0.672 4.672 11 H 0.067 0.933 12 C -0.166 4.166 13 N -0.561 5.561 14 Si 0.747 3.253 15 H -0.186 1.186 16 H -0.186 1.186 17 H -0.151 1.151 18 C -0.042 4.042 19 C -0.124 4.124 20 C -0.146 4.146 21 C -0.150 4.150 22 C -0.149 4.149 23 C -0.146 4.146 24 C -0.087 4.087 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.050 0.950 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.118 0.882 38 H 0.103 0.897 39 H 0.149 0.851 40 H 0.155 0.845 41 H 0.157 0.843 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -20.705 -16.066 -1.046 26.228 hybrid contribution -0.129 1.733 -1.455 2.267 sum -20.834 -14.333 -2.501 25.411 Atomic orbital electron populations 1.21768 0.92337 1.02408 1.02758 1.20703 0.97874 0.99129 0.93096 0.90735 1.22389 0.86377 1.01510 0.96637 1.62625 1.09740 1.08019 1.44475 1.22009 0.92809 0.91878 0.99624 1.21225 0.93946 0.94319 1.02781 1.23048 0.94177 1.01598 1.02857 1.83803 1.05508 1.17723 1.91760 1.22354 0.95770 0.95262 1.53819 0.93348 1.25786 0.99798 0.97908 0.93109 1.70040 1.17257 1.21329 1.47486 0.85711 0.79000 0.79825 0.80798 1.18593 1.18609 1.15133 1.21244 1.00180 0.96346 0.86478 1.20545 0.96941 0.97832 0.97113 1.21339 1.00434 1.00393 0.92448 1.21380 0.96536 0.98761 0.98278 1.21403 0.97440 0.97121 0.98930 1.21362 1.00607 1.00462 0.92176 1.19771 0.95764 0.97400 0.95769 0.92308 0.90978 0.92032 0.88995 0.89575 0.94954 0.90138 0.90560 0.91514 0.92444 0.91513 0.91370 0.88247 0.89686 0.85068 0.84472 0.84323 0.84788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.73 71.98 0.63 -1.16 16 2 C -0.09 -1.57 2.22 -11.57 -0.03 -1.60 16 3 H 0.07 1.49 7.04 -2.39 -0.02 1.48 16 4 C 0.06 1.03 5.32 86.22 0.46 1.49 16 5 N -0.53 -11.56 5.02 -901.20 -4.53 -16.09 16 6 C 0.07 1.69 3.95 86.30 0.34 2.03 16 7 C -0.08 -2.57 5.16 30.60 0.16 -2.41 16 8 C -0.07 -2.68 5.67 71.98 0.41 -2.27 16 9 S -0.22 -10.62 19.41 -56.49 -1.10 -11.71 16 10 C -0.52 -31.60 10.04 67.95 0.68 -30.92 16 11 H 0.05 3.18 8.03 -2.91 -0.02 3.15 16 12 C 0.04 2.30 5.50 84.86 0.47 2.77 16 13 N -0.92 -57.58 13.97 21.65 0.30 -57.28 16 14 Si 0.93 44.62 27.74 68.60 1.90 46.53 16 15 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 16 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 17 H -0.23 -10.58 6.74 99.48 0.67 -9.91 16 18 C 0.09 1.81 5.42 85.58 0.46 2.27 16 19 C -0.12 -2.72 5.20 -19.87 -0.10 -2.82 16 20 C -0.13 -2.71 9.65 22.33 0.22 -2.49 16 21 C -0.13 -2.57 10.05 22.22 0.22 -2.35 16 22 C -0.13 -2.47 10.05 22.23 0.22 -2.25 16 23 C -0.13 -2.52 9.09 22.33 0.20 -2.32 16 24 C -0.09 -1.83 4.73 -19.85 -0.09 -1.93 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 0.77 6.51 -2.39 -0.02 0.75 16 28 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.09 1.37 8.03 -2.39 -0.02 1.35 16 30 H 0.03 0.89 5.87 -2.39 -0.01 0.88 16 31 H 0.08 1.96 8.09 -2.38 -0.02 1.94 16 32 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.07 2.05 6.35 -2.39 -0.02 2.03 16 34 H 0.06 2.34 8.14 -2.40 -0.02 2.32 16 35 H 0.07 2.65 8.14 -2.40 -0.02 2.63 16 36 H 0.28 15.88 8.31 -92.71 -0.77 15.11 16 37 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.08 1.93 6.04 -2.39 -0.01 1.91 16 39 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 40 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 41 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 42 H 0.13 2.14 6.47 -2.91 -0.02 2.12 16 Total: -1.00 -67.78 339.79 1.78 -66.00 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.95 Total: 16.50 kcal Atomic # 6 Polarization: -48.19 SS G_CDS: 4.25 Total: -43.94 kcal Atomic # 7 Polarization: -69.15 SS G_CDS: -4.22 Total: -73.37 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.90 Total: 46.53 kcal Atomic # 16 Polarization: -10.62 SS G_CDS: -1.10 Total: -11.71 kcal Total: -67.78 1.78 -66.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745982650.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.419 kcal (2) G-P(sol) polarization free energy of solvation -67.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds