Wall clock time and date at job start Tue Mar 31 2020 06:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47370 * 2 1 4 4 C 1.50703 * 109.47087 * 119.99826 * 2 1 3 5 5 N 1.28012 * 120.00209 * 240.00107 * 4 2 1 6 6 N 1.40105 * 120.00170 * 179.97438 * 5 4 2 7 7 C 1.38504 * 119.99846 * 180.02562 * 6 5 4 8 8 C 1.39644 * 120.04613 * 180.02562 * 7 6 5 9 9 C 1.38285 * 118.02593 * 179.97438 * 8 7 6 10 10 C 1.40076 * 117.99692 * 359.97438 * 9 8 7 11 11 C 1.47848 * 120.09070 * 179.97438 * 10 9 8 12 12 N 1.34782 * 120.00030 * 180.02562 * 11 10 9 13 13 O 1.21554 * 120.00495 * 359.97438 * 11 10 9 14 14 N 1.32785 * 119.81539 * 359.97438 * 10 9 8 15 15 N 1.28357 * 122.10510 * 0.02562 * 14 10 9 16 16 C 1.52996 * 109.47348 * 239.99921 * 2 1 3 17 17 C 1.50703 * 109.47104 * 59.99915 * 16 2 1 18 18 H 1.07995 * 120.00239 * 0.02562 * 17 16 2 19 19 C 1.37879 * 119.99696 * 180.02562 * 17 16 2 20 20 N 1.31513 * 120.00241 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99582 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47190 * 89.99907 * 21 19 17 23 23 H 1.48506 * 109.47137 * 209.99978 * 21 19 17 24 24 H 1.48499 * 109.47288 * 329.99660 * 21 19 17 25 25 H 1.09002 * 109.47496 * 300.00277 * 1 2 3 26 26 H 1.09005 * 109.46847 * 59.99805 * 1 2 3 27 27 H 1.08996 * 109.47575 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47460 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47042 * 299.99915 * 3 2 1 30 30 H 1.09002 * 109.47037 * 59.99442 * 3 2 1 31 31 H 1.08002 * 119.99426 * 60.00129 * 4 2 1 32 32 H 0.96995 * 119.99496 * 0.02562 * 6 5 4 33 33 H 1.07999 * 120.98387 * 0.26835 * 8 7 6 34 34 H 1.08003 * 120.99812 * 180.02562 * 9 8 7 35 35 H 0.97001 * 119.99482 * 359.97438 * 12 11 10 36 36 H 0.96993 * 119.99959 * 180.02562 * 12 11 10 37 37 H 1.08995 * 109.47570 * 180.02562 * 16 2 1 38 38 H 1.09003 * 109.47285 * 300.00016 * 16 2 1 39 39 H 0.96999 * 119.99560 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 2.7682 -0.0883 2.0732 6 7 3.2348 -0.7486 3.2174 7 6 4.0306 -0.0752 4.1294 8 6 4.4966 -0.7325 5.2699 9 6 5.2886 -0.0206 6.1521 10 6 5.5750 1.3161 5.8470 11 6 6.4167 2.1205 6.7583 12 7 6.6908 3.4068 6.4632 13 8 6.8609 1.6222 7.7741 14 7 5.0885 1.8589 4.7371 15 7 4.3536 1.1966 3.9193 16 6 2.0400 -0.7212 -1.2492 17 6 1.5377 -0.0109 -2.4797 18 1 0.9171 0.8674 -2.3807 19 6 1.8704 -0.4823 -3.7319 20 7 2.6265 -1.5515 -3.8525 21 14 1.2483 0.3987 -5.2572 22 1 2.2272 1.4396 -5.6614 23 1 1.0825 -0.5804 -6.3614 24 1 -0.0594 1.0371 -4.9613 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.7713 -1.7444 1.4014 32 1 3.0004 -1.6772 3.3709 33 1 4.2499 -1.7675 5.4550 34 1 5.6752 -0.4817 7.0490 35 1 6.3360 3.8045 5.6527 36 1 7.2433 3.9343 7.0608 37 1 3.1300 -0.7217 -1.2490 38 1 1.6767 -1.7489 -1.2492 39 1 2.8602 -1.8833 -4.7336 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755764990.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:22 Heat of formation + Delta-G solvation = 52.670169 kcal Electronic energy + Delta-G solvation = -21918.184369 eV Core-core repulsion = 18476.064766 eV Total energy + Delta-G solvation = -3442.119603 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 4.59 seconds Orbital eigenvalues (eV) -41.25063 -39.31158 -38.05069 -36.18755 -34.12386 -33.38517 -33.01434 -32.09430 -29.59440 -27.09736 -26.42544 -25.43835 -24.75543 -23.59988 -21.70598 -21.60690 -18.74633 -18.45624 -18.03925 -17.38867 -16.73713 -16.32217 -16.10663 -15.71250 -15.00180 -14.72066 -14.57896 -14.28776 -13.75354 -13.53890 -13.43659 -12.92839 -12.67347 -12.10263 -11.98915 -11.44345 -11.02475 -10.98637 -10.85211 -10.64967 -10.61508 -10.47848 -10.45411 -10.27690 -10.13481 -9.96883 -9.83674 -9.63917 -9.32790 -9.02406 -8.39870 -8.08066 -6.04541 -4.05639 0.40528 0.64322 2.29201 2.35552 2.68562 3.13592 3.30518 3.37448 3.39502 3.59101 3.83669 4.20159 4.42649 4.43554 4.51417 4.79882 5.01969 5.11246 5.32328 5.46844 5.61054 5.70944 5.83602 5.90674 6.15551 6.31016 6.47299 6.49928 6.62874 6.73840 6.77950 7.01188 7.04384 7.05439 7.20901 7.55313 7.66473 7.92253 7.93657 8.17566 8.34516 8.62456 8.98548 9.57906 11.07059 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.029309 B = 0.002683 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.112860 B =10434.702333 C =10761.278574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.012 4.012 3 C -0.118 4.118 4 C 0.110 3.890 5 N -0.243 5.243 6 N -0.562 5.562 7 C 0.383 3.617 8 C -0.188 4.188 9 C -0.023 4.023 10 C -0.052 4.052 11 C 0.593 3.407 12 N -0.836 5.836 13 O -0.545 6.545 14 N -0.165 5.165 15 N -0.260 5.260 16 C 0.039 3.961 17 C -0.510 4.510 18 H 0.063 0.937 19 C 0.057 3.943 20 N -0.896 5.896 21 Si 0.890 3.110 22 H -0.281 1.281 23 H -0.288 1.288 24 H -0.273 1.273 25 H 0.035 0.965 26 H 0.076 0.924 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.039 0.961 31 H 0.101 0.899 32 H 0.393 0.607 33 H 0.154 0.846 34 H 0.161 0.839 35 H 0.413 0.587 36 H 0.405 0.595 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.482 2.552 18.609 18.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.015 4.015 3 C -0.175 4.175 4 C -0.105 4.105 5 N -0.044 5.044 6 N -0.282 5.282 7 C 0.142 3.858 8 C -0.222 4.222 9 C -0.052 4.052 10 C -0.202 4.202 11 C 0.376 3.624 12 N -0.399 5.399 13 O -0.421 6.421 14 N -0.015 5.015 15 N -0.114 5.114 16 C 0.001 3.999 17 C -0.548 4.548 18 H 0.081 0.919 19 C -0.144 4.144 20 N -0.536 5.536 21 Si 0.718 3.282 22 H -0.207 1.207 23 H -0.214 1.214 24 H -0.198 1.198 25 H 0.054 0.946 26 H 0.095 0.905 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.119 0.881 32 H 0.233 0.767 33 H 0.171 0.829 34 H 0.178 0.822 35 H 0.244 0.756 36 H 0.237 0.763 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.069 4.132 18.332 19.040 hybrid contribution -0.487 -1.947 -0.188 2.016 sum 2.582 2.184 18.143 18.456 Atomic orbital electron populations 1.21725 0.93745 1.01380 1.01326 1.19828 0.95277 0.96110 0.90318 1.21604 1.01080 0.94388 1.00469 1.26757 0.91768 0.97647 0.94303 1.74717 1.12215 1.23194 0.94287 1.45488 1.50662 1.12062 1.19976 1.19743 0.87778 0.91440 0.86809 1.21707 1.03002 1.02552 0.94920 1.22041 0.91902 0.92578 0.98661 1.22352 1.05113 0.94921 0.97830 1.17446 0.78960 0.81952 0.84035 1.43633 1.54901 1.12393 1.29000 1.90827 1.53152 1.71638 1.26436 1.73116 1.01156 1.28514 0.98683 1.73482 1.12077 1.04306 1.21515 1.19144 0.96540 0.95131 0.89077 1.21157 1.31330 1.12144 0.90215 0.91919 1.24999 0.95237 0.95043 0.99136 1.69958 1.36986 1.23081 1.23533 0.86616 0.79285 0.79414 0.82836 1.20683 1.21377 1.19802 0.94577 0.90486 0.93189 0.92897 0.91751 0.94228 0.88145 0.76659 0.82853 0.82157 0.75614 0.76346 0.96253 0.96293 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.07 8.20 37.16 0.30 -1.77 16 2 C -0.01 -0.23 0.75 -155.66 -0.12 -0.35 16 3 C -0.12 -2.24 7.45 37.16 0.28 -1.96 16 4 C 0.11 1.78 9.56 -13.87 -0.13 1.65 16 5 N -0.24 -4.00 9.74 32.67 0.32 -3.69 16 6 N -0.56 -7.41 6.40 31.22 0.20 -7.21 16 7 C 0.38 5.10 7.68 -154.89 -1.19 3.91 16 8 C -0.19 -1.82 10.04 -39.04 -0.39 -2.21 16 9 C -0.02 -0.23 9.71 -38.88 -0.38 -0.61 16 10 C -0.05 -0.63 6.83 -82.83 -0.57 -1.19 16 11 C 0.59 6.75 8.08 -12.33 -0.10 6.65 16 12 N -0.84 -6.70 8.86 30.53 0.27 -6.43 16 13 O -0.54 -7.50 17.22 5.32 0.09 -7.41 16 14 N -0.17 -2.29 10.73 33.32 0.36 -1.93 16 15 N -0.26 -4.08 11.08 31.23 0.35 -3.73 16 16 C 0.04 0.92 4.02 -27.88 -0.11 0.81 16 17 C -0.51 -13.13 7.65 -34.44 -0.26 -13.39 16 18 H 0.06 1.55 5.68 -52.49 -0.30 1.25 16 19 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 20 N -0.90 -25.73 13.29 55.43 0.74 -25.00 16 21 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 1.39 6.62 -51.93 -0.34 1.04 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 1.07 8.06 -51.93 -0.42 0.65 16 29 H 0.06 1.26 6.62 -51.93 -0.34 0.92 16 30 H 0.04 0.70 8.06 -51.93 -0.42 0.28 16 31 H 0.10 1.37 8.00 -52.49 -0.42 0.95 16 32 H 0.39 3.78 8.63 -182.60 -1.58 2.21 16 33 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.16 1.29 7.71 -52.48 -0.40 0.89 16 35 H 0.41 2.98 8.17 -40.82 -0.33 2.64 16 36 H 0.41 2.36 8.93 -40.82 -0.36 1.99 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 339.03 15.07 5.11 5.11 Total: -1.00 -32.62 339.03 -6.53 -39.15 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.17 Total: 2.42 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -2.76 Total: -7.03 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 2.23 Total: -47.98 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: 0.09 Total: -7.41 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.62 -6.53 -39.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755764990.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.818 kcal (2) G-P(sol) polarization free energy of solvation -32.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.59 seconds