Wall clock time and date at job start Tue Mar 31 2020 06:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47370 * 2 1 4 4 C 1.50703 * 109.47087 * 119.99826 * 2 1 3 5 5 N 1.28012 * 120.00209 * 240.00107 * 4 2 1 6 6 N 1.40105 * 120.00170 * 179.97438 * 5 4 2 7 7 C 1.38504 * 119.99846 * 180.02562 * 6 5 4 8 8 C 1.39644 * 120.04613 * 180.02562 * 7 6 5 9 9 C 1.38285 * 118.02593 * 179.97438 * 8 7 6 10 10 C 1.40076 * 117.99692 * 359.97438 * 9 8 7 11 11 C 1.47848 * 120.09070 * 179.97438 * 10 9 8 12 12 N 1.34782 * 120.00030 * 180.02562 * 11 10 9 13 13 O 1.21554 * 120.00495 * 359.97438 * 11 10 9 14 14 N 1.32785 * 119.81539 * 359.97438 * 10 9 8 15 15 N 1.28357 * 122.10510 * 0.02562 * 14 10 9 16 16 C 1.52996 * 109.47348 * 239.99921 * 2 1 3 17 17 C 1.50703 * 109.47104 * 59.99915 * 16 2 1 18 18 H 1.07995 * 120.00239 * 0.02562 * 17 16 2 19 19 C 1.37879 * 119.99696 * 180.02562 * 17 16 2 20 20 N 1.31513 * 120.00241 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99582 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47190 * 89.99907 * 21 19 17 23 23 H 1.48506 * 109.47137 * 209.99978 * 21 19 17 24 24 H 1.48499 * 109.47288 * 329.99660 * 21 19 17 25 25 H 1.09002 * 109.47496 * 300.00277 * 1 2 3 26 26 H 1.09005 * 109.46847 * 59.99805 * 1 2 3 27 27 H 1.08996 * 109.47575 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47460 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47042 * 299.99915 * 3 2 1 30 30 H 1.09002 * 109.47037 * 59.99442 * 3 2 1 31 31 H 1.08002 * 119.99426 * 60.00129 * 4 2 1 32 32 H 0.96995 * 119.99496 * 0.02562 * 6 5 4 33 33 H 1.07999 * 120.98387 * 0.26835 * 8 7 6 34 34 H 1.08003 * 120.99812 * 180.02562 * 9 8 7 35 35 H 0.97001 * 119.99482 * 359.97438 * 12 11 10 36 36 H 0.96993 * 119.99959 * 180.02562 * 12 11 10 37 37 H 1.08995 * 109.47570 * 180.02562 * 16 2 1 38 38 H 1.09003 * 109.47285 * 300.00016 * 16 2 1 39 39 H 0.96999 * 119.99560 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 2.7682 -0.0883 2.0732 6 7 3.2348 -0.7486 3.2174 7 6 4.0306 -0.0752 4.1294 8 6 4.4966 -0.7325 5.2699 9 6 5.2886 -0.0206 6.1521 10 6 5.5750 1.3161 5.8470 11 6 6.4167 2.1205 6.7583 12 7 6.6908 3.4068 6.4632 13 8 6.8609 1.6222 7.7741 14 7 5.0885 1.8589 4.7371 15 7 4.3536 1.1966 3.9193 16 6 2.0400 -0.7212 -1.2492 17 6 1.5377 -0.0109 -2.4797 18 1 0.9171 0.8674 -2.3807 19 6 1.8704 -0.4823 -3.7319 20 7 2.6265 -1.5515 -3.8525 21 14 1.2483 0.3987 -5.2572 22 1 2.2272 1.4396 -5.6614 23 1 1.0825 -0.5804 -6.3614 24 1 -0.0594 1.0371 -4.9613 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.7713 -1.7444 1.4014 32 1 3.0004 -1.6772 3.3709 33 1 4.2499 -1.7675 5.4550 34 1 5.6752 -0.4817 7.0490 35 1 6.3360 3.8045 5.6527 36 1 7.2433 3.9343 7.0608 37 1 3.1300 -0.7217 -1.2490 38 1 1.6767 -1.7489 -1.2492 39 1 2.8602 -1.8833 -4.7336 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755764990.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:17 Heat of formation + Delta-G solvation = 28.725542 kcal Electronic energy + Delta-G solvation = -21919.222686 eV Core-core repulsion = 18476.064766 eV Total energy + Delta-G solvation = -3443.157920 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 3.48 seconds Orbital eigenvalues (eV) -42.18423 -40.23749 -39.35532 -37.48294 -35.10852 -34.59418 -34.17445 -33.57397 -30.68984 -28.93850 -27.89618 -26.37254 -26.05062 -25.04548 -23.06846 -22.51948 -19.98400 -19.33929 -18.99143 -18.53826 -18.28817 -17.68299 -17.13073 -16.67653 -16.51847 -15.83115 -15.58873 -15.50605 -14.97657 -14.88543 -14.52179 -14.35543 -13.99776 -13.88827 -13.03431 -12.96326 -12.75394 -12.65861 -12.54777 -12.27430 -12.04490 -11.84369 -11.55083 -11.40746 -11.34949 -11.16806 -10.97431 -10.87186 -10.75111 -10.62683 -10.47215 -9.15330 -8.11329 -6.17518 -0.51944 -0.21003 1.15787 1.35866 1.45811 1.47303 1.56634 1.69160 2.31662 2.48050 2.65774 2.92302 3.24222 3.30840 3.62162 3.78774 3.87384 3.99148 4.04793 4.38629 4.43098 4.45079 4.70342 4.83315 4.95569 5.01480 5.09928 5.19605 5.26314 5.46363 5.54631 5.57298 5.59223 5.77522 5.81784 5.84728 5.92954 6.26543 6.34051 6.96294 7.07839 7.16605 7.49827 7.66047 9.00887 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.029309 B = 0.002683 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.112860 B =10434.702333 C =10761.278574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.008 4.008 3 C -0.108 4.108 4 C 0.102 3.898 5 N -0.262 5.262 6 N -0.556 5.556 7 C 0.363 3.637 8 C -0.161 4.161 9 C -0.025 4.025 10 C -0.053 4.053 11 C 0.592 3.408 12 N -0.818 5.818 13 O -0.570 6.570 14 N -0.185 5.185 15 N -0.306 5.306 16 C 0.047 3.953 17 C -0.513 4.513 18 H 0.071 0.929 19 C 0.000 4.000 20 N -0.937 5.937 21 Si 0.953 3.047 22 H -0.280 1.280 23 H -0.288 1.288 24 H -0.259 1.259 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.030 0.970 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.128 0.872 32 H 0.412 0.588 33 H 0.198 0.802 34 H 0.185 0.815 35 H 0.419 0.581 36 H 0.417 0.583 37 H -0.017 1.017 38 H 0.004 0.996 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.795 2.443 20.246 20.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.011 4.011 3 C -0.165 4.165 4 C -0.112 4.112 5 N -0.064 5.064 6 N -0.280 5.280 7 C 0.122 3.878 8 C -0.195 4.195 9 C -0.053 4.053 10 C -0.205 4.205 11 C 0.374 3.626 12 N -0.382 5.382 13 O -0.449 6.449 14 N -0.032 5.032 15 N -0.159 5.159 16 C 0.009 3.991 17 C -0.551 4.551 18 H 0.089 0.911 19 C -0.197 4.197 20 N -0.578 5.578 21 Si 0.779 3.221 22 H -0.206 1.206 23 H -0.214 1.214 24 H -0.183 1.183 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.145 0.855 32 H 0.256 0.744 33 H 0.215 0.785 34 H 0.203 0.797 35 H 0.250 0.750 36 H 0.251 0.749 37 H 0.001 0.999 38 H 0.022 0.978 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.376 4.077 19.970 20.520 hybrid contribution -0.159 -1.870 -0.535 1.952 sum 2.217 2.207 19.435 19.685 Atomic orbital electron populations 1.21649 0.92036 1.02170 1.01723 1.19569 0.96646 0.95241 0.89623 1.21477 0.99576 0.94946 1.00503 1.26412 0.92557 0.98607 0.93666 1.74510 1.11478 1.25116 0.95310 1.45236 1.50879 1.12857 1.19021 1.20048 0.88397 0.91340 0.87967 1.22103 1.00720 1.04079 0.92574 1.22381 0.91632 0.91832 0.99479 1.22665 1.04453 0.96065 0.97278 1.17451 0.78857 0.82666 0.83624 1.43544 1.54013 1.11491 1.29134 1.90816 1.54355 1.72319 1.27394 1.73045 1.01915 1.28900 0.99361 1.73327 1.13559 1.06047 1.22996 1.18957 0.94133 0.94794 0.91221 1.21585 1.30423 1.12032 0.91053 0.91085 1.25843 0.95675 0.95820 1.02406 1.70091 1.38775 1.24876 1.24048 0.85618 0.79207 0.78160 0.79120 1.20650 1.21428 1.18290 0.92176 0.91987 0.92243 0.95038 0.92839 0.92834 0.85544 0.74411 0.78516 0.79741 0.74976 0.74933 0.99880 0.97765 0.93190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.78 8.20 71.98 0.59 -3.19 16 2 C -0.01 -0.30 0.75 -52.93 -0.04 -0.34 16 3 C -0.11 -4.11 7.45 71.98 0.54 -3.57 16 4 C 0.10 3.22 9.56 88.67 0.85 4.07 16 5 N -0.26 -8.43 9.74 -50.46 -0.49 -8.92 16 6 N -0.56 -13.66 6.40 -55.15 -0.35 -14.01 16 7 C 0.36 9.06 7.68 133.21 1.02 10.08 16 8 C -0.16 -2.61 10.04 22.62 0.23 -2.39 16 9 C -0.02 -0.44 9.71 22.73 0.22 -0.22 16 10 C -0.05 -1.21 6.83 41.99 0.29 -0.92 16 11 C 0.59 12.70 8.08 86.79 0.70 13.40 16 12 N -0.82 -12.15 8.86 -175.59 -1.56 -13.71 16 13 O -0.57 -14.90 17.22 -3.89 -0.07 -14.97 16 14 N -0.18 -5.02 10.73 -48.49 -0.52 -5.54 16 15 N -0.31 -9.49 11.08 -55.12 -0.61 -10.11 16 16 C 0.05 2.27 4.02 29.85 0.12 2.39 16 17 C -0.51 -26.70 7.65 25.60 0.20 -26.50 16 18 H 0.07 3.51 5.68 -2.91 -0.02 3.49 16 19 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 20 N -0.94 -55.07 13.29 21.45 0.28 -54.78 16 21 Si 0.95 42.82 29.54 68.60 2.03 44.85 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 24 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 25 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.06 2.16 6.62 -2.38 -0.02 2.15 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.03 1.30 8.06 -2.39 -0.02 1.28 16 29 H 0.05 2.10 6.62 -2.39 -0.02 2.09 16 30 H 0.05 1.86 8.06 -2.39 -0.02 1.85 16 31 H 0.13 3.21 8.00 -2.91 -0.02 3.18 16 32 H 0.41 6.84 8.63 -213.32 -1.84 5.00 16 33 H 0.20 1.37 8.06 -2.91 -0.02 1.34 16 34 H 0.19 2.35 7.71 -2.91 -0.02 2.33 16 35 H 0.42 5.66 8.17 -92.71 -0.76 4.90 16 36 H 0.42 4.27 8.93 -92.71 -0.83 3.44 16 37 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 38 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -72.31 339.03 1.57 -70.74 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -2.31 Total: 13.20 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: 5.17 Total: -6.75 kcal Atomic # 7 Polarization: -103.82 SS G_CDS: -3.25 Total: -107.06 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.07 Total: -14.97 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -72.31 1.57 -70.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755764990.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.461 kcal (2) G-P(sol) polarization free energy of solvation -72.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.48 seconds