Wall clock time and date at job start Tue Mar 31 2020 08:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86792 * 120.00247 * 2 1 4 4 H 1.48500 * 109.47121 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47398 * 300.00090 * 3 2 1 6 6 H 1.48505 * 109.46886 * 60.00445 * 3 2 1 7 7 C 1.38660 * 119.99598 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99895 * 179.97438 * 7 2 1 9 9 O 1.34830 * 120.00116 * 359.97438 * 7 2 1 10 10 C 1.35755 * 117.00014 * 174.93879 * 9 7 2 11 11 C 1.38876 * 120.06635 * 185.31905 * 10 9 7 12 12 C 1.38105 * 119.92787 * 179.72685 * 11 10 9 13 13 C 1.38306 * 120.06626 * 0.52309 * 12 11 10 14 14 C 1.50701 * 119.93064 * 179.74672 * 13 12 11 15 15 N 1.46900 * 109.47322 * 270.02685 * 14 13 12 16 16 C 1.46899 * 111.00070 * 185.03364 * 15 14 13 17 17 H 1.08999 * 109.46943 * 175.27780 * 16 15 14 18 18 C 1.53000 * 109.46988 * 295.27826 * 16 15 14 19 19 C 1.53001 * 109.47085 * 294.99911 * 18 16 15 20 20 O 1.42897 * 109.46735 * 180.02562 * 19 18 16 21 21 C 1.53003 * 109.46844 * 55.27858 * 16 15 14 22 22 C 1.53004 * 117.49606 * 133.78739 * 21 16 15 23 23 C 1.53001 * 117.49890 * 65.12961 * 21 16 15 24 24 C 1.38300 * 120.13875 * 359.77450 * 13 12 11 25 25 C 1.38104 * 120.06993 * 359.95131 * 24 13 12 26 26 H 0.96999 * 119.99403 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.03943 * 359.97438 * 11 10 9 28 28 H 1.07996 * 119.96589 * 180.27900 * 12 11 10 29 29 H 1.09000 * 109.46934 * 30.02509 * 14 13 12 30 30 H 1.09001 * 109.47011 * 150.02276 * 14 13 12 31 31 H 1.00907 * 110.99689 * 61.07795 * 15 14 13 32 32 H 1.08999 * 109.46874 * 55.00278 * 18 16 15 33 33 H 1.08999 * 109.46758 * 175.00022 * 18 16 15 34 34 H 1.09001 * 109.47053 * 299.99903 * 19 18 16 35 35 H 1.08999 * 109.47231 * 60.00401 * 19 18 16 36 36 H 0.96700 * 113.99475 * 180.02562 * 20 19 18 37 37 H 1.08994 * 115.54851 * 279.45713 * 21 16 15 38 38 H 1.09002 * 117.50020 * 0.02562 * 22 21 16 39 39 H 1.09004 * 117.49385 * 145.01650 * 22 21 16 40 40 H 1.09000 * 117.49486 * 214.97684 * 23 21 16 41 41 H 1.09007 * 117.49764 * 359.97438 * 23 21 16 42 42 H 1.07994 * 119.96750 * 179.97438 * 24 13 12 43 43 H 1.07996 * 120.03566 * 179.97438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.7096 1.3462 -0.0006 5 1 1.8910 2.3964 -1.2124 6 1 1.8910 2.3963 1.2126 7 6 2.0088 -1.2009 -0.0005 8 1 3.0889 -1.2009 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0698 -3.5047 -0.1078 11 6 1.4362 -4.7349 -0.2256 12 6 2.1869 -5.8884 -0.3402 13 6 3.5683 -5.8203 -0.3269 14 6 4.3844 -7.0816 -0.4464 15 7 4.6425 -7.6267 0.8931 16 6 5.5360 -8.7907 0.8246 17 1 5.7776 -9.1231 1.8342 18 6 4.8405 -9.9236 0.0673 19 6 3.6214 -10.3954 0.8624 20 8 2.9722 -11.4540 0.1553 21 6 6.8230 -8.4033 0.0935 22 6 8.1496 -8.8364 0.7209 23 6 7.7286 -7.3652 0.7594 24 6 4.2021 -4.5973 -0.2035 25 6 3.4570 -3.4397 -0.0942 26 1 -0.4849 0.8401 0.0004 27 1 0.3577 -4.7891 -0.2315 28 1 1.6949 -6.8449 -0.4363 29 1 3.8357 -7.8148 -1.0375 30 1 5.3320 -6.8561 -0.9357 31 1 3.7794 -7.8603 1.3608 32 1 4.5197 -9.5638 -0.9103 33 1 5.5343 -10.7544 -0.0610 34 1 3.9422 -10.7552 1.8400 35 1 2.9275 -9.5646 0.9907 36 1 2.1886 -11.8026 0.6020 37 1 6.7605 -8.3927 -0.9946 38 1 8.1054 -9.3978 1.6542 39 1 8.9600 -9.1105 0.0454 40 1 8.2622 -6.6720 0.1092 41 1 7.4073 -6.9580 1.7181 42 1 5.2808 -4.5475 -0.1930 43 1 3.9525 -2.4850 0.0025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771797299.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:49 Heat of formation + Delta-G solvation = -32.647833 kcal Electronic energy + Delta-G solvation = -22660.745118 eV Core-core repulsion = 19286.173441 eV Total energy + Delta-G solvation = -3374.571677 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -39.40252 -38.74500 -37.00167 -36.67005 -34.89438 -32.36785 -31.43444 -30.12949 -28.94848 -26.09846 -25.41745 -24.18640 -22.47428 -21.93618 -21.76175 -20.71986 -19.48171 -17.95950 -17.72209 -16.97094 -16.31069 -15.72538 -15.51639 -14.76666 -14.60808 -14.44835 -14.10456 -13.94001 -13.63219 -13.47183 -13.36905 -13.27700 -12.66506 -12.40685 -11.99880 -11.74505 -11.69058 -11.59288 -11.37738 -11.26096 -10.94966 -10.72769 -10.66363 -10.48203 -10.40952 -10.34063 -10.25285 -10.21711 -9.30057 -8.81932 -8.32729 -8.13368 -7.14839 -6.43669 -4.02222 2.25181 2.32945 3.13091 3.14866 3.20403 3.60932 3.87605 3.98090 4.34680 4.54163 4.70232 4.74407 4.80480 4.91051 4.96505 5.06910 5.12064 5.22671 5.28288 5.37878 5.41362 5.45188 5.53433 5.53923 5.71650 5.76662 5.86326 5.88264 5.94361 6.00217 6.05923 6.18924 6.24451 6.46611 6.73488 6.94026 7.03375 7.14308 7.24151 7.32326 7.41689 7.46385 7.51131 7.86496 8.01985 9.02394 9.73134 10.74611 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021858 B = 0.003132 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.695124 B = 8936.843465 C =10049.500786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.390 4.390 8 H 0.092 0.908 9 O -0.180 6.180 10 C 0.155 3.845 11 C -0.194 4.194 12 C -0.070 4.070 13 C -0.181 4.181 14 C 0.114 3.886 15 N -0.674 5.674 16 C 0.121 3.879 17 H 0.081 0.919 18 C -0.155 4.155 19 C 0.074 3.926 20 O -0.575 6.575 21 C -0.146 4.146 22 C -0.183 4.183 23 C -0.158 4.158 24 C -0.049 4.049 25 C -0.235 4.235 26 H 0.269 0.731 27 H 0.115 0.885 28 H 0.105 0.895 29 H 0.029 0.971 30 H 0.074 0.926 31 H 0.339 0.661 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.045 0.955 35 H 0.046 0.954 36 H 0.379 0.621 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.153 -17.994 1.752 21.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.467 4.467 8 H 0.110 0.890 9 O -0.083 6.083 10 C 0.102 3.898 11 C -0.213 4.213 12 C -0.089 4.089 13 C -0.182 4.182 14 C -0.013 4.013 15 N -0.305 5.305 16 C 0.011 3.989 17 H 0.099 0.901 18 C -0.194 4.194 19 C -0.004 4.004 20 O -0.380 6.380 21 C -0.164 4.164 22 C -0.220 4.220 23 C -0.195 4.195 24 C -0.067 4.067 25 C -0.254 4.254 26 H 0.079 0.921 27 H 0.133 0.867 28 H 0.123 0.877 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.159 0.841 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.226 0.774 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.119 0.881 42 H 0.124 0.876 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.712 -17.203 1.493 20.865 hybrid contribution -0.621 0.087 0.040 0.628 sum 11.092 -17.116 1.533 20.453 Atomic orbital electron populations 1.70054 1.05956 1.27502 1.46374 1.25290 0.95840 0.98826 0.96620 0.85649 0.79165 0.80406 0.78226 1.19083 1.20172 1.20160 1.21381 0.91830 0.80833 1.52637 0.89017 1.83976 1.34399 1.11483 1.78454 1.19391 0.90324 0.88001 0.92132 1.20158 0.99415 0.90412 1.11340 1.20472 0.93061 0.96482 0.98870 1.19134 0.93027 0.93903 1.12122 1.20668 0.98436 0.93067 0.89171 1.60727 1.19207 1.30509 1.20013 1.21092 0.91545 0.88199 0.98061 0.90091 1.22264 0.96696 0.99725 1.00724 1.22194 0.94358 0.89312 0.94490 1.86473 1.46218 1.53874 1.51468 1.22144 0.90327 1.05248 0.98722 1.23003 0.97659 0.98753 1.02615 1.22823 1.02166 0.91436 1.03095 1.20559 0.98279 0.91567 0.96342 1.21170 0.93773 0.98973 1.11531 0.92116 0.86723 0.87668 0.95295 0.90762 0.84132 0.90751 0.90862 0.93657 0.93583 0.77398 0.88118 0.89006 0.89091 0.89139 0.88130 0.87559 0.85670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.48 13.67 55.48 0.76 -24.72 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 3 Si 0.94 20.65 29.55 -169.99 -5.02 15.63 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.39 -11.00 9.49 30.89 0.29 -10.71 16 8 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 9 O -0.18 -5.17 9.76 0.03 0.00 -5.17 16 10 C 0.16 3.78 6.65 -39.11 -0.26 3.52 16 11 C -0.19 -4.11 9.99 -39.39 -0.39 -4.51 16 12 C -0.07 -1.24 9.69 -39.60 -0.38 -1.62 16 13 C -0.18 -3.04 5.44 -104.57 -0.57 -3.61 16 14 C 0.11 1.51 5.13 -4.98 -0.03 1.49 16 15 N -0.67 -7.88 6.37 -107.99 -0.69 -8.57 16 16 C 0.12 1.16 2.72 -67.71 -0.18 0.98 16 17 H 0.08 0.74 7.94 -51.93 -0.41 0.33 16 18 C -0.15 -1.47 4.94 -26.73 -0.13 -1.61 16 19 C 0.07 0.66 6.81 37.16 0.25 0.91 16 20 O -0.57 -5.57 13.66 -35.23 -0.48 -6.05 16 21 C -0.15 -1.39 3.73 -90.62 -0.34 -1.73 16 22 C -0.18 -1.52 10.18 -26.69 -0.27 -1.79 16 23 C -0.16 -1.53 10.21 -26.69 -0.27 -1.81 16 24 C -0.05 -0.90 9.69 -39.61 -0.38 -1.29 16 25 C -0.24 -5.16 9.17 -39.39 -0.36 -5.52 16 26 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.11 2.36 8.06 -52.49 -0.42 1.94 16 28 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 29 H 0.03 0.37 6.52 -51.93 -0.34 0.03 16 30 H 0.07 0.97 6.43 -51.93 -0.33 0.64 16 31 H 0.34 3.89 7.14 -39.29 -0.28 3.61 16 32 H 0.07 0.81 6.39 -51.93 -0.33 0.48 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.05 0.41 6.75 -51.93 -0.35 0.06 16 36 H 0.38 1.99 9.12 45.56 0.42 2.40 16 37 H 0.10 0.99 7.69 -51.93 -0.40 0.59 16 38 H 0.09 0.70 8.08 -51.93 -0.42 0.28 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 43 H 0.13 2.77 5.64 -52.49 -0.30 2.47 16 LS Contribution 353.78 15.07 5.33 5.33 Total: -1.00 -31.51 353.78 -8.77 -40.27 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -5.54 Total: 9.60 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: -3.13 Total: -26.31 kcal Atomic # 7 Polarization: -33.36 SS G_CDS: 0.07 Total: -33.29 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -0.48 Total: -11.23 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.51 -8.77 -40.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771797299.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.623 kcal (2) G-P(sol) polarization free energy of solvation -31.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds