Wall clock time and date at job start Tue Mar 31 2020 08:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86792 * 120.00247 * 2 1 4 4 H 1.48500 * 109.47121 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47398 * 300.00090 * 3 2 1 6 6 H 1.48505 * 109.46886 * 60.00445 * 3 2 1 7 7 C 1.38660 * 119.99598 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99895 * 179.97438 * 7 2 1 9 9 O 1.34830 * 120.00116 * 359.97438 * 7 2 1 10 10 C 1.35755 * 117.00014 * 174.93879 * 9 7 2 11 11 C 1.38876 * 120.06635 * 185.31905 * 10 9 7 12 12 C 1.38105 * 119.92787 * 179.72685 * 11 10 9 13 13 C 1.38306 * 120.06626 * 0.52309 * 12 11 10 14 14 C 1.50701 * 119.93064 * 179.74672 * 13 12 11 15 15 N 1.46900 * 109.47322 * 270.02685 * 14 13 12 16 16 C 1.46899 * 111.00070 * 185.03364 * 15 14 13 17 17 H 1.08999 * 109.46943 * 175.27780 * 16 15 14 18 18 C 1.53000 * 109.46988 * 295.27826 * 16 15 14 19 19 C 1.53001 * 109.47085 * 294.99911 * 18 16 15 20 20 O 1.42897 * 109.46735 * 180.02562 * 19 18 16 21 21 C 1.53003 * 109.46844 * 55.27858 * 16 15 14 22 22 C 1.53004 * 117.49606 * 133.78739 * 21 16 15 23 23 C 1.53001 * 117.49890 * 65.12961 * 21 16 15 24 24 C 1.38300 * 120.13875 * 359.77450 * 13 12 11 25 25 C 1.38104 * 120.06993 * 359.95131 * 24 13 12 26 26 H 0.96999 * 119.99403 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.03943 * 359.97438 * 11 10 9 28 28 H 1.07996 * 119.96589 * 180.27900 * 12 11 10 29 29 H 1.09000 * 109.46934 * 30.02509 * 14 13 12 30 30 H 1.09001 * 109.47011 * 150.02276 * 14 13 12 31 31 H 1.00907 * 110.99689 * 61.07795 * 15 14 13 32 32 H 1.08999 * 109.46874 * 55.00278 * 18 16 15 33 33 H 1.08999 * 109.46758 * 175.00022 * 18 16 15 34 34 H 1.09001 * 109.47053 * 299.99903 * 19 18 16 35 35 H 1.08999 * 109.47231 * 60.00401 * 19 18 16 36 36 H 0.96700 * 113.99475 * 180.02562 * 20 19 18 37 37 H 1.08994 * 115.54851 * 279.45713 * 21 16 15 38 38 H 1.09002 * 117.50020 * 0.02562 * 22 21 16 39 39 H 1.09004 * 117.49385 * 145.01650 * 22 21 16 40 40 H 1.09000 * 117.49486 * 214.97684 * 23 21 16 41 41 H 1.09007 * 117.49764 * 359.97438 * 23 21 16 42 42 H 1.07994 * 119.96750 * 179.97438 * 24 13 12 43 43 H 1.07996 * 120.03566 * 179.97438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.7096 1.3462 -0.0006 5 1 1.8910 2.3964 -1.2124 6 1 1.8910 2.3963 1.2126 7 6 2.0088 -1.2009 -0.0005 8 1 3.0889 -1.2009 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0698 -3.5047 -0.1078 11 6 1.4362 -4.7349 -0.2256 12 6 2.1869 -5.8884 -0.3402 13 6 3.5683 -5.8203 -0.3269 14 6 4.3844 -7.0816 -0.4464 15 7 4.6425 -7.6267 0.8931 16 6 5.5360 -8.7907 0.8246 17 1 5.7776 -9.1231 1.8342 18 6 4.8405 -9.9236 0.0673 19 6 3.6214 -10.3954 0.8624 20 8 2.9722 -11.4540 0.1553 21 6 6.8230 -8.4033 0.0935 22 6 8.1496 -8.8364 0.7209 23 6 7.7286 -7.3652 0.7594 24 6 4.2021 -4.5973 -0.2035 25 6 3.4570 -3.4397 -0.0942 26 1 -0.4849 0.8401 0.0004 27 1 0.3577 -4.7891 -0.2315 28 1 1.6949 -6.8449 -0.4363 29 1 3.8357 -7.8148 -1.0375 30 1 5.3320 -6.8561 -0.9357 31 1 3.7794 -7.8603 1.3608 32 1 4.5197 -9.5638 -0.9103 33 1 5.5343 -10.7544 -0.0610 34 1 3.9422 -10.7552 1.8400 35 1 2.9275 -9.5646 0.9907 36 1 2.1886 -11.8026 0.6020 37 1 6.7605 -8.3927 -0.9946 38 1 8.1054 -9.3978 1.6542 39 1 8.9600 -9.1105 0.0454 40 1 8.2622 -6.6720 0.1092 41 1 7.4073 -6.9580 1.7181 42 1 5.2808 -4.5475 -0.1930 43 1 3.9525 -2.4850 0.0025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771797299.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:48 Heat of formation + Delta-G solvation = -54.881749 kcal Electronic energy + Delta-G solvation = -22661.709253 eV Core-core repulsion = 19286.173441 eV Total energy + Delta-G solvation = -3375.535812 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -40.83274 -39.91214 -38.29138 -37.66653 -35.85120 -34.30354 -32.58905 -31.75572 -30.20378 -27.59640 -26.72092 -25.43524 -23.60687 -23.11995 -22.51580 -22.19141 -20.39728 -19.81124 -18.80902 -18.41200 -17.33762 -16.66964 -16.41535 -16.22205 -16.09641 -15.66493 -15.47125 -15.41158 -14.79678 -14.75797 -14.59857 -14.33665 -14.26911 -13.74169 -13.55705 -13.02007 -12.84179 -12.55864 -12.46961 -12.31145 -12.29412 -12.25141 -12.10113 -11.89914 -11.59291 -11.15513 -11.06554 -10.98957 -10.88999 -10.77850 -9.75189 -9.27316 -8.87122 -8.46758 -6.14581 0.62562 0.70968 1.35258 1.43465 1.53627 2.18213 2.76136 2.92789 3.17289 3.24348 3.53180 3.62694 3.86488 3.99753 4.06737 4.11982 4.14929 4.21804 4.24018 4.27148 4.39724 4.49785 4.54923 4.63158 4.67765 4.74983 4.80870 4.86208 4.90059 5.05520 5.11838 5.16067 5.17980 5.20708 5.33137 5.36677 5.44429 5.59271 5.74117 5.85681 6.04313 6.13113 6.27730 6.52288 6.85950 6.98377 7.79887 8.76892 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021858 B = 0.003132 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.695124 B = 8936.843465 C =10049.500786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.252 1.252 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.412 4.412 8 H 0.101 0.899 9 O -0.234 6.234 10 C 0.113 3.887 11 C -0.204 4.204 12 C -0.061 4.061 13 C -0.153 4.153 14 C 0.122 3.878 15 N -0.680 5.680 16 C 0.129 3.871 17 H 0.091 0.909 18 C -0.149 4.149 19 C 0.073 3.927 20 O -0.595 6.595 21 C -0.154 4.154 22 C -0.168 4.168 23 C -0.169 4.169 24 C -0.049 4.049 25 C -0.243 4.243 26 H 0.272 0.728 27 H 0.111 0.889 28 H 0.143 0.857 29 H 0.041 0.959 30 H 0.082 0.918 31 H 0.343 0.657 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.046 0.954 36 H 0.397 0.603 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.134 0.866 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.573 -20.218 1.841 24.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.175 1.175 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.488 4.488 8 H 0.118 0.882 9 O -0.141 6.141 10 C 0.063 3.937 11 C -0.224 4.224 12 C -0.080 4.080 13 C -0.154 4.154 14 C -0.006 4.006 15 N -0.311 5.311 16 C 0.019 3.981 17 H 0.109 0.891 18 C -0.188 4.188 19 C -0.005 4.005 20 O -0.404 6.404 21 C -0.172 4.172 22 C -0.206 4.206 23 C -0.206 4.206 24 C -0.068 4.068 25 C -0.263 4.263 26 H 0.081 0.919 27 H 0.129 0.871 28 H 0.161 0.839 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.162 0.838 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.246 0.754 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.151 0.849 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 14.157 -19.496 1.589 24.147 hybrid contribution -1.250 0.381 0.007 1.307 sum 12.907 -19.116 1.596 23.120 Atomic orbital electron populations 1.70194 1.08012 1.28686 1.49118 1.26586 0.96859 1.02715 0.95930 0.84529 0.78236 0.74862 0.78580 1.17509 1.19332 1.19285 1.21854 0.92479 0.81493 1.53018 0.88213 1.83938 1.35985 1.12617 1.81562 1.19933 0.91583 0.87942 0.94246 1.20422 0.99823 0.90642 1.11490 1.20858 0.93439 0.96670 0.96987 1.19640 0.93135 0.95026 1.07587 1.20591 0.98220 0.91373 0.90439 1.60647 1.19687 1.31939 1.18807 1.21068 0.90994 0.87311 0.98680 0.89142 1.22186 0.97030 0.99561 1.00049 1.22224 0.94079 0.89316 0.94870 1.86424 1.47379 1.54135 1.52459 1.22176 0.90785 1.05602 0.98659 1.23065 0.97043 0.97528 1.02931 1.22804 1.02845 0.92280 1.02666 1.20869 0.99536 0.90935 0.95412 1.21249 0.93092 1.00009 1.11916 0.91869 0.87060 0.83926 0.94056 0.89996 0.83780 0.92004 0.90716 0.92270 0.93542 0.75374 0.88288 0.88156 0.88098 0.89127 0.89177 0.84862 0.86670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.20 13.67 21.62 0.30 -56.90 16 2 C -0.02 -1.36 5.49 84.83 0.47 -0.90 16 3 Si 1.02 43.41 29.55 68.60 2.03 45.44 16 4 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 5 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 6 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 7 C -0.41 -24.40 9.49 67.92 0.64 -23.76 16 8 H 0.10 5.45 5.20 -2.91 -0.02 5.44 16 9 O -0.23 -14.34 9.76 -22.80 -0.22 -14.56 16 10 C 0.11 5.72 6.65 22.58 0.15 5.87 16 11 C -0.20 -8.77 9.99 22.39 0.22 -8.54 16 12 C -0.06 -2.02 9.69 22.25 0.22 -1.81 16 13 C -0.15 -4.71 5.44 -19.83 -0.11 -4.82 16 14 C 0.12 2.77 5.13 85.56 0.44 3.21 16 15 N -0.68 -13.56 6.37 -495.57 -3.16 -16.72 16 16 C 0.13 2.05 2.72 44.92 0.12 2.17 16 17 H 0.09 1.33 7.94 -2.39 -0.02 1.31 16 18 C -0.15 -2.36 4.94 30.59 0.15 -2.21 16 19 C 0.07 1.07 6.81 71.98 0.49 1.56 16 20 O -0.60 -9.93 13.66 -148.98 -2.03 -11.96 16 21 C -0.15 -2.45 3.73 -10.79 -0.04 -2.49 16 22 C -0.17 -2.26 10.18 30.62 0.31 -1.95 16 23 C -0.17 -2.84 10.21 30.62 0.31 -2.53 16 24 C -0.05 -1.73 9.69 22.25 0.22 -1.51 16 25 C -0.24 -10.82 9.17 22.39 0.21 -10.61 16 26 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 27 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 28 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 29 H 0.04 0.89 6.52 -2.39 -0.02 0.87 16 30 H 0.08 1.82 6.43 -2.39 -0.02 1.80 16 31 H 0.34 6.63 7.14 -89.69 -0.64 5.99 16 32 H 0.06 1.15 6.39 -2.39 -0.02 1.13 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.05 0.67 6.75 -2.39 -0.02 0.65 16 36 H 0.40 3.16 9.12 -74.06 -0.68 2.48 16 37 H 0.10 1.63 7.69 -2.39 -0.02 1.61 16 38 H 0.10 1.19 8.08 -2.39 -0.02 1.17 16 39 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 42 H 0.13 3.98 8.06 -2.91 -0.02 3.96 16 43 H 0.12 5.25 5.64 -2.91 -0.02 5.24 16 Total: -1.00 -72.28 353.78 0.42 -71.85 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: -0.28 Total: 31.17 kcal Atomic # 6 Polarization: -52.11 SS G_CDS: 3.80 Total: -48.31 kcal Atomic # 7 Polarization: -70.76 SS G_CDS: -2.86 Total: -73.62 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -2.26 Total: -26.53 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -72.28 0.42 -71.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771797299.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.970 kcal (2) G-P(sol) polarization free energy of solvation -72.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds