Wall clock time and date at job start Tue Mar 31 2020 08:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86798 * 119.99873 * 2 1 4 4 H 1.48506 * 109.46813 * 239.99605 * 3 2 1 5 5 H 1.48493 * 109.47454 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47031 * 120.00024 * 3 2 1 7 7 C 1.38652 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00508 * 180.02562 * 7 2 1 9 9 O 1.34836 * 120.00212 * 359.97438 * 7 2 1 10 10 C 1.35748 * 117.00282 * 185.08294 * 9 7 2 11 11 C 1.38878 * 120.06738 * 354.23231 * 10 9 7 12 12 C 1.38102 * 119.93042 * 180.02562 * 11 10 9 13 13 C 1.38305 * 120.06502 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.92792 * 179.97438 * 13 12 11 15 15 N 1.46905 * 109.46899 * 90.00532 * 14 13 12 16 16 C 1.46895 * 110.99912 * 184.90839 * 15 14 13 17 17 H 1.08999 * 109.47644 * 329.31052 * 16 15 14 18 18 C 1.53001 * 109.46946 * 209.30759 * 16 15 14 19 19 C 1.52992 * 109.47200 * 65.00397 * 18 16 15 20 20 O 1.42895 * 109.47464 * 179.97438 * 19 18 16 21 21 C 1.53009 * 109.47276 * 89.31176 * 16 15 14 22 22 C 1.52997 * 117.49950 * 244.11285 * 21 16 15 23 23 C 1.52991 * 117.50082 * 175.44558 * 21 16 15 24 24 C 1.38304 * 120.14154 * 0.25534 * 13 12 11 25 25 C 1.38102 * 120.06549 * 359.44567 * 24 13 12 26 26 H 0.96996 * 119.99813 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.03826 * 0.02562 * 11 10 9 28 28 H 1.07995 * 119.96825 * 180.02562 * 12 11 10 29 29 H 1.09004 * 109.47181 * 330.00586 * 14 13 12 30 30 H 1.08997 * 109.47334 * 209.99789 * 14 13 12 31 31 H 1.00907 * 110.99929 * 308.86196 * 15 14 13 32 32 H 1.09004 * 109.46811 * 185.00348 * 18 16 15 33 33 H 1.09001 * 109.47580 * 305.00128 * 18 16 15 34 34 H 1.09004 * 109.47199 * 299.99713 * 19 18 16 35 35 H 1.09002 * 109.47597 * 59.99478 * 19 18 16 36 36 H 0.96706 * 114.00445 * 179.97438 * 20 19 18 37 37 H 1.09002 * 115.54360 * 29.77342 * 21 16 15 38 38 H 1.08998 * 117.49777 * 359.97438 * 22 21 16 39 39 H 1.08996 * 117.50368 * 145.02142 * 22 21 16 40 40 H 1.09005 * 117.49922 * 214.97541 * 23 21 16 41 41 H 1.09000 * 117.50081 * 359.97438 * 23 21 16 42 42 H 1.07998 * 119.96616 * 179.70067 * 24 13 12 43 43 H 1.07996 * 120.03356 * 180.27760 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1034 1.6963 -1.2125 5 1 1.2846 2.7464 -0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0889 -1.2009 0.0010 9 8 1.3347 -2.3685 0.0016 10 6 2.0700 -3.5045 0.1092 11 6 3.4571 -3.4399 0.0914 12 6 4.2023 -4.5975 0.2005 13 6 3.5685 -5.8202 0.3270 14 6 4.3847 -7.0815 0.4453 15 7 4.6612 -7.3547 1.8620 16 6 5.5529 -8.5125 2.0106 17 1 5.3849 -9.2085 1.1887 18 6 5.2623 -9.2128 3.3395 19 6 3.8470 -9.7931 3.3113 20 8 3.5757 -10.4477 4.5522 21 6 7.0085 -8.0412 1.9902 22 6 7.8895 -8.5186 0.8340 23 6 8.0942 -9.0900 2.2393 24 6 2.1872 -5.8885 0.3393 25 6 1.4365 -4.7339 0.2367 26 1 -0.4850 0.8400 -0.0004 27 1 3.9526 -2.4854 -0.0078 28 1 5.2811 -4.5479 0.1871 29 1 5.3255 -6.9572 -0.0911 30 1 3.8292 -7.9154 0.0163 31 1 5.0456 -6.5412 2.3189 32 1 5.9819 -10.0174 3.4912 33 1 5.3440 -8.4939 4.1547 34 1 3.1273 -8.9885 3.1597 35 1 3.7651 -10.5121 2.4962 36 1 2.6933 -10.8399 4.6054 37 1 7.1824 -7.0358 2.3736 38 1 7.4323 -9.1687 0.0881 39 1 8.6434 -7.8275 0.4571 40 1 8.9827 -8.7744 2.7863 41 1 7.7716 -10.1157 2.4182 42 1 1.6952 -6.8452 0.4333 43 1 0.3580 -4.7873 0.2509 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771797300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:55 Heat of formation + Delta-G solvation = -36.077070 kcal Electronic energy + Delta-G solvation = -22432.045019 eV Core-core repulsion = 19057.324639 eV Total energy + Delta-G solvation = -3374.720380 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 4.74 seconds Orbital eigenvalues (eV) -39.28512 -38.75874 -36.84055 -36.74304 -34.77190 -32.40564 -31.67656 -30.16358 -29.05323 -26.03034 -25.22001 -23.56216 -22.81076 -21.95930 -21.77216 -20.64963 -20.14814 -17.98077 -17.39951 -17.00046 -16.39752 -15.67685 -15.18588 -14.88585 -14.60913 -14.44776 -14.06503 -13.72923 -13.68849 -13.53195 -13.45007 -12.78797 -12.67336 -12.42871 -12.12984 -11.93530 -11.76823 -11.54777 -11.39805 -11.23827 -10.98345 -10.81600 -10.71282 -10.65043 -10.57579 -10.43983 -10.15649 -9.96844 -9.34377 -8.84138 -8.35567 -8.16905 -7.18563 -6.45637 -4.04692 2.22455 2.28087 3.12257 3.13371 3.16297 3.48594 3.95967 4.06388 4.20829 4.48658 4.64260 4.71356 4.79042 4.99257 5.08777 5.12599 5.24385 5.28371 5.31930 5.35768 5.39445 5.47058 5.48405 5.62573 5.70595 5.79904 5.82566 5.85128 5.88656 5.91504 6.08215 6.10129 6.21285 6.43182 6.70687 6.89893 7.02217 7.09730 7.26167 7.35458 7.43320 7.48553 7.54107 7.82999 7.99294 8.99878 9.70164 10.72348 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020702 B = 0.002958 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.190660 B = 9463.230863 C =10188.468573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.393 4.393 8 H 0.091 0.909 9 O -0.178 6.178 10 C 0.156 3.844 11 C -0.235 4.235 12 C -0.065 4.065 13 C -0.187 4.187 14 C 0.118 3.882 15 N -0.676 5.676 16 C 0.119 3.881 17 H 0.076 0.924 18 C -0.102 4.102 19 C 0.079 3.921 20 O -0.582 6.582 21 C -0.179 4.179 22 C -0.178 4.178 23 C -0.176 4.176 24 C -0.052 4.052 25 C -0.195 4.195 26 H 0.271 0.729 27 H 0.125 0.875 28 H 0.102 0.898 29 H 0.031 0.969 30 H 0.068 0.932 31 H 0.345 0.655 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.035 0.965 36 H 0.377 0.623 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.111 0.889 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.821 -17.154 3.200 21.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.108 0.892 9 O -0.081 6.081 10 C 0.102 3.898 11 C -0.254 4.254 12 C -0.084 4.084 13 C -0.188 4.188 14 C -0.009 4.009 15 N -0.307 5.307 16 C 0.008 3.992 17 H 0.094 0.906 18 C -0.140 4.140 19 C 0.002 3.998 20 O -0.388 6.388 21 C -0.199 4.199 22 C -0.215 4.215 23 C -0.213 4.213 24 C -0.071 4.071 25 C -0.214 4.214 26 H 0.080 0.920 27 H 0.143 0.857 28 H 0.120 0.880 29 H 0.049 0.951 30 H 0.086 0.914 31 H 0.164 0.836 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.223 0.777 37 H 0.123 0.877 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.129 0.871 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 11.399 -17.087 3.382 20.817 hybrid contribution 0.876 1.157 -0.479 1.528 sum 12.275 -15.930 2.903 20.319 Atomic orbital electron populations 1.70028 1.05962 1.27792 1.45982 1.25284 0.95835 0.98821 0.96533 0.85789 0.78713 0.79804 0.79173 1.19524 1.20257 1.19490 1.21276 0.91750 0.80862 1.53007 0.89156 1.83979 1.34366 1.11474 1.78286 1.19401 0.90279 0.88061 0.92037 1.21117 0.93833 0.98805 1.11651 1.20585 0.97993 0.91962 0.97849 1.19133 0.93678 0.93496 1.12495 1.20651 0.96977 0.95419 0.87900 1.60800 1.47459 1.07995 1.14413 1.21124 0.87361 0.93359 0.97348 0.90594 1.21430 0.95504 0.99531 0.97500 1.22150 0.97755 0.95389 0.84529 1.86429 1.38263 1.75979 1.38079 1.23215 0.93342 0.99454 1.03899 1.23023 1.03034 1.03846 0.91640 1.22922 1.00356 0.98744 0.99292 1.20458 0.92856 0.96608 0.97199 1.20227 0.99575 0.90388 1.11213 0.91953 0.85697 0.87974 0.95124 0.91402 0.83609 0.91518 0.91094 0.91785 0.94651 0.77655 0.87707 0.88838 0.88945 0.88941 0.88630 0.87126 0.86602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.33 13.67 55.48 0.76 -24.57 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.48 29.55 -169.99 -5.02 15.46 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.39 -10.98 9.49 30.89 0.29 -10.69 16 8 H 0.09 2.33 5.21 -52.49 -0.27 2.06 16 9 O -0.18 -5.08 9.76 0.04 0.00 -5.08 16 10 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16 11 C -0.23 -5.04 9.17 -39.39 -0.36 -5.41 16 12 C -0.07 -1.16 9.69 -39.61 -0.38 -1.54 16 13 C -0.19 -3.06 5.34 -104.57 -0.56 -3.62 16 14 C 0.12 1.51 5.60 -4.97 -0.03 1.49 16 15 N -0.68 -7.89 5.74 -107.99 -0.62 -8.51 16 16 C 0.12 1.15 2.26 -67.71 -0.15 1.00 16 17 H 0.08 0.73 7.53 -51.93 -0.39 0.34 16 18 C -0.10 -1.02 5.13 -26.73 -0.14 -1.16 16 19 C 0.08 0.81 6.93 37.15 0.26 1.07 16 20 O -0.58 -6.20 13.66 -35.23 -0.48 -6.68 16 21 C -0.18 -1.61 5.30 -90.62 -0.48 -2.09 16 22 C -0.18 -1.48 10.18 -26.69 -0.27 -1.75 16 23 C -0.18 -1.39 9.65 -26.69 -0.26 -1.65 16 24 C -0.05 -0.92 9.69 -39.61 -0.38 -1.31 16 25 C -0.19 -4.10 9.99 -39.39 -0.39 -4.49 16 26 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.13 2.70 5.64 -52.49 -0.30 2.40 16 28 H 0.10 1.56 8.06 -52.49 -0.42 1.13 16 29 H 0.03 0.38 8.05 -51.93 -0.42 -0.04 16 30 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 31 H 0.34 4.22 8.13 -39.29 -0.32 3.90 16 32 H 0.07 0.64 6.84 -51.93 -0.36 0.28 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.73 7.75 -51.93 -0.40 0.32 16 35 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.38 2.37 9.12 45.56 0.42 2.79 16 37 H 0.10 1.00 7.82 -51.93 -0.41 0.59 16 38 H 0.09 0.75 8.03 -51.93 -0.42 0.33 16 39 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.10 0.72 7.29 -51.93 -0.38 0.34 16 42 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 43 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 358.81 15.07 5.41 5.41 Total: -1.00 -30.94 358.81 -8.93 -39.87 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -5.76 Total: 9.77 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: -3.21 Total: -25.66 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.14 Total: -33.08 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -0.48 Total: -11.76 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.94 -8.93 -39.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771797300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.791 kcal (2) G-P(sol) polarization free energy of solvation -30.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.74 seconds