Wall clock time and date at job start Tue Mar 31 2020 08:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86798 * 119.99873 * 2 1 4 4 H 1.48506 * 109.46813 * 239.99605 * 3 2 1 5 5 H 1.48493 * 109.47454 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47031 * 120.00024 * 3 2 1 7 7 C 1.38652 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00508 * 180.02562 * 7 2 1 9 9 O 1.34836 * 120.00212 * 359.97438 * 7 2 1 10 10 C 1.35748 * 117.00282 * 185.08294 * 9 7 2 11 11 C 1.38878 * 120.06738 * 354.23231 * 10 9 7 12 12 C 1.38102 * 119.93042 * 180.02562 * 11 10 9 13 13 C 1.38305 * 120.06502 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.92792 * 179.97438 * 13 12 11 15 15 N 1.46905 * 109.46899 * 90.00532 * 14 13 12 16 16 C 1.46895 * 110.99912 * 184.90839 * 15 14 13 17 17 H 1.08999 * 109.47644 * 329.31052 * 16 15 14 18 18 C 1.53001 * 109.46946 * 209.30759 * 16 15 14 19 19 C 1.52992 * 109.47200 * 65.00397 * 18 16 15 20 20 O 1.42895 * 109.47464 * 179.97438 * 19 18 16 21 21 C 1.53009 * 109.47276 * 89.31176 * 16 15 14 22 22 C 1.52997 * 117.49950 * 244.11285 * 21 16 15 23 23 C 1.52991 * 117.50082 * 175.44558 * 21 16 15 24 24 C 1.38304 * 120.14154 * 0.25534 * 13 12 11 25 25 C 1.38102 * 120.06549 * 359.44567 * 24 13 12 26 26 H 0.96996 * 119.99813 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.03826 * 0.02562 * 11 10 9 28 28 H 1.07995 * 119.96825 * 180.02562 * 12 11 10 29 29 H 1.09004 * 109.47181 * 330.00586 * 14 13 12 30 30 H 1.08997 * 109.47334 * 209.99789 * 14 13 12 31 31 H 1.00907 * 110.99929 * 308.86196 * 15 14 13 32 32 H 1.09004 * 109.46811 * 185.00348 * 18 16 15 33 33 H 1.09001 * 109.47580 * 305.00128 * 18 16 15 34 34 H 1.09004 * 109.47199 * 299.99713 * 19 18 16 35 35 H 1.09002 * 109.47597 * 59.99478 * 19 18 16 36 36 H 0.96706 * 114.00445 * 179.97438 * 20 19 18 37 37 H 1.09002 * 115.54360 * 29.77342 * 21 16 15 38 38 H 1.08998 * 117.49777 * 359.97438 * 22 21 16 39 39 H 1.08996 * 117.50368 * 145.02142 * 22 21 16 40 40 H 1.09005 * 117.49922 * 214.97541 * 23 21 16 41 41 H 1.09000 * 117.50081 * 359.97438 * 23 21 16 42 42 H 1.07998 * 119.96616 * 179.70067 * 24 13 12 43 43 H 1.07996 * 120.03356 * 180.27760 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1034 1.6963 -1.2125 5 1 1.2846 2.7464 -0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0889 -1.2009 0.0010 9 8 1.3347 -2.3685 0.0016 10 6 2.0700 -3.5045 0.1092 11 6 3.4571 -3.4399 0.0914 12 6 4.2023 -4.5975 0.2005 13 6 3.5685 -5.8202 0.3270 14 6 4.3847 -7.0815 0.4453 15 7 4.6612 -7.3547 1.8620 16 6 5.5529 -8.5125 2.0106 17 1 5.3849 -9.2085 1.1887 18 6 5.2623 -9.2128 3.3395 19 6 3.8470 -9.7931 3.3113 20 8 3.5757 -10.4477 4.5522 21 6 7.0085 -8.0412 1.9902 22 6 7.8895 -8.5186 0.8340 23 6 8.0942 -9.0900 2.2393 24 6 2.1872 -5.8885 0.3393 25 6 1.4365 -4.7339 0.2367 26 1 -0.4850 0.8400 -0.0004 27 1 3.9526 -2.4854 -0.0078 28 1 5.2811 -4.5479 0.1871 29 1 5.3255 -6.9572 -0.0911 30 1 3.8292 -7.9154 0.0163 31 1 5.0456 -6.5412 2.3189 32 1 5.9819 -10.0174 3.4912 33 1 5.3440 -8.4939 4.1547 34 1 3.1273 -8.9885 3.1597 35 1 3.7651 -10.5121 2.4962 36 1 2.6933 -10.8399 4.6054 37 1 7.1824 -7.0358 2.3736 38 1 7.4323 -9.1687 0.0881 39 1 8.6434 -7.8275 0.4571 40 1 8.9827 -8.7744 2.7863 41 1 7.7716 -10.1157 2.4182 42 1 1.6952 -6.8452 0.4333 43 1 0.3580 -4.7873 0.2509 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771797300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:54 Heat of formation + Delta-G solvation = -57.468628 kcal Electronic energy + Delta-G solvation = -22432.972626 eV Core-core repulsion = 19057.324639 eV Total energy + Delta-G solvation = -3375.647987 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.80611 -39.75631 -38.37342 -37.54863 -35.76705 -34.29582 -32.77992 -31.75875 -30.36246 -27.59360 -26.59254 -24.71106 -23.59401 -23.44675 -22.47500 -21.98976 -21.09962 -19.82225 -18.83843 -18.16232 -17.19675 -16.71756 -16.40816 -16.29097 -15.93399 -15.78433 -15.50892 -15.19017 -14.90483 -14.69670 -14.40225 -14.28603 -13.90174 -13.80546 -13.47637 -13.16273 -12.85783 -12.66534 -12.48852 -12.38420 -12.29002 -12.17320 -12.13858 -11.90761 -11.66941 -11.37736 -11.16539 -10.86972 -10.77943 -10.74026 -9.75791 -9.27900 -8.87400 -8.46896 -6.15227 0.62474 0.69763 1.34518 1.45275 1.50911 2.17915 2.79157 2.84564 3.11142 3.39810 3.50410 3.54401 3.81246 4.03655 4.09788 4.11130 4.11769 4.23411 4.25607 4.39598 4.48295 4.53053 4.62916 4.64048 4.72728 4.79927 4.81292 4.84618 4.97516 5.05502 5.11763 5.15892 5.17967 5.25511 5.30748 5.31436 5.34152 5.59517 5.73124 5.84051 6.03484 6.16337 6.27887 6.48768 6.95856 6.97789 7.79454 8.76320 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020702 B = 0.002958 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.190660 B = 9463.230863 C =10188.468573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.023 4.023 3 Si 1.018 2.982 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.415 4.415 8 H 0.101 0.899 9 O -0.234 6.234 10 C 0.113 3.887 11 C -0.244 4.244 12 C -0.062 4.062 13 C -0.157 4.157 14 C 0.125 3.875 15 N -0.681 5.681 16 C 0.128 3.872 17 H 0.085 0.915 18 C -0.099 4.099 19 C 0.080 3.920 20 O -0.601 6.601 21 C -0.188 4.188 22 C -0.177 4.177 23 C -0.171 4.171 24 C -0.047 4.047 25 C -0.207 4.207 26 H 0.273 0.727 27 H 0.116 0.884 28 H 0.136 0.864 29 H 0.045 0.955 30 H 0.084 0.916 31 H 0.342 0.658 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.394 0.606 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.145 0.855 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.564 -19.400 3.219 24.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.491 4.491 8 H 0.118 0.882 9 O -0.141 6.141 10 C 0.063 3.937 11 C -0.263 4.263 12 C -0.080 4.080 13 C -0.158 4.158 14 C -0.003 4.003 15 N -0.312 5.312 16 C 0.018 3.982 17 H 0.103 0.897 18 C -0.137 4.137 19 C 0.003 3.997 20 O -0.409 6.409 21 C -0.208 4.208 22 C -0.214 4.214 23 C -0.208 4.208 24 C -0.065 4.065 25 C -0.226 4.226 26 H 0.082 0.918 27 H 0.134 0.866 28 H 0.154 0.846 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.161 0.839 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.243 0.757 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.120 0.880 42 H 0.163 0.837 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 14.169 -19.404 3.405 24.266 hybrid contribution 0.149 1.447 -0.424 1.515 sum 14.317 -17.957 2.981 23.159 Atomic orbital electron populations 1.70180 1.08045 1.28854 1.48925 1.26589 0.96841 1.02746 0.95871 0.84659 0.77408 0.74297 0.79927 1.18104 1.19622 1.18195 1.21782 0.92490 0.81507 1.53284 0.88162 1.83941 1.36007 1.12629 1.81503 1.19953 0.91665 0.87921 0.94152 1.21225 0.93051 1.00032 1.12003 1.20937 0.99566 0.91063 0.96458 1.19649 0.93608 0.94765 1.07826 1.20638 0.97116 0.93628 0.88963 1.60744 1.48573 1.08480 1.13396 1.21051 0.87373 0.92453 0.97343 0.89718 1.21407 0.95759 0.99340 0.97164 1.22138 0.97377 0.95351 0.84862 1.86388 1.39904 1.76155 1.38437 1.23126 0.93141 0.99549 1.05008 1.23085 1.02711 1.03817 0.91738 1.22982 0.99983 0.98700 0.99157 1.20854 0.93483 0.96636 0.95559 1.20479 0.99897 0.90730 1.11535 0.91843 0.86586 0.84593 0.93661 0.89768 0.83950 0.90833 0.92651 0.93066 0.93242 0.75680 0.88318 0.88250 0.88743 0.88500 0.88047 0.83736 0.87169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.13 13.67 21.61 0.30 -56.84 16 2 C -0.02 -1.33 5.49 84.83 0.47 -0.86 16 3 Si 1.02 43.06 29.55 68.60 2.03 45.09 16 4 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 6 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 7 C -0.41 -24.38 9.49 67.92 0.64 -23.73 16 8 H 0.10 5.40 5.21 -2.91 -0.02 5.38 16 9 O -0.23 -14.27 9.76 -22.78 -0.22 -14.49 16 10 C 0.11 5.68 6.65 22.58 0.15 5.83 16 11 C -0.24 -10.55 9.17 22.39 0.21 -10.35 16 12 C -0.06 -2.05 9.69 22.25 0.22 -1.83 16 13 C -0.16 -4.66 5.34 -19.83 -0.11 -4.76 16 14 C 0.12 2.62 5.60 85.56 0.48 3.10 16 15 N -0.68 -13.50 5.74 -495.56 -2.85 -16.35 16 16 C 0.13 2.03 2.26 44.92 0.10 2.14 16 17 H 0.08 1.25 7.53 -2.39 -0.02 1.23 16 18 C -0.10 -1.72 5.13 30.59 0.16 -1.57 16 19 C 0.08 1.43 6.93 71.98 0.50 1.93 16 20 O -0.60 -11.54 13.66 -148.98 -2.03 -13.58 16 21 C -0.19 -2.80 5.30 -10.79 -0.06 -2.85 16 22 C -0.18 -2.32 10.18 30.62 0.31 -2.00 16 23 C -0.17 -2.18 9.65 30.62 0.30 -1.88 16 24 C -0.05 -1.55 9.69 22.25 0.22 -1.33 16 25 C -0.21 -8.86 9.99 22.39 0.22 -8.64 16 26 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 27 H 0.12 5.14 5.64 -2.91 -0.02 5.12 16 28 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 29 H 0.05 0.88 8.05 -2.38 -0.02 0.86 16 30 H 0.08 1.60 8.08 -2.39 -0.02 1.58 16 31 H 0.34 7.31 8.13 -89.69 -0.73 6.58 16 32 H 0.07 1.20 6.84 -2.38 -0.02 1.18 16 33 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.05 1.04 7.75 -2.38 -0.02 1.02 16 35 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.39 4.17 9.12 -74.05 -0.68 3.50 16 37 H 0.10 1.61 7.82 -2.39 -0.02 1.59 16 38 H 0.10 1.20 8.03 -2.39 -0.02 1.18 16 39 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 41 H 0.10 1.18 7.29 -2.39 -0.02 1.17 16 42 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 43 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -71.59 358.81 0.64 -70.95 By element: Atomic # 1 Polarization: 32.40 SS G_CDS: -0.38 Total: 32.02 kcal Atomic # 6 Polarization: -50.61 SS G_CDS: 3.80 Total: -46.81 kcal Atomic # 7 Polarization: -70.64 SS G_CDS: -2.55 Total: -73.19 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -2.26 Total: -28.07 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -71.59 0.64 -70.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771797300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.485 kcal (2) G-P(sol) polarization free energy of solvation -71.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds