Wall clock time and date at job start Tue Mar 31 2020 07:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86799 * 119.99872 * 2 1 4 4 H 1.48498 * 109.46912 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47307 * 300.00645 * 3 2 1 6 6 H 1.48500 * 109.46658 * 60.00790 * 3 2 1 7 7 C 1.38651 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99854 * 179.97438 * 7 2 1 9 9 O 1.34832 * 120.00112 * 359.97438 * 7 2 1 10 10 C 1.35752 * 116.99897 * 185.05612 * 9 7 2 11 11 C 1.38873 * 120.06869 * 354.46081 * 10 9 7 12 12 C 1.38102 * 119.93127 * 179.97438 * 11 10 9 13 13 C 1.38299 * 120.06800 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.93358 * 179.97438 * 13 12 11 15 15 N 1.46908 * 109.46853 * 89.99575 * 14 13 12 16 16 C 1.48531 * 110.99984 * 287.39471 * 15 14 13 17 17 C 1.54934 * 103.22366 * 200.27882 * 16 15 14 18 18 C 1.54598 * 102.92239 * 37.42212 * 17 16 15 19 19 C 1.47902 * 110.99497 * 170.00103 * 15 14 13 20 20 H 1.08999 * 109.91939 * 26.49355 * 19 15 14 21 21 C 1.53000 * 110.08460 * 265.28695 * 19 15 14 22 22 C 1.53003 * 109.46836 * 65.86065 * 21 19 15 23 23 O 1.42906 * 109.47046 * 180.02562 * 22 21 19 24 24 C 1.38300 * 120.13843 * 0.27044 * 13 12 11 25 25 C 1.38098 * 120.06829 * 359.49614 * 24 13 12 26 26 H 0.96994 * 120.00041 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.03854 * 359.95891 * 11 10 9 28 28 H 1.08000 * 119.96893 * 179.97438 * 12 11 10 29 29 H 1.08995 * 109.47322 * 329.99964 * 14 13 12 30 30 H 1.08999 * 109.47368 * 209.99858 * 14 13 12 31 31 H 1.08993 * 110.67252 * 318.71865 * 16 15 14 32 32 H 1.09000 * 110.66139 * 81.67855 * 16 15 14 33 33 H 1.08994 * 110.73121 * 279.05506 * 17 16 15 34 34 H 1.09013 * 110.72022 * 155.77535 * 17 16 15 35 35 H 1.08999 * 110.30402 * 219.12270 * 18 17 16 36 36 H 1.08997 * 110.30980 * 96.95379 * 18 17 16 37 37 H 1.09002 * 109.47534 * 185.86197 * 21 19 15 38 38 H 1.09003 * 109.47228 * 305.86734 * 21 19 15 39 39 H 1.09002 * 109.47156 * 299.99800 * 22 21 19 40 40 H 1.08993 * 109.47379 * 60.00111 * 22 21 19 41 41 H 0.96696 * 113.99422 * 179.97438 * 23 22 21 42 42 H 1.08006 * 119.96859 * 179.72599 * 24 13 12 43 43 H 1.08002 * 120.03789 * 180.25445 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8907 2.3965 -1.2123 6 1 1.8909 2.3963 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0701 -3.5046 0.1055 11 6 3.4572 -3.4394 0.0919 12 6 4.2025 -4.5970 0.2006 13 6 3.5689 -5.8201 0.3233 14 6 4.3851 -7.0815 0.4410 15 7 4.6587 -7.3572 1.8579 16 6 5.6593 -6.4038 2.4021 17 6 6.1995 -7.1349 3.6568 18 6 6.2415 -8.6126 3.2045 19 6 5.2476 -8.7027 2.0318 20 1 5.7714 -8.9991 1.1230 21 6 4.1503 -9.7186 2.3555 22 6 3.2194 -9.8653 1.1500 23 8 2.1942 -10.8137 1.4525 24 6 2.1876 -5.8888 0.3321 25 6 1.4367 -4.7345 0.2287 26 1 -0.4850 0.8400 0.0004 27 1 3.9527 -2.4846 -0.0037 28 1 5.2813 -4.5471 0.1897 29 1 5.3269 -6.9559 -0.0931 30 1 3.8308 -7.9147 0.0092 31 1 6.4594 -6.2330 1.6820 32 1 5.1836 -5.4624 2.6771 33 1 5.5199 -7.0085 4.4994 34 1 7.1989 -6.7802 3.9094 35 1 5.9269 -9.2662 4.0181 36 1 7.2448 -8.8779 2.8714 37 1 4.6039 -10.6831 2.5837 38 1 3.5779 -9.3733 3.2165 39 1 2.7658 -8.9008 0.9218 40 1 3.7916 -10.2105 0.2890 41 1 1.5659 -10.9569 0.7316 42 1 1.6956 -6.8460 0.4236 43 1 0.3581 -4.7883 0.2397 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778268353.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:22 Heat of formation + Delta-G solvation = -52.606774 kcal Electronic energy + Delta-G solvation = -23154.046718 eV Core-core repulsion = 19778.609556 eV Total energy + Delta-G solvation = -3375.437162 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 3.10 seconds Orbital eigenvalues (eV) -39.73280 -38.77178 -36.86519 -36.48135 -32.85489 -32.21170 -32.06610 -30.15192 -28.91249 -27.25662 -25.64419 -24.61445 -22.53331 -21.96342 -21.07973 -20.27974 -20.24298 -17.97904 -17.39287 -16.94116 -16.25845 -15.57520 -15.32028 -14.72813 -14.58475 -14.33232 -14.04663 -13.81641 -13.64485 -13.52774 -13.10555 -12.73037 -12.62311 -12.51404 -12.14792 -11.90636 -11.69298 -11.61551 -11.27897 -11.21482 -11.04473 -10.88780 -10.75761 -10.65662 -10.56478 -10.45411 -10.39074 -9.90726 -9.31741 -8.83653 -8.37382 -8.15302 -7.16453 -6.44834 -4.03652 2.23693 2.29269 3.11757 3.13416 3.18929 3.95943 3.98656 4.06545 4.50390 4.65789 4.72643 4.86484 4.99240 5.10247 5.17022 5.18708 5.25109 5.29502 5.35437 5.41778 5.44974 5.57295 5.65049 5.71596 5.73397 5.79712 5.86504 5.89690 6.01015 6.03405 6.11535 6.20158 6.23389 6.43066 6.71544 6.90502 6.92007 7.08719 7.13191 7.27921 7.40642 7.45357 7.51789 7.84066 8.00379 9.00991 9.71664 10.73363 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023028 B = 0.003417 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.626777 B = 8192.454277 C = 9054.736666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.179 6.179 10 C 0.156 3.844 11 C -0.234 4.234 12 C -0.064 4.064 13 C -0.176 4.176 14 C 0.098 3.902 15 N -0.505 5.505 16 C 0.039 3.961 17 C -0.124 4.124 18 C -0.125 4.125 19 C 0.065 3.935 20 H 0.050 0.950 21 C -0.101 4.101 22 C 0.069 3.931 23 O -0.578 6.578 24 C -0.054 4.054 25 C -0.193 4.193 26 H 0.269 0.731 27 H 0.125 0.875 28 H 0.101 0.899 29 H 0.034 0.966 30 H 0.076 0.924 31 H 0.041 0.959 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.036 0.964 41 H 0.378 0.622 42 H 0.108 0.892 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.287 -16.269 2.824 20.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.082 6.082 10 C 0.102 3.898 11 C -0.253 4.253 12 C -0.083 4.083 13 C -0.177 4.177 14 C -0.029 4.029 15 N -0.229 5.229 16 C -0.089 4.089 17 C -0.162 4.162 18 C -0.163 4.163 19 C -0.044 4.044 20 H 0.068 0.932 21 C -0.139 4.139 22 C -0.008 4.008 23 O -0.383 6.383 24 C -0.073 4.073 25 C -0.213 4.213 26 H 0.079 0.921 27 H 0.143 0.857 28 H 0.119 0.881 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.055 0.945 41 H 0.224 0.776 42 H 0.126 0.874 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.685 -16.032 3.629 19.605 hybrid contribution 0.991 0.892 -1.084 1.718 sum 11.676 -15.140 2.545 19.288 Atomic orbital electron populations 1.70048 1.05948 1.27534 1.46239 1.25286 0.95835 0.98816 0.96598 0.85654 0.79118 0.80436 0.78256 1.19135 1.20162 1.20125 1.21367 0.91794 0.80847 1.52750 0.89068 1.83981 1.34365 1.11468 1.78409 1.19388 0.90268 0.88046 0.92123 1.21113 0.93822 0.98767 1.11598 1.20564 0.97930 0.91908 0.97888 1.19010 0.93487 0.93335 1.11892 1.21133 0.97670 0.96300 0.87804 1.64781 1.40113 1.00850 1.17203 1.23212 0.93245 0.97114 0.95286 1.22488 1.00926 0.94441 0.98351 1.22418 0.98406 0.97659 0.97788 1.22317 0.93782 0.90654 0.97599 0.93224 1.21497 0.95930 0.97856 0.98577 1.22449 0.89317 0.92032 0.97021 1.86445 1.43007 1.64092 1.44789 1.20407 0.92799 0.96548 0.97529 1.20205 0.99535 0.90350 1.11170 0.92084 0.85696 0.88065 0.94824 0.90612 0.94073 0.89502 0.90696 0.91306 0.90869 0.91645 0.91537 0.90327 0.91975 0.94539 0.77573 0.87378 0.86612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.38 13.67 55.48 0.76 -24.62 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.54 29.55 -169.99 -5.02 15.52 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.39 -10.97 9.49 30.88 0.29 -10.67 16 8 H 0.09 2.37 5.20 -52.48 -0.27 2.10 16 9 O -0.18 -5.13 9.76 0.04 0.00 -5.13 16 10 C 0.16 3.77 6.65 -39.11 -0.26 3.51 16 11 C -0.23 -5.06 9.17 -39.40 -0.36 -5.42 16 12 C -0.06 -1.16 8.81 -39.61 -0.35 -1.51 16 13 C -0.18 -2.95 5.16 -104.58 -0.54 -3.49 16 14 C 0.10 1.30 4.39 -4.97 -0.02 1.28 16 15 N -0.50 -6.41 4.70 -224.01 -1.05 -7.46 16 16 C 0.04 0.47 5.68 -1.90 -0.01 0.46 16 17 C -0.12 -1.23 7.06 -24.87 -0.18 -1.41 16 18 C -0.12 -1.13 6.57 -25.37 -0.17 -1.30 16 19 C 0.07 0.68 2.60 -66.64 -0.17 0.51 16 20 H 0.05 0.50 7.77 -51.93 -0.40 0.09 16 21 C -0.10 -1.07 5.05 -26.73 -0.13 -1.20 16 22 C 0.07 0.73 5.90 37.16 0.22 0.95 16 23 O -0.58 -6.36 13.66 -35.23 -0.48 -6.84 16 24 C -0.05 -0.97 9.69 -39.61 -0.38 -1.35 16 25 C -0.19 -4.11 9.99 -39.39 -0.39 -4.50 16 26 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.13 2.72 5.64 -52.49 -0.30 2.43 16 28 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 29 H 0.03 0.43 7.77 -51.93 -0.40 0.03 16 30 H 0.08 0.92 5.17 -51.93 -0.27 0.65 16 31 H 0.04 0.48 7.81 -51.93 -0.41 0.07 16 32 H 0.09 1.22 7.84 -51.93 -0.41 0.81 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.59 8.14 -51.92 -0.42 0.16 16 35 H 0.07 0.62 7.69 -51.93 -0.40 0.22 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.06 0.72 5.82 -51.93 -0.30 0.42 16 40 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.38 2.53 9.12 45.56 0.42 2.94 16 42 H 0.11 1.66 7.94 -52.48 -0.42 1.24 16 43 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 LS Contribution 345.43 15.07 5.21 5.21 Total: -1.00 -31.52 345.43 -8.83 -40.35 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.68 Total: 6.15 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: -2.56 Total: -23.17 kcal Atomic # 7 Polarization: -31.79 SS G_CDS: -0.30 Total: -32.09 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: -0.48 Total: -11.97 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.52 -8.83 -40.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778268353.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.258 kcal (2) G-P(sol) polarization free energy of solvation -31.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.10 seconds