Wall clock time and date at job start Tue Mar 31 2020 07:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86799 * 119.99872 * 2 1 4 4 H 1.48498 * 109.46912 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47307 * 300.00645 * 3 2 1 6 6 H 1.48500 * 109.46658 * 60.00790 * 3 2 1 7 7 C 1.38651 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99854 * 179.97438 * 7 2 1 9 9 O 1.34832 * 120.00112 * 359.97438 * 7 2 1 10 10 C 1.35752 * 116.99897 * 185.05612 * 9 7 2 11 11 C 1.38873 * 120.06869 * 354.46081 * 10 9 7 12 12 C 1.38102 * 119.93127 * 179.97438 * 11 10 9 13 13 C 1.38299 * 120.06800 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.93358 * 179.97438 * 13 12 11 15 15 N 1.46908 * 109.46853 * 89.99575 * 14 13 12 16 16 C 1.48531 * 110.99984 * 287.39471 * 15 14 13 17 17 C 1.54934 * 103.22366 * 200.27882 * 16 15 14 18 18 C 1.54598 * 102.92239 * 37.42212 * 17 16 15 19 19 C 1.47902 * 110.99497 * 170.00103 * 15 14 13 20 20 H 1.08999 * 109.91939 * 26.49355 * 19 15 14 21 21 C 1.53000 * 110.08460 * 265.28695 * 19 15 14 22 22 C 1.53003 * 109.46836 * 65.86065 * 21 19 15 23 23 O 1.42906 * 109.47046 * 180.02562 * 22 21 19 24 24 C 1.38300 * 120.13843 * 0.27044 * 13 12 11 25 25 C 1.38098 * 120.06829 * 359.49614 * 24 13 12 26 26 H 0.96994 * 120.00041 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.03854 * 359.95891 * 11 10 9 28 28 H 1.08000 * 119.96893 * 179.97438 * 12 11 10 29 29 H 1.08995 * 109.47322 * 329.99964 * 14 13 12 30 30 H 1.08999 * 109.47368 * 209.99858 * 14 13 12 31 31 H 1.08993 * 110.67252 * 318.71865 * 16 15 14 32 32 H 1.09000 * 110.66139 * 81.67855 * 16 15 14 33 33 H 1.08994 * 110.73121 * 279.05506 * 17 16 15 34 34 H 1.09013 * 110.72022 * 155.77535 * 17 16 15 35 35 H 1.08999 * 110.30402 * 219.12270 * 18 17 16 36 36 H 1.08997 * 110.30980 * 96.95379 * 18 17 16 37 37 H 1.09002 * 109.47534 * 185.86197 * 21 19 15 38 38 H 1.09003 * 109.47228 * 305.86734 * 21 19 15 39 39 H 1.09002 * 109.47156 * 299.99800 * 22 21 19 40 40 H 1.08993 * 109.47379 * 60.00111 * 22 21 19 41 41 H 0.96696 * 113.99422 * 179.97438 * 23 22 21 42 42 H 1.08006 * 119.96859 * 179.72599 * 24 13 12 43 43 H 1.08002 * 120.03789 * 180.25445 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8907 2.3965 -1.2123 6 1 1.8909 2.3963 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0701 -3.5046 0.1055 11 6 3.4572 -3.4394 0.0919 12 6 4.2025 -4.5970 0.2006 13 6 3.5689 -5.8201 0.3233 14 6 4.3851 -7.0815 0.4410 15 7 4.6587 -7.3572 1.8579 16 6 5.6593 -6.4038 2.4021 17 6 6.1995 -7.1349 3.6568 18 6 6.2415 -8.6126 3.2045 19 6 5.2476 -8.7027 2.0318 20 1 5.7714 -8.9991 1.1230 21 6 4.1503 -9.7186 2.3555 22 6 3.2194 -9.8653 1.1500 23 8 2.1942 -10.8137 1.4525 24 6 2.1876 -5.8888 0.3321 25 6 1.4367 -4.7345 0.2287 26 1 -0.4850 0.8400 0.0004 27 1 3.9527 -2.4846 -0.0037 28 1 5.2813 -4.5471 0.1897 29 1 5.3269 -6.9559 -0.0931 30 1 3.8308 -7.9147 0.0092 31 1 6.4594 -6.2330 1.6820 32 1 5.1836 -5.4624 2.6771 33 1 5.5199 -7.0085 4.4994 34 1 7.1989 -6.7802 3.9094 35 1 5.9269 -9.2662 4.0181 36 1 7.2448 -8.8779 2.8714 37 1 4.6039 -10.6831 2.5837 38 1 3.5779 -9.3733 3.2165 39 1 2.7658 -8.9008 0.9218 40 1 3.7916 -10.2105 0.2890 41 1 1.5659 -10.9569 0.7316 42 1 1.6956 -6.8460 0.4236 43 1 0.3581 -4.7883 0.2397 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778268353.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:21 Heat of formation + Delta-G solvation = -75.041635 kcal Electronic energy + Delta-G solvation = -23155.019566 eV Core-core repulsion = 19778.609556 eV Total energy + Delta-G solvation = -3376.410010 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.98612 -40.20265 -38.22675 -37.58685 -34.46235 -33.60429 -33.04012 -31.77025 -30.29568 -28.07055 -27.51250 -25.92688 -23.76385 -23.34737 -22.09394 -21.65912 -21.07185 -19.82837 -18.80889 -18.20101 -17.20772 -16.56640 -16.46214 -16.31081 -16.08002 -15.73812 -15.48230 -15.12025 -14.88900 -14.74843 -14.37157 -14.23997 -13.97098 -13.60720 -13.46492 -13.10748 -13.00077 -12.83253 -12.48135 -12.44613 -12.31663 -12.11962 -12.06843 -11.98246 -11.83956 -11.41487 -11.38733 -11.16048 -10.80026 -10.72280 -9.76830 -9.33260 -8.88732 -8.47288 -6.15481 0.60916 0.68614 1.34477 1.42898 1.52913 2.17358 2.75336 3.04646 3.30670 3.34850 3.52947 3.74973 3.87533 4.01315 4.06431 4.14391 4.20597 4.25131 4.35878 4.43139 4.45006 4.50752 4.61078 4.66528 4.72013 4.75984 4.80168 4.93774 5.02427 5.05410 5.09467 5.14022 5.16848 5.23635 5.27950 5.32530 5.40512 5.58546 5.71922 5.79422 6.02950 6.07346 6.15562 6.26474 6.92328 6.97555 7.79084 8.76362 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023028 B = 0.003417 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.626777 B = 8192.454277 C = 9054.736666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.251 1.251 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.413 4.413 8 H 0.101 0.899 9 O -0.234 6.234 10 C 0.113 3.887 11 C -0.241 4.241 12 C -0.060 4.060 13 C -0.149 4.149 14 C 0.100 3.900 15 N -0.522 5.522 16 C 0.035 3.965 17 C -0.121 4.121 18 C -0.120 4.120 19 C 0.068 3.932 20 H 0.064 0.936 21 C -0.099 4.099 22 C 0.069 3.931 23 O -0.597 6.597 24 C -0.049 4.049 25 C -0.205 4.205 26 H 0.272 0.728 27 H 0.117 0.883 28 H 0.134 0.866 29 H 0.050 0.950 30 H 0.094 0.906 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.051 0.949 40 H 0.054 0.946 41 H 0.395 0.605 42 H 0.140 0.860 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.429 -18.555 2.881 23.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.175 1.175 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.489 4.489 8 H 0.118 0.882 9 O -0.141 6.141 10 C 0.063 3.937 11 C -0.261 4.261 12 C -0.078 4.078 13 C -0.150 4.150 14 C -0.027 4.027 15 N -0.246 5.246 16 C -0.093 4.093 17 C -0.159 4.159 18 C -0.158 4.158 19 C -0.040 4.040 20 H 0.082 0.918 21 C -0.137 4.137 22 C -0.009 4.009 23 O -0.405 6.405 24 C -0.068 4.068 25 C -0.225 4.225 26 H 0.081 0.919 27 H 0.134 0.866 28 H 0.151 0.849 29 H 0.069 0.931 30 H 0.112 0.888 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.244 0.756 42 H 0.158 0.842 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 13.853 -18.382 3.683 23.310 hybrid contribution 0.109 1.217 -1.059 1.617 sum 13.962 -17.165 2.624 22.281 Atomic orbital electron populations 1.70193 1.08041 1.28711 1.49044 1.26594 0.96854 1.02739 0.95902 0.84526 0.78235 0.74836 0.78582 1.17455 1.19274 1.19360 1.21856 0.92484 0.81470 1.53093 0.88164 1.83943 1.35997 1.12619 1.81540 1.19921 0.91629 0.87897 0.94242 1.21206 0.93032 0.99933 1.11891 1.20888 0.99394 0.91039 0.96528 1.19538 0.93468 0.94688 1.07305 1.21152 0.97992 0.94637 0.88910 1.64669 1.41270 1.02306 1.16384 1.23217 0.93222 0.96239 0.96603 1.22464 1.01446 0.94995 0.96972 1.22430 0.99049 0.96903 0.97462 1.22350 0.93889 0.88957 0.98787 0.91784 1.21488 0.95929 0.98381 0.97910 1.22453 0.89352 0.91516 0.97533 1.86408 1.43698 1.64116 1.46289 1.20776 0.93422 0.96553 0.96006 1.20445 0.99840 0.90689 1.11496 0.91858 0.86551 0.84865 0.93146 0.88815 0.92987 0.92072 0.91786 0.89637 0.90341 0.89772 0.90446 0.92391 0.93107 0.92767 0.75615 0.84184 0.87163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.24 13.67 21.61 0.30 -56.94 16 2 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 3 Si 1.02 43.25 29.55 68.60 2.03 45.28 16 4 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.41 -24.39 9.49 67.92 0.64 -23.74 16 8 H 0.10 5.44 5.20 -2.91 -0.02 5.43 16 9 O -0.23 -14.37 9.76 -22.78 -0.22 -14.59 16 10 C 0.11 5.75 6.65 22.58 0.15 5.90 16 11 C -0.24 -10.61 9.17 22.39 0.21 -10.41 16 12 C -0.06 -2.06 8.81 22.25 0.20 -1.86 16 13 C -0.15 -4.61 5.16 -19.83 -0.10 -4.72 16 14 C 0.10 2.26 4.39 85.56 0.38 2.64 16 15 N -0.52 -11.50 4.70 -862.62 -4.06 -15.55 16 16 C 0.03 0.74 5.68 86.65 0.49 1.24 16 17 C -0.12 -2.04 7.06 31.80 0.22 -1.82 16 18 C -0.12 -1.72 6.57 31.47 0.21 -1.51 16 19 C 0.07 1.16 2.60 45.06 0.12 1.27 16 20 H 0.06 0.95 7.77 -2.39 -0.02 0.93 16 21 C -0.10 -1.80 5.05 30.60 0.15 -1.64 16 22 C 0.07 1.23 5.90 71.98 0.42 1.65 16 23 O -0.60 -11.62 13.66 -148.98 -2.04 -13.65 16 24 C -0.05 -1.68 9.69 22.25 0.22 -1.47 16 25 C -0.21 -8.96 9.99 22.39 0.22 -8.74 16 26 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 27 H 0.12 5.22 5.64 -2.91 -0.02 5.21 16 28 H 0.13 3.73 8.06 -2.91 -0.02 3.70 16 29 H 0.05 1.02 7.77 -2.39 -0.02 1.00 16 30 H 0.09 1.84 5.17 -2.39 -0.01 1.83 16 31 H 0.05 1.00 7.81 -2.39 -0.02 0.98 16 32 H 0.06 1.62 7.84 -2.39 -0.02 1.60 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.08 1.06 7.69 -2.39 -0.02 1.04 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16 39 H 0.05 1.01 5.82 -2.39 -0.01 0.99 16 40 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.39 4.31 9.12 -74.06 -0.68 3.64 16 42 H 0.14 3.90 7.94 -2.91 -0.02 3.88 16 43 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -73.24 345.43 0.34 -72.90 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 0.34 Total: 26.67 kcal Atomic # 6 Polarization: -48.10 SS G_CDS: 3.99 Total: -44.11 kcal Atomic # 7 Polarization: -68.74 SS G_CDS: -3.76 Total: -72.50 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -2.26 Total: -28.24 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -73.24 0.34 -72.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778268353.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.146 kcal (2) G-P(sol) polarization free energy of solvation -73.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds