Wall clock time and date at job start Tue Mar 31 2020 07:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86802 * 120.00244 * 2 1 4 4 H 1.48497 * 109.47321 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46738 * 299.99607 * 3 2 1 6 6 H 1.48499 * 109.47395 * 59.99477 * 3 2 1 7 7 C 1.38651 * 119.99855 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00155 * 179.97438 * 7 2 1 9 9 O 1.34824 * 120.00217 * 0.02562 * 7 2 1 10 10 C 1.35754 * 117.00058 * 185.44083 * 9 7 2 11 11 C 1.38876 * 120.07100 * 5.80859 * 10 9 7 12 12 C 1.38096 * 119.93093 * 180.02562 * 11 10 9 13 13 C 1.38305 * 120.06991 * 359.97438 * 12 11 10 14 14 C 1.50696 * 119.92815 * 180.02562 * 13 12 11 15 15 N 1.46903 * 109.47518 * 85.47656 * 14 13 12 16 16 C 1.47839 * 110.99975 * 295.70471 * 15 14 13 17 17 C 1.54911 * 104.89351 * 213.57555 * 16 15 14 18 18 C 1.55433 * 101.51923 * 37.06325 * 17 16 15 19 19 C 1.47437 * 111.00376 * 174.85473 * 15 14 13 20 20 H 1.09003 * 109.89248 * 242.66522 * 19 15 14 21 21 C 1.52999 * 109.88960 * 3.69175 * 19 15 14 22 22 C 1.52998 * 109.47308 * 182.68675 * 21 19 15 23 23 O 1.42907 * 109.47048 * 184.96228 * 22 21 19 24 24 C 1.38293 * 120.13758 * 0.28909 * 13 12 11 25 25 C 1.38098 * 120.07096 * 359.46196 * 24 13 12 26 26 H 0.97005 * 119.99997 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.03343 * 359.97438 * 11 10 9 28 28 H 1.08001 * 119.96565 * 179.97438 * 12 11 10 29 29 H 1.09000 * 109.47668 * 325.47494 * 14 13 12 30 30 H 1.09001 * 109.47158 * 205.47506 * 14 13 12 31 31 H 1.08999 * 110.37558 * 332.46184 * 16 15 14 32 32 H 1.09001 * 110.37606 * 94.69397 * 16 15 14 33 33 H 1.08995 * 110.99125 * 155.21451 * 17 16 15 34 34 H 1.08996 * 110.99018 * 279.03361 * 17 16 15 35 35 H 1.08998 * 110.69531 * 205.97762 * 18 17 16 36 36 H 1.09002 * 110.69056 * 82.75716 * 18 17 16 37 37 H 1.08999 * 109.47497 * 302.68888 * 21 19 15 38 38 H 1.09005 * 109.46859 * 62.68553 * 21 19 15 39 39 H 1.08998 * 109.47141 * 304.95697 * 22 21 19 40 40 H 1.08999 * 109.47518 * 64.96069 * 22 21 19 41 41 H 0.96700 * 113.99512 * 179.97438 * 23 22 21 42 42 H 1.07997 * 119.96591 * 179.70343 * 24 13 12 43 43 H 1.08003 * 120.04298 * 180.26798 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3464 -0.0006 5 1 1.8909 2.3963 -1.2126 6 1 1.8909 2.3965 1.2124 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3347 -2.3684 0.0005 10 6 2.0693 -3.5042 0.1158 11 6 3.4364 -3.4281 0.3476 12 6 4.1810 -4.5853 0.4638 13 6 3.5665 -5.8191 0.3501 14 6 4.3820 -7.0799 0.4780 15 7 4.5068 -7.4406 1.8965 16 6 5.2644 -6.4117 2.6402 17 6 6.0421 -7.1968 3.7257 18 6 6.4212 -8.4944 2.9586 19 6 5.1943 -8.7353 2.0541 20 1 4.5244 -9.4565 2.5223 21 6 5.6450 -9.2550 0.6874 22 6 6.2972 -10.6290 0.8540 23 8 6.8210 -11.0631 -0.4028 24 6 2.2062 -5.8981 0.1138 25 6 1.4552 -4.7447 0.0017 26 1 -0.4850 0.8401 -0.0004 27 1 3.9169 -2.4650 0.4361 28 1 5.2443 -4.5268 0.6437 29 1 5.3736 -6.9157 0.0563 30 1 3.8877 -7.8886 -0.0604 31 1 5.9572 -5.8960 1.9753 32 1 4.5821 -5.6988 3.1032 33 1 6.9325 -6.6519 4.0392 34 1 5.4024 -7.4206 4.5794 35 1 6.5586 -9.3250 3.6509 36 1 7.3179 -8.3390 2.3585 37 1 4.7812 -9.3404 0.0282 38 1 6.3653 -8.5610 0.2543 39 1 7.1065 -10.5613 1.5810 40 1 5.5531 -11.3444 1.2041 41 1 7.2505 -11.9289 -0.3719 42 1 1.7300 -6.8630 0.0207 43 1 0.3921 -4.8070 -0.1785 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778268354.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:32 Heat of formation + Delta-G solvation = -71.853817 kcal Electronic energy + Delta-G solvation = -22972.395832 eV Core-core repulsion = 19596.124056 eV Total energy + Delta-G solvation = -3376.271776 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.12050 -40.34204 -38.27009 -37.58905 -34.44161 -33.53817 -33.17057 -31.78051 -30.29591 -27.91212 -27.49727 -25.87340 -23.89523 -23.66757 -22.38947 -21.82435 -20.27497 -19.83222 -18.76750 -18.24032 -17.30208 -16.64372 -16.47093 -16.27618 -16.26971 -15.75545 -15.49431 -15.23745 -15.12399 -14.44724 -14.37073 -14.23760 -13.94815 -13.70644 -13.44991 -13.33995 -12.98259 -12.93230 -12.58636 -12.33364 -12.11506 -12.09466 -11.98579 -11.87817 -11.86861 -11.59500 -11.55878 -11.17716 -10.81167 -10.78316 -9.76989 -9.23780 -8.86401 -8.47697 -6.15639 0.60234 0.68101 1.34209 1.42615 1.52691 2.17187 2.74963 3.03069 3.22203 3.42476 3.51660 3.68286 3.83784 4.00362 4.03936 4.09840 4.15334 4.26947 4.30113 4.38330 4.43392 4.53749 4.57361 4.64021 4.68476 4.77167 4.80105 4.85053 4.96501 5.04242 5.07925 5.12531 5.13982 5.18611 5.24578 5.32419 5.43423 5.57342 5.71455 5.80720 6.02503 6.11761 6.14973 6.25734 6.93370 6.97188 7.78700 8.76064 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028288 B = 0.003031 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.570629 B = 9235.708719 C = 9626.376978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.252 1.252 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.412 4.412 8 H 0.100 0.900 9 O -0.233 6.233 10 C 0.114 3.886 11 C -0.241 4.241 12 C -0.062 4.062 13 C -0.154 4.154 14 C 0.110 3.890 15 N -0.530 5.530 16 C 0.040 3.960 17 C -0.126 4.126 18 C -0.131 4.131 19 C 0.077 3.923 20 H 0.092 0.908 21 C -0.136 4.136 22 C 0.079 3.921 23 O -0.600 6.600 24 C -0.051 4.051 25 C -0.204 4.204 26 H 0.273 0.727 27 H 0.117 0.883 28 H 0.130 0.870 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.397 0.603 42 H 0.144 0.856 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.333 -20.537 5.346 26.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.175 1.175 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.488 4.488 8 H 0.117 0.883 9 O -0.140 6.140 10 C 0.064 3.936 11 C -0.260 4.260 12 C -0.080 4.080 13 C -0.155 4.155 14 C -0.017 4.017 15 N -0.254 5.254 16 C -0.088 4.088 17 C -0.164 4.164 18 C -0.170 4.170 19 C -0.031 4.031 20 H 0.110 0.890 21 C -0.175 4.175 22 C 0.001 3.999 23 O -0.408 6.408 24 C -0.069 4.069 25 C -0.224 4.224 26 H 0.082 0.918 27 H 0.134 0.866 28 H 0.148 0.852 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.247 0.753 42 H 0.162 0.838 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 15.181 -19.841 5.326 25.544 hybrid contribution 0.733 0.784 -0.269 1.106 sum 15.914 -19.057 5.057 25.338 Atomic orbital electron populations 1.70193 1.08035 1.28729 1.49019 1.26593 0.96860 1.02737 0.95900 0.84528 0.78205 0.74834 0.78614 1.17519 1.19280 1.19263 1.21826 0.92407 0.81496 1.53063 0.88308 1.83951 1.35899 1.12625 1.81510 1.19923 0.91618 0.87886 0.94190 1.21200 0.93667 0.99755 1.11387 1.20891 0.99231 0.91145 0.96743 1.19632 0.94214 0.94484 1.07181 1.21053 0.97370 0.93839 0.89450 1.63759 1.49018 1.02442 1.10213 1.23067 0.95334 0.94728 0.95677 1.22746 1.00058 0.96120 0.97473 1.22945 0.97117 0.98477 0.98419 1.22427 0.94751 0.91340 0.94589 0.89008 1.22112 1.00858 0.96704 0.97790 1.22172 0.97482 0.95027 0.85205 1.86442 1.78927 1.41992 1.33475 1.20836 0.93233 0.96837 0.96031 1.20454 1.00275 0.90307 1.11319 0.91829 0.86553 0.85175 0.93713 0.89066 0.93744 0.92385 0.89743 0.90651 0.88807 0.91062 0.91213 0.92165 0.92095 0.92355 0.75289 0.83797 0.86916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.51 13.67 21.61 0.30 -57.22 16 2 C -0.02 -1.37 5.49 84.83 0.47 -0.90 16 3 Si 1.02 43.58 29.55 68.60 2.03 45.61 16 4 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 6 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.41 -24.51 9.44 67.92 0.64 -23.87 16 8 H 0.10 5.43 5.30 -2.91 -0.02 5.42 16 9 O -0.23 -14.41 9.76 -22.72 -0.22 -14.63 16 10 C 0.11 5.88 6.65 22.58 0.15 6.03 16 11 C -0.24 -10.87 9.13 22.39 0.20 -10.66 16 12 C -0.06 -2.22 8.64 22.25 0.19 -2.03 16 13 C -0.15 -5.07 5.09 -19.84 -0.10 -5.17 16 14 C 0.11 2.77 3.86 85.56 0.33 3.10 16 15 N -0.53 -12.41 5.19 -865.08 -4.49 -16.90 16 16 C 0.04 0.92 5.33 86.78 0.46 1.38 16 17 C -0.13 -2.09 7.10 32.08 0.23 -1.86 16 18 C -0.13 -1.78 5.43 31.88 0.17 -1.60 16 19 C 0.08 1.30 3.48 45.26 0.16 1.46 16 20 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 21 C -0.14 -2.28 3.74 30.59 0.11 -2.17 16 22 C 0.08 1.00 6.95 71.98 0.50 1.50 16 23 O -0.60 -9.14 13.66 -148.98 -2.04 -11.18 16 24 C -0.05 -1.81 9.67 22.25 0.22 -1.60 16 25 C -0.20 -9.07 9.99 22.39 0.22 -8.85 16 26 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 27 H 0.12 5.35 5.72 -2.91 -0.02 5.34 16 28 H 0.13 3.93 6.92 -2.91 -0.02 3.91 16 29 H 0.04 1.08 6.74 -2.39 -0.02 1.07 16 30 H 0.09 2.11 6.21 -2.39 -0.01 2.09 16 31 H 0.04 1.03 6.43 -2.39 -0.02 1.02 16 32 H 0.06 1.62 8.14 -2.39 -0.02 1.61 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.07 0.95 7.80 -2.39 -0.02 0.93 16 37 H 0.07 1.31 6.28 -2.39 -0.01 1.30 16 38 H 0.06 1.16 6.96 -2.38 -0.02 1.14 16 39 H 0.06 0.58 7.24 -2.39 -0.02 0.57 16 40 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.40 2.22 9.12 -74.06 -0.68 1.54 16 42 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 43 H 0.11 4.95 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -74.17 341.13 -0.12 -74.29 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: 0.35 Total: 25.29 kcal Atomic # 6 Polarization: -49.21 SS G_CDS: 3.96 Total: -45.26 kcal Atomic # 7 Polarization: -69.93 SS G_CDS: -4.19 Total: -74.12 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -2.26 Total: -25.81 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -74.17 -0.12 -74.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778268354.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.434 kcal (2) G-P(sol) polarization free energy of solvation -74.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds