Wall clock time and date at job start Tue Mar 31 2020 06:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53009 * 109.47000 * 2 1 4 4 C 1.52999 * 109.47059 * 240.00169 * 2 1 3 5 5 N 1.46497 * 109.47260 * 119.99684 * 2 1 3 6 6 N 1.40048 * 125.87012 * 240.00055 * 5 2 1 7 7 C 1.30222 * 109.71974 * 179.97438 * 6 5 2 8 8 C 1.41260 * 108.47325 * 0.02562 * 7 6 5 9 9 C 1.36335 * 125.86512 * 60.00376 * 5 2 1 10 10 N 1.33124 * 134.54762 * 0.30198 * 9 5 2 11 11 C 1.32207 * 120.57796 * 180.17030 * 10 9 5 12 12 N 1.38384 * 118.79865 * 179.76262 * 11 10 9 13 13 C 1.46499 * 120.00090 * 179.73093 * 12 11 10 14 14 C 1.50701 * 109.46992 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47294 * 60.00559 * 18 16 14 20 20 H 1.48503 * 109.46954 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47431 * 300.00157 * 18 16 14 22 22 N 1.32827 * 122.41054 * 359.48222 * 11 10 9 23 23 C 1.32554 * 121.16133 * 0.25545 * 22 11 10 24 24 O 1.35357 * 120.73249 * 179.97438 * 23 22 11 25 25 H 1.08995 * 109.46923 * 300.00441 * 1 2 3 26 26 H 1.08997 * 109.46808 * 60.00144 * 1 2 3 27 27 H 1.08998 * 109.46538 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47174 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46607 * 299.99918 * 3 2 1 30 30 H 1.08991 * 109.47158 * 59.99953 * 3 2 1 31 31 H 1.08997 * 109.47193 * 299.99870 * 4 2 1 32 32 H 1.08997 * 109.47566 * 60.00151 * 4 2 1 33 33 H 1.09006 * 109.47178 * 179.97438 * 4 2 1 34 34 H 1.08001 * 125.76379 * 180.02562 * 7 6 5 35 35 H 0.97000 * 119.99489 * 359.72281 * 12 11 10 36 36 H 1.09002 * 109.47391 * 59.99630 * 13 12 11 37 37 H 1.09001 * 109.46813 * 299.99687 * 13 12 11 38 38 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 39 39 H 0.96706 * 114.00459 * 89.99642 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6905 1.1962 6 7 2.8269 -0.1316 2.1938 7 6 3.0727 -1.0228 3.1108 8 6 2.4266 -2.2261 2.7501 9 6 1.7639 -1.9878 1.5295 10 7 1.0754 -2.9786 0.9670 11 6 1.0061 -4.1640 1.5483 12 7 0.2761 -5.1662 0.9338 13 6 0.1866 -6.4915 1.5518 14 6 -0.6600 -7.3918 0.6894 15 1 -1.0882 -7.0147 -0.2276 16 6 -0.8871 -8.6973 1.0705 17 7 -0.3653 -9.1566 2.1868 18 14 -1.9359 -9.8134 0.0010 19 1 -1.3174 -9.9347 -1.3436 20 1 -2.0267 -11.1567 0.6276 21 1 -3.2977 -9.2361 -0.1307 22 7 1.6160 -4.4299 2.6979 23 6 2.3279 -3.5053 3.3266 24 8 2.9455 -3.7856 4.4980 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 -1.7489 -1.2493 32 1 1.6768 -0.2074 -2.1392 33 1 3.1301 -0.7208 -1.2495 34 1 3.6697 -0.8682 3.9974 35 1 -0.1765 -4.9912 0.0939 36 1 -0.2675 -6.4023 2.5387 37 1 1.1861 -6.9154 1.6487 38 1 -0.5254 -10.0749 2.4551 39 1 3.8463 -4.1224 4.3971 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784611674.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:24 Heat of formation + Delta-G solvation = 79.196127 kcal Electronic energy + Delta-G solvation = -23175.653431 eV Core-core repulsion = 19734.684080 eV Total energy + Delta-G solvation = -3440.969351 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.73588 -39.17920 -37.53621 -36.61953 -34.76427 -32.55532 -32.47866 -30.14075 -29.38906 -27.47762 -27.45176 -26.83636 -23.79928 -23.30522 -22.21238 -21.57110 -19.68551 -18.67707 -17.63188 -16.99807 -16.65960 -15.93429 -15.39392 -15.31889 -14.77475 -14.67343 -14.39600 -14.08580 -13.64637 -13.41097 -13.38143 -12.45206 -12.40840 -12.34152 -12.10150 -11.98775 -11.81060 -11.70918 -11.42142 -11.32917 -11.09810 -10.93184 -10.92594 -10.53618 -10.31931 -10.17436 -9.46558 -9.45430 -8.73100 -8.62352 -8.54293 -7.27493 -6.20613 -4.27551 1.00163 1.76087 2.19025 2.65967 3.24355 3.28939 3.30156 3.44921 3.82309 4.23973 4.26393 4.31957 4.71342 4.77074 4.80657 4.95294 5.02379 5.16025 5.28362 5.37346 5.43908 5.44391 5.60689 5.62292 5.70809 5.74242 5.93749 6.10445 6.15864 6.16675 6.53489 6.87493 7.10698 7.40203 7.45338 7.52973 7.58844 7.68128 7.79899 7.90866 8.40771 8.69248 8.98671 9.38404 10.89273 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020245 B = 0.004059 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.712497 B = 6895.916487 C = 8079.718316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.195 3.805 3 C -0.140 4.140 4 C -0.162 4.162 5 N -0.382 5.382 6 N -0.269 5.269 7 C 0.117 3.883 8 C -0.367 4.367 9 C 0.407 3.593 10 N -0.613 5.613 11 C 0.625 3.375 12 N -0.660 5.660 13 C 0.262 3.738 14 C -0.547 4.547 15 H 0.064 0.936 16 C 0.067 3.933 17 N -0.884 5.884 18 Si 0.905 3.095 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 N -0.586 5.586 23 C 0.481 3.519 24 O -0.475 6.475 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.192 0.808 35 H 0.409 0.591 36 H 0.032 0.968 37 H 0.032 0.968 38 H 0.267 0.733 39 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.054 17.617 -2.114 19.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.113 3.887 3 C -0.197 4.197 4 C -0.220 4.220 5 N -0.175 5.175 6 N -0.082 5.082 7 C -0.081 4.081 8 C -0.385 4.385 9 C 0.157 3.843 10 N -0.351 5.351 11 C 0.265 3.735 12 N -0.290 5.290 13 C 0.141 3.859 14 C -0.585 4.585 15 H 0.082 0.918 16 C -0.137 4.137 17 N -0.521 5.521 18 Si 0.732 3.268 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.200 1.200 22 N -0.320 5.320 23 C 0.279 3.721 24 O -0.282 6.282 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.208 0.792 35 H 0.245 0.755 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 6.132 17.957 -2.642 19.158 hybrid contribution 0.017 -1.064 -0.195 1.082 sum 6.149 16.893 -2.837 18.200 Atomic orbital electron populations 1.22254 0.93102 1.04265 1.02448 1.20586 0.94269 0.92625 0.81264 1.21885 1.02196 0.93078 1.02574 1.22250 1.01543 1.02462 0.95767 1.48550 1.43606 1.05404 1.19948 1.76815 1.10842 1.21792 0.98703 1.23552 0.97613 0.89047 0.97892 1.19942 1.17311 0.98510 1.02748 1.18499 0.89974 0.86717 0.89111 1.66963 1.30203 0.99550 1.38339 1.18877 0.85803 0.84863 0.83990 1.45285 1.48400 1.10418 1.24891 1.19238 0.97766 0.74937 0.93944 1.21169 1.32847 0.96329 1.08192 0.91833 1.24903 0.95815 0.97750 0.95273 1.69957 1.43532 1.16646 1.21968 0.86457 0.80598 0.79480 0.80289 1.20031 1.21027 1.20027 1.67531 1.17201 1.36211 1.11022 1.18571 0.86047 0.85416 0.82027 1.84595 1.33036 1.86424 1.24170 0.92303 0.90703 0.90338 0.91534 0.91147 0.91527 0.90302 0.90722 0.92323 0.79157 0.75473 0.95003 0.95041 0.92329 0.73115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 8.52 37.16 0.32 -1.57 16 2 C 0.19 2.35 1.21 -131.81 -0.16 2.19 16 3 C -0.14 -1.35 7.97 37.16 0.30 -1.06 16 4 C -0.16 -1.84 8.52 37.16 0.32 -1.52 16 5 N -0.38 -5.69 3.49 -47.77 -0.17 -5.86 16 6 N -0.27 -3.79 11.50 30.82 0.35 -3.44 16 7 C 0.12 1.53 12.05 -17.09 -0.21 1.32 16 8 C -0.37 -5.93 6.19 -106.82 -0.66 -6.59 16 9 C 0.41 7.04 7.11 -156.25 -1.11 5.93 16 10 N -0.61 -11.52 9.38 -13.31 -0.12 -11.65 16 11 C 0.62 12.97 8.41 -322.78 -2.71 10.26 16 12 N -0.66 -14.32 5.70 -63.48 -0.36 -14.68 16 13 C 0.26 6.70 5.38 -5.19 -0.03 6.67 16 14 C -0.55 -14.60 9.28 -34.44 -0.32 -14.92 16 15 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 16 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 17 N -0.88 -25.35 13.29 55.43 0.74 -24.61 16 18 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 22 N -0.59 -12.14 9.55 -13.73 -0.13 -12.27 16 23 C 0.48 8.24 7.89 -16.33 -0.13 8.11 16 24 O -0.47 -6.47 13.58 -17.76 -0.24 -6.72 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.08 1.09 7.43 -51.93 -0.39 0.70 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 1.07 7.41 -51.93 -0.38 0.69 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.19 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.41 8.17 8.43 -40.82 -0.34 7.83 16 36 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.27 7.21 8.31 -40.82 -0.34 6.88 16 39 H 0.41 3.29 9.06 45.56 0.41 3.71 16 LS Contribution 334.90 15.07 5.05 5.05 Total: -1.00 -31.92 334.90 -8.87 -40.78 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -4.46 Total: 7.24 kcal Atomic # 6 Polarization: 15.03 SS G_CDS: -4.50 Total: 10.54 kcal Atomic # 7 Polarization: -72.81 SS G_CDS: 0.31 Total: -72.50 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.24 Total: -6.72 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.92 -8.87 -40.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784611674.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.980 kcal (2) G-P(sol) polarization free energy of solvation -31.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds