Wall clock time and date at job start Tue Mar 31 2020 06:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53009 * 109.47000 * 2 1 4 4 C 1.52999 * 109.47059 * 240.00169 * 2 1 3 5 5 N 1.46497 * 109.47260 * 119.99684 * 2 1 3 6 6 N 1.40048 * 125.87012 * 240.00055 * 5 2 1 7 7 C 1.30222 * 109.71974 * 179.97438 * 6 5 2 8 8 C 1.41260 * 108.47325 * 0.02562 * 7 6 5 9 9 C 1.36335 * 125.86512 * 60.00376 * 5 2 1 10 10 N 1.33124 * 134.54762 * 0.30198 * 9 5 2 11 11 C 1.32207 * 120.57796 * 180.17030 * 10 9 5 12 12 N 1.38384 * 118.79865 * 179.76262 * 11 10 9 13 13 C 1.46499 * 120.00090 * 179.73093 * 12 11 10 14 14 C 1.50701 * 109.46992 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47294 * 60.00559 * 18 16 14 20 20 H 1.48503 * 109.46954 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47431 * 300.00157 * 18 16 14 22 22 N 1.32827 * 122.41054 * 359.48222 * 11 10 9 23 23 C 1.32554 * 121.16133 * 0.25545 * 22 11 10 24 24 O 1.35357 * 120.73249 * 179.97438 * 23 22 11 25 25 H 1.08995 * 109.46923 * 300.00441 * 1 2 3 26 26 H 1.08997 * 109.46808 * 60.00144 * 1 2 3 27 27 H 1.08998 * 109.46538 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47174 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46607 * 299.99918 * 3 2 1 30 30 H 1.08991 * 109.47158 * 59.99953 * 3 2 1 31 31 H 1.08997 * 109.47193 * 299.99870 * 4 2 1 32 32 H 1.08997 * 109.47566 * 60.00151 * 4 2 1 33 33 H 1.09006 * 109.47178 * 179.97438 * 4 2 1 34 34 H 1.08001 * 125.76379 * 180.02562 * 7 6 5 35 35 H 0.97000 * 119.99489 * 359.72281 * 12 11 10 36 36 H 1.09002 * 109.47391 * 59.99630 * 13 12 11 37 37 H 1.09001 * 109.46813 * 299.99687 * 13 12 11 38 38 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 39 39 H 0.96706 * 114.00459 * 89.99642 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6905 1.1962 6 7 2.8269 -0.1316 2.1938 7 6 3.0727 -1.0228 3.1108 8 6 2.4266 -2.2261 2.7501 9 6 1.7639 -1.9878 1.5295 10 7 1.0754 -2.9786 0.9670 11 6 1.0061 -4.1640 1.5483 12 7 0.2761 -5.1662 0.9338 13 6 0.1866 -6.4915 1.5518 14 6 -0.6600 -7.3918 0.6894 15 1 -1.0882 -7.0147 -0.2276 16 6 -0.8871 -8.6973 1.0705 17 7 -0.3653 -9.1566 2.1868 18 14 -1.9359 -9.8134 0.0010 19 1 -1.3174 -9.9347 -1.3436 20 1 -2.0267 -11.1567 0.6276 21 1 -3.2977 -9.2361 -0.1307 22 7 1.6160 -4.4299 2.6979 23 6 2.3279 -3.5053 3.3266 24 8 2.9455 -3.7856 4.4980 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 -1.7489 -1.2493 32 1 1.6768 -0.2074 -2.1392 33 1 3.1301 -0.7208 -1.2495 34 1 3.6697 -0.8682 3.9974 35 1 -0.1765 -4.9912 0.0939 36 1 -0.2675 -6.4023 2.5387 37 1 1.1861 -6.9154 1.6487 38 1 -0.5254 -10.0749 2.4551 39 1 3.8463 -4.1224 4.3971 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784611674.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:23 Heat of formation + Delta-G solvation = 56.438655 kcal Electronic energy + Delta-G solvation = -23176.640269 eV Core-core repulsion = 19734.684080 eV Total energy + Delta-G solvation = -3441.956189 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.01300 -40.48438 -38.83007 -37.61377 -36.48452 -34.46133 -33.90099 -31.30585 -30.87467 -28.73067 -28.37085 -28.27878 -25.19215 -24.99190 -23.59664 -22.92234 -20.90242 -20.12040 -18.78493 -18.66897 -18.10027 -17.30138 -16.89810 -16.69511 -16.46477 -15.85906 -15.45653 -15.36107 -15.15439 -14.72499 -14.66950 -14.07298 -13.72950 -13.37525 -13.26830 -13.13710 -12.94121 -12.89006 -12.73093 -12.70504 -12.55763 -12.28501 -12.20008 -12.03640 -11.81797 -11.52973 -11.44133 -11.04009 -10.55305 -10.16899 -9.82282 -8.85788 -8.27924 -6.43277 -0.31849 0.36500 1.01985 1.43777 1.46993 1.50371 1.55061 2.03102 2.36934 2.51548 2.81115 3.07202 3.16683 3.56368 3.70793 3.79454 3.80579 3.93673 4.10319 4.19967 4.57235 4.60664 4.72186 4.73784 4.81591 4.86447 4.89560 5.09880 5.12897 5.22740 5.23162 5.31434 5.46297 5.51550 5.62459 5.82748 6.03426 6.12785 6.46791 6.61802 6.64302 6.77170 7.25293 7.44988 8.83381 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020245 B = 0.004059 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.712497 B = 6895.916487 C = 8079.718316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.181 3.819 3 C -0.131 4.131 4 C -0.156 4.156 5 N -0.379 5.379 6 N -0.269 5.269 7 C 0.130 3.870 8 C -0.367 4.367 9 C 0.381 3.619 10 N -0.610 5.610 11 C 0.613 3.387 12 N -0.669 5.669 13 C 0.290 3.710 14 C -0.563 4.563 15 H 0.076 0.924 16 C 0.012 3.988 17 N -0.923 5.923 18 Si 0.979 3.021 19 H -0.264 1.264 20 H -0.282 1.282 21 H -0.266 1.266 22 N -0.629 5.629 23 C 0.485 3.515 24 O -0.471 6.471 25 H 0.052 0.948 26 H 0.105 0.895 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.105 0.895 33 H 0.055 0.945 34 H 0.236 0.764 35 H 0.414 0.586 36 H -0.004 1.004 37 H 0.000 1.000 38 H 0.270 0.730 39 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.423 19.606 -2.994 21.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.100 3.900 3 C -0.188 4.188 4 C -0.214 4.214 5 N -0.171 5.171 6 N -0.081 5.081 7 C -0.068 4.068 8 C -0.385 4.385 9 C 0.131 3.869 10 N -0.347 5.347 11 C 0.253 3.747 12 N -0.302 5.302 13 C 0.168 3.832 14 C -0.600 4.600 15 H 0.094 0.906 16 C -0.188 4.188 17 N -0.561 5.561 18 Si 0.803 3.197 19 H -0.189 1.189 20 H -0.207 1.207 21 H -0.191 1.191 22 N -0.365 5.365 23 C 0.285 3.715 24 O -0.282 6.282 25 H 0.071 0.929 26 H 0.124 0.876 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.123 0.877 33 H 0.074 0.926 34 H 0.252 0.748 35 H 0.251 0.749 36 H 0.014 0.986 37 H 0.018 0.982 38 H 0.078 0.922 39 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 6.565 20.045 -3.516 21.384 hybrid contribution 0.035 -1.476 0.164 1.486 sum 6.599 18.569 -3.352 19.990 Atomic orbital electron populations 1.22225 0.92826 1.02768 1.03721 1.21004 0.94599 0.93934 0.80453 1.21859 1.01941 0.91216 1.03829 1.22215 1.01261 1.01153 0.96803 1.48998 1.42989 1.04487 1.20634 1.76838 1.10610 1.21928 0.98724 1.24218 0.96825 0.87035 0.98699 1.20206 1.16980 0.99054 1.02219 1.18841 0.90462 0.87526 0.90048 1.66918 1.30332 0.99261 1.38233 1.18886 0.86179 0.85278 0.84368 1.44818 1.50322 1.09644 1.25427 1.18575 0.95437 0.76700 0.92528 1.21555 1.32916 0.96889 1.08683 0.90632 1.25904 0.96983 0.99374 0.96542 1.70100 1.45011 1.17172 1.23866 0.85290 0.78852 0.77075 0.78501 1.18918 1.20723 1.19083 1.67508 1.18941 1.38117 1.11905 1.18695 0.85293 0.85300 0.82171 1.84555 1.34727 1.86534 1.22404 0.92852 0.87597 0.93143 0.91816 0.88175 0.91990 0.93059 0.87670 0.92635 0.74761 0.74862 0.98614 0.98165 0.92156 0.70253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 8.52 71.98 0.61 -2.81 16 2 C 0.18 4.04 1.21 3.61 0.00 4.05 16 3 C -0.13 -2.15 7.97 71.99 0.57 -1.58 16 4 C -0.16 -3.31 8.52 71.98 0.61 -2.70 16 5 N -0.38 -10.80 3.49 -305.03 -1.07 -11.87 16 6 N -0.27 -6.95 11.50 -56.41 -0.65 -7.60 16 7 C 0.13 3.04 12.05 85.67 1.03 4.07 16 8 C -0.37 -11.49 6.19 -21.29 -0.13 -11.62 16 9 C 0.38 13.12 7.11 134.18 0.95 14.08 16 10 N -0.61 -23.60 9.38 -196.01 -1.84 -25.44 16 11 C 0.61 26.61 8.41 261.48 2.20 28.81 16 12 N -0.67 -30.62 5.70 -354.76 -2.02 -32.64 16 13 C 0.29 15.71 5.38 85.63 0.46 16.17 16 14 C -0.56 -30.85 9.28 25.60 0.24 -30.62 16 15 H 0.08 3.86 7.60 -2.91 -0.02 3.84 16 16 C 0.01 0.68 5.46 84.66 0.46 1.15 16 17 N -0.92 -54.49 13.29 21.45 0.28 -54.21 16 18 Si 0.98 42.47 29.54 68.60 2.03 44.50 16 19 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 20 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 21 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 22 N -0.63 -27.11 9.55 -310.25 -2.96 -30.07 16 23 C 0.49 16.59 7.89 85.17 0.67 17.26 16 24 O -0.47 -12.33 13.58 -86.48 -1.17 -13.50 16 25 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.05 1.39 7.43 -2.39 -0.02 1.38 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 1.39 7.41 -2.39 -0.02 1.37 16 32 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.24 3.16 8.06 -2.91 -0.02 3.13 16 35 H 0.41 17.38 8.43 -92.71 -0.78 16.60 16 36 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 37 H 0.00 0.02 8.14 -2.39 -0.02 0.01 16 38 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 39 H 0.43 6.31 9.06 -74.05 -0.67 5.64 16 Total: -1.00 -71.96 334.90 -0.07 -72.03 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -0.36 Total: 22.55 kcal Atomic # 6 Polarization: 28.56 SS G_CDS: 7.69 Total: 36.25 kcal Atomic # 7 Polarization: -153.57 SS G_CDS: -8.25 Total: -161.82 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -1.17 Total: -13.50 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -71.96 -0.07 -72.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784611674.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.466 kcal (2) G-P(sol) polarization free energy of solvation -71.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds