Wall clock time and date at job start Tue Mar 31 2020 07:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86803 * 119.99877 * 2 1 4 4 H 1.48495 * 109.47432 * 89.99547 * 3 2 1 5 5 H 1.48498 * 109.46929 * 210.00063 * 3 2 1 6 6 H 1.48504 * 109.46998 * 329.99680 * 3 2 1 7 7 C 1.39938 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99969 * 17.10260 * 7 2 1 9 9 C 1.41393 * 120.00244 * 197.10039 * 7 2 1 10 10 C 1.40730 * 120.24523 * 29.34807 * 9 7 2 11 11 C 1.37598 * 119.75045 * 180.02562 * 10 9 7 12 12 C 1.38655 * 120.24576 * 0.02562 * 11 10 9 13 13 C 1.38613 * 120.50174 * 359.97438 * 12 11 10 14 14 C 1.37640 * 120.24862 * 359.67182 * 13 12 11 15 15 C 1.50700 * 120.13180 * 180.32332 * 14 13 12 16 16 C 1.50701 * 109.46813 * 265.30632 * 15 14 13 17 17 O 1.21280 * 120.00223 * 359.97438 * 16 15 14 18 18 N 1.34784 * 119.99906 * 180.02562 * 16 15 14 19 19 C 1.46501 * 119.99968 * 180.02562 * 18 16 15 20 20 C 1.52995 * 109.46781 * 179.97438 * 19 18 16 21 21 C 1.53006 * 109.46832 * 179.97438 * 20 19 18 22 22 C 1.53005 * 109.46810 * 180.02562 * 21 20 19 23 23 C 1.53006 * 109.46810 * 180.02562 * 22 21 20 24 24 O 1.42901 * 109.46812 * 179.97438 * 23 22 21 25 25 H 0.97004 * 119.99819 * 175.46146 * 1 2 3 26 26 H 1.08003 * 120.12932 * 359.97438 * 10 9 7 27 27 H 1.08002 * 119.87930 * 180.02562 * 11 10 9 28 28 H 1.08001 * 119.75352 * 179.97438 * 12 11 10 29 29 H 1.08005 * 119.87936 * 179.97438 * 13 12 11 30 30 H 1.08999 * 109.46812 * 25.30470 * 15 14 13 31 31 H 1.08998 * 109.47079 * 145.30506 * 15 14 13 32 32 H 0.96998 * 119.99931 * 359.97438 * 18 16 15 33 33 H 1.08998 * 109.46479 * 299.99728 * 19 18 16 34 34 H 1.09002 * 109.47252 * 59.99451 * 19 18 16 35 35 H 1.09001 * 109.47390 * 299.99737 * 20 19 18 36 36 H 1.09002 * 109.47570 * 59.99775 * 20 19 18 37 37 H 1.08999 * 109.47265 * 299.99623 * 21 20 19 38 38 H 1.08998 * 109.47322 * 60.00085 * 21 20 19 39 39 H 1.09004 * 109.46861 * 299.99092 * 22 21 20 40 40 H 1.08998 * 109.47140 * 59.99935 * 22 21 20 41 41 H 1.09001 * 109.47059 * 300.00073 * 23 22 21 42 42 H 1.09002 * 109.47087 * 59.99612 * 23 22 21 43 43 H 0.96700 * 113.99614 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4896 2.0466 1.4000 5 1 3.5397 1.4402 -0.7000 6 1 1.4396 2.6527 -0.7001 7 6 2.0080 -1.2119 0.0005 8 1 1.5038 -2.1266 -0.2741 9 6 3.3750 -1.2388 0.3606 10 6 3.8884 -0.2916 1.2660 11 6 5.2205 -0.3268 1.6089 12 6 6.0563 -1.2905 1.0655 13 6 5.5616 -2.2284 0.1728 14 6 4.2309 -2.2166 -0.1789 15 6 3.6944 -3.2420 -1.1441 16 6 3.7033 -2.6718 -2.5390 17 8 4.1053 -1.5437 -2.7305 18 7 3.2636 -3.4153 -3.5738 19 6 3.2728 -2.8612 -4.9299 20 6 2.7280 -3.9022 -5.9098 21 6 2.7370 -3.3233 -7.3261 22 6 2.1916 -4.3642 -8.3059 23 6 2.2012 -3.7855 -9.7223 24 8 1.6923 -4.7579 -10.6375 25 1 -0.4850 -0.8375 -0.0665 26 1 3.2394 0.4608 1.6895 27 1 5.6165 0.3989 2.3039 28 1 7.1007 -1.3106 1.3399 29 1 6.2217 -2.9744 -0.2447 30 1 4.3205 -4.1337 -1.1120 31 1 2.6739 -3.5044 -0.8653 32 1 2.9418 -4.3174 -3.4206 33 1 2.6474 -1.9690 -4.9620 34 1 4.2936 -2.5995 -5.2086 35 1 3.3538 -4.7941 -5.8775 36 1 1.7073 -4.1643 -5.6313 37 1 2.1110 -2.4316 -7.3581 38 1 3.7576 -3.0610 -7.6049 39 1 2.8174 -5.2561 -8.2741 40 1 1.1710 -4.6261 -8.0269 41 1 1.5758 -2.8933 -9.7545 42 1 3.2220 -3.5239 -10.0010 43 1 1.6690 -4.4584 -11.5567 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791059619.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:44 Heat of formation + Delta-G solvation = -99.262842 kcal Electronic energy + Delta-G solvation = -22493.107089 eV Core-core repulsion = 19115.646769 eV Total energy + Delta-G solvation = -3377.460320 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 3.75 seconds Orbital eigenvalues (eV) -39.25690 -37.77618 -37.48545 -35.84879 -33.64772 -33.61889 -31.87166 -30.15857 -30.03776 -27.13170 -25.25258 -24.34808 -22.03622 -21.44703 -21.32790 -20.33091 -19.21897 -18.04680 -17.63403 -16.39787 -16.34043 -15.81530 -15.35018 -15.11392 -14.68841 -14.45059 -14.15386 -13.78277 -13.62145 -13.20892 -12.90307 -12.67441 -12.46377 -12.17027 -12.04857 -11.83971 -11.68420 -11.26525 -11.22425 -11.20682 -11.15543 -10.83098 -10.73454 -10.32257 -10.25445 -10.10563 -9.65957 -9.22407 -9.15351 -8.92118 -8.65917 -7.61395 -7.54191 -7.13759 -4.45271 2.63338 2.79621 3.29390 3.38454 3.46864 3.58917 3.70678 3.92183 4.13742 4.58857 4.65539 4.72513 4.79838 4.91853 5.05900 5.21413 5.35831 5.37053 5.49271 5.55678 5.63801 5.68799 5.79028 5.85324 5.91513 6.00575 6.09060 6.12278 6.17012 6.25736 6.27144 6.59170 6.79289 6.83932 7.11001 7.24564 7.40567 7.56051 7.71642 7.76062 7.89837 7.98302 8.06269 8.45180 8.65062 8.85771 8.90900 10.11975 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018605 B = 0.003265 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.639498 B = 8572.975360 C = 9445.809214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.047 3.953 3 Si 1.070 2.930 4 H -0.279 1.279 5 H -0.258 1.258 6 H -0.293 1.293 7 C -0.512 4.512 8 H 0.074 0.926 9 C 0.115 3.885 10 C -0.245 4.245 11 C -0.076 4.076 12 C -0.246 4.246 13 C -0.068 4.068 14 C -0.171 4.171 15 C -0.071 4.071 16 C 0.517 3.483 17 O -0.518 6.518 18 N -0.747 5.747 19 C 0.120 3.880 20 C -0.129 4.129 21 C -0.115 4.115 22 C -0.120 4.120 23 C 0.073 3.927 24 O -0.578 6.578 25 H 0.282 0.718 26 H 0.104 0.896 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.395 0.605 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.046 0.954 42 H 0.045 0.955 43 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.615 -8.208 -14.138 16.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.172 4.172 3 Si 0.897 3.103 4 H -0.207 1.207 5 H -0.182 1.182 6 H -0.221 1.221 7 C -0.541 4.541 8 H 0.092 0.908 9 C 0.112 3.888 10 C -0.263 4.263 11 C -0.095 4.095 12 C -0.265 4.265 13 C -0.087 4.087 14 C -0.173 4.173 15 C -0.111 4.111 16 C 0.304 3.696 17 O -0.391 6.391 18 N -0.401 5.401 19 C -0.004 4.004 20 C -0.166 4.166 21 C -0.153 4.153 22 C -0.157 4.157 23 C -0.004 4.004 24 O -0.383 6.383 25 H 0.094 0.906 26 H 0.122 0.878 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.228 0.772 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 3.555 -6.101 -13.680 15.395 hybrid contribution -0.077 -1.831 -0.518 1.905 sum 3.478 -7.932 -14.198 16.631 Atomic orbital electron populations 1.70573 1.08011 1.32669 1.33464 1.27151 0.95548 1.04420 0.90043 0.83642 0.76115 0.73036 0.77473 1.20652 1.18216 1.22085 1.20512 0.94820 0.96345 1.42419 0.90777 1.17517 0.92891 0.89918 0.88516 1.21123 0.95666 1.04866 1.04694 1.20603 0.93887 0.96914 0.98057 1.20329 0.98061 1.01383 1.06717 1.20422 0.94086 0.97387 0.96779 1.19037 0.93317 1.02173 1.02731 1.20264 1.02770 0.97615 0.90419 1.21003 0.76276 0.85821 0.86492 1.90679 1.45005 1.18386 1.85067 1.46095 1.68465 1.18420 1.07132 1.21226 1.01153 0.96536 0.81451 1.21761 1.02006 0.98693 0.94181 1.21411 1.01823 0.98431 0.93620 1.21524 1.02531 0.99192 0.92491 1.22239 0.97394 0.90849 0.89947 1.86475 1.87656 1.43293 1.20880 0.90640 0.87795 0.88886 0.89013 0.89206 0.90541 0.88981 0.77238 0.91781 0.92037 0.91327 0.91180 0.91284 0.91417 0.91227 0.91131 0.93537 0.93621 0.77444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.79 13.65 55.55 0.76 -22.03 16 2 C 0.05 1.28 5.42 -17.34 -0.09 1.19 16 3 Si 1.07 26.37 24.89 -169.99 -4.23 22.14 16 4 H -0.28 -6.45 6.44 56.52 0.36 -6.09 16 5 H -0.26 -6.63 7.02 56.52 0.40 -6.24 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.51 -13.90 8.80 -37.75 -0.33 -14.23 16 8 H 0.07 2.01 6.60 -52.49 -0.35 1.66 16 9 C 0.11 3.00 5.13 -106.82 -0.55 2.45 16 10 C -0.24 -6.20 7.26 -38.87 -0.28 -6.48 16 11 C -0.08 -1.75 10.02 -39.66 -0.40 -2.14 16 12 C -0.25 -5.39 10.05 -39.29 -0.39 -5.79 16 13 C -0.07 -1.51 9.66 -39.66 -0.38 -1.89 16 14 C -0.17 -4.03 4.43 -103.91 -0.46 -4.49 16 15 C -0.07 -1.38 5.36 -29.03 -0.16 -1.53 16 16 C 0.52 10.35 7.82 -10.98 -0.09 10.26 16 17 O -0.52 -12.85 16.03 5.56 0.09 -12.76 16 18 N -0.75 -11.16 5.56 -60.29 -0.33 -11.50 16 19 C 0.12 1.61 5.67 -4.04 -0.02 1.59 16 20 C -0.13 -1.21 5.33 -26.73 -0.14 -1.36 16 21 C -0.11 -0.96 5.21 -26.73 -0.14 -1.10 16 22 C -0.12 -0.99 5.58 -26.73 -0.15 -1.14 16 23 C 0.07 0.56 7.05 37.16 0.26 0.82 16 24 O -0.58 -4.87 13.66 -35.23 -0.48 -5.35 16 25 H 0.28 7.54 8.73 -40.82 -0.36 7.18 16 26 H 0.10 2.61 4.43 -52.48 -0.23 2.38 16 27 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 28 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 29 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 30 H 0.08 1.21 8.05 -51.93 -0.42 0.79 16 31 H 0.09 1.77 6.51 -51.93 -0.34 1.44 16 32 H 0.39 4.58 8.47 -40.82 -0.35 4.23 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.38 1.43 9.12 45.56 0.42 1.84 16 LS Contribution 354.68 15.07 5.35 5.35 Total: -1.00 -33.42 354.68 -8.14 -41.56 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.96 Total: 6.43 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: -3.33 Total: -23.84 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.42 Total: -33.53 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.39 Total: -18.10 kcal Atomic # 14 Polarization: 26.37 SS G_CDS: -4.23 Total: 22.14 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.42 -8.14 -41.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791059619.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.705 kcal (2) G-P(sol) polarization free energy of solvation -33.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.75 seconds