Wall clock time and date at job start Tue Mar 31 2020 07:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86803 * 119.99877 * 2 1 4 4 H 1.48495 * 109.47432 * 89.99547 * 3 2 1 5 5 H 1.48498 * 109.46929 * 210.00063 * 3 2 1 6 6 H 1.48504 * 109.46998 * 329.99680 * 3 2 1 7 7 C 1.39938 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99969 * 17.10260 * 7 2 1 9 9 C 1.41393 * 120.00244 * 197.10039 * 7 2 1 10 10 C 1.40730 * 120.24523 * 29.34807 * 9 7 2 11 11 C 1.37598 * 119.75045 * 180.02562 * 10 9 7 12 12 C 1.38655 * 120.24576 * 0.02562 * 11 10 9 13 13 C 1.38613 * 120.50174 * 359.97438 * 12 11 10 14 14 C 1.37640 * 120.24862 * 359.67182 * 13 12 11 15 15 C 1.50700 * 120.13180 * 180.32332 * 14 13 12 16 16 C 1.50701 * 109.46813 * 265.30632 * 15 14 13 17 17 O 1.21280 * 120.00223 * 359.97438 * 16 15 14 18 18 N 1.34784 * 119.99906 * 180.02562 * 16 15 14 19 19 C 1.46501 * 119.99968 * 180.02562 * 18 16 15 20 20 C 1.52995 * 109.46781 * 179.97438 * 19 18 16 21 21 C 1.53006 * 109.46832 * 179.97438 * 20 19 18 22 22 C 1.53005 * 109.46810 * 180.02562 * 21 20 19 23 23 C 1.53006 * 109.46810 * 180.02562 * 22 21 20 24 24 O 1.42901 * 109.46812 * 179.97438 * 23 22 21 25 25 H 0.97004 * 119.99819 * 175.46146 * 1 2 3 26 26 H 1.08003 * 120.12932 * 359.97438 * 10 9 7 27 27 H 1.08002 * 119.87930 * 180.02562 * 11 10 9 28 28 H 1.08001 * 119.75352 * 179.97438 * 12 11 10 29 29 H 1.08005 * 119.87936 * 179.97438 * 13 12 11 30 30 H 1.08999 * 109.46812 * 25.30470 * 15 14 13 31 31 H 1.08998 * 109.47079 * 145.30506 * 15 14 13 32 32 H 0.96998 * 119.99931 * 359.97438 * 18 16 15 33 33 H 1.08998 * 109.46479 * 299.99728 * 19 18 16 34 34 H 1.09002 * 109.47252 * 59.99451 * 19 18 16 35 35 H 1.09001 * 109.47390 * 299.99737 * 20 19 18 36 36 H 1.09002 * 109.47570 * 59.99775 * 20 19 18 37 37 H 1.08999 * 109.47265 * 299.99623 * 21 20 19 38 38 H 1.08998 * 109.47322 * 60.00085 * 21 20 19 39 39 H 1.09004 * 109.46861 * 299.99092 * 22 21 20 40 40 H 1.08998 * 109.47140 * 59.99935 * 22 21 20 41 41 H 1.09001 * 109.47059 * 300.00073 * 23 22 21 42 42 H 1.09002 * 109.47087 * 59.99612 * 23 22 21 43 43 H 0.96700 * 113.99614 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4896 2.0466 1.4000 5 1 3.5397 1.4402 -0.7000 6 1 1.4396 2.6527 -0.7001 7 6 2.0080 -1.2119 0.0005 8 1 1.5038 -2.1266 -0.2741 9 6 3.3750 -1.2388 0.3606 10 6 3.8884 -0.2916 1.2660 11 6 5.2205 -0.3268 1.6089 12 6 6.0563 -1.2905 1.0655 13 6 5.5616 -2.2284 0.1728 14 6 4.2309 -2.2166 -0.1789 15 6 3.6944 -3.2420 -1.1441 16 6 3.7033 -2.6718 -2.5390 17 8 4.1053 -1.5437 -2.7305 18 7 3.2636 -3.4153 -3.5738 19 6 3.2728 -2.8612 -4.9299 20 6 2.7280 -3.9022 -5.9098 21 6 2.7370 -3.3233 -7.3261 22 6 2.1916 -4.3642 -8.3059 23 6 2.2012 -3.7855 -9.7223 24 8 1.6923 -4.7579 -10.6375 25 1 -0.4850 -0.8375 -0.0665 26 1 3.2394 0.4608 1.6895 27 1 5.6165 0.3989 2.3039 28 1 7.1007 -1.3106 1.3399 29 1 6.2217 -2.9744 -0.2447 30 1 4.3205 -4.1337 -1.1120 31 1 2.6739 -3.5044 -0.8653 32 1 2.9418 -4.3174 -3.4206 33 1 2.6474 -1.9690 -4.9620 34 1 4.2936 -2.5995 -5.2086 35 1 3.3538 -4.7941 -5.8775 36 1 1.7073 -4.1643 -5.6313 37 1 2.1110 -2.4316 -7.3581 38 1 3.7576 -3.0610 -7.6049 39 1 2.8174 -5.2561 -8.2741 40 1 1.1710 -4.6261 -8.0269 41 1 1.5758 -2.8933 -9.7545 42 1 3.2220 -3.5239 -10.0010 43 1 1.6690 -4.4584 -11.5567 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791059619.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:43 Heat of formation + Delta-G solvation = -123.534138 kcal Electronic energy + Delta-G solvation = -22494.159572 eV Core-core repulsion = 19115.646769 eV Total energy + Delta-G solvation = -3378.512803 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.83266 -39.37320 -38.26565 -36.85589 -35.59236 -34.76176 -33.53866 -32.00583 -31.07984 -28.64445 -26.61891 -25.86547 -23.27424 -22.83124 -22.30366 -21.81606 -20.84488 -20.01094 -18.23679 -17.81034 -17.42473 -17.17540 -16.67324 -16.61680 -16.10457 -15.87840 -15.45065 -15.14972 -15.10345 -14.73568 -14.33811 -13.96626 -13.85871 -13.67851 -13.51660 -13.08115 -12.87029 -12.83134 -12.62161 -12.41014 -12.16902 -12.10847 -11.93505 -11.86241 -11.58723 -11.57562 -11.13641 -10.88461 -10.86008 -10.78218 -10.02222 -9.55809 -9.33726 -9.14526 -6.47927 0.82061 0.91020 1.31336 1.51541 1.73089 1.82448 2.16119 2.35244 2.71373 3.29718 3.53783 3.91733 3.93650 4.07519 4.10097 4.17992 4.27146 4.35362 4.45715 4.47284 4.49454 4.55152 4.59657 4.69620 4.77559 4.82161 4.88949 4.92220 4.98706 5.00161 5.12935 5.25836 5.33103 5.37807 5.51434 5.56456 5.62403 5.83953 5.90370 6.03526 6.19534 6.48837 6.66612 6.75504 6.87779 6.89396 7.43905 8.07574 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018605 B = 0.003265 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.639498 B = 8572.975360 C = 9445.809214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.013 3.987 3 Si 1.098 2.902 4 H -0.257 1.257 5 H -0.278 1.278 6 H -0.286 1.286 7 C -0.532 4.532 8 H 0.059 0.941 9 C 0.083 3.917 10 C -0.266 4.266 11 C -0.088 4.088 12 C -0.232 4.232 13 C -0.080 4.080 14 C -0.177 4.177 15 C -0.071 4.071 16 C 0.514 3.486 17 O -0.575 6.575 18 N -0.727 5.727 19 C 0.119 3.881 20 C -0.116 4.116 21 C -0.110 4.110 22 C -0.117 4.117 23 C 0.071 3.929 24 O -0.599 6.599 25 H 0.277 0.723 26 H 0.098 0.902 27 H 0.124 0.876 28 H 0.129 0.871 29 H 0.126 0.874 30 H 0.120 0.880 31 H 0.089 0.911 32 H 0.413 0.587 33 H 0.040 0.960 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.051 0.949 42 H 0.057 0.943 43 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.892 -9.532 -14.647 18.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.200 4.200 3 Si 0.923 3.077 4 H -0.183 1.183 5 H -0.204 1.204 6 H -0.214 1.214 7 C -0.562 4.562 8 H 0.077 0.923 9 C 0.081 3.919 10 C -0.285 4.285 11 C -0.106 4.106 12 C -0.251 4.251 13 C -0.098 4.098 14 C -0.178 4.178 15 C -0.111 4.111 16 C 0.302 3.698 17 O -0.453 6.453 18 N -0.381 5.381 19 C -0.005 4.005 20 C -0.154 4.154 21 C -0.149 4.149 22 C -0.155 4.155 23 C -0.007 4.007 24 O -0.407 6.407 25 H 0.088 0.912 26 H 0.115 0.885 27 H 0.142 0.858 28 H 0.147 0.853 29 H 0.144 0.856 30 H 0.138 0.862 31 H 0.107 0.893 32 H 0.250 0.750 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 5.807 -7.475 -14.205 17.070 hybrid contribution -0.552 -1.561 -0.386 1.700 sum 5.255 -9.036 -14.591 17.949 Atomic orbital electron populations 1.70613 1.08300 1.32280 1.36703 1.27853 0.95837 1.06312 0.89970 0.83250 0.74424 0.71640 0.78430 1.18294 1.20404 1.21370 1.20467 0.95763 0.95830 1.44176 0.92279 1.17814 0.93030 0.91546 0.89504 1.21303 0.97056 1.04931 1.05174 1.21006 0.93046 0.97990 0.98604 1.20900 0.99718 0.99742 1.04706 1.20901 0.93937 0.98302 0.96632 1.19544 0.93999 1.01793 1.02499 1.20319 1.03338 0.98095 0.89338 1.21091 0.75876 0.85287 0.87541 1.90656 1.48005 1.20697 1.85929 1.45920 1.66451 1.18804 1.06912 1.21337 1.00797 0.97059 0.81286 1.21686 1.02227 0.97944 0.93548 1.21361 1.02231 0.98310 0.92952 1.21471 1.01991 0.99036 0.92974 1.22270 0.98178 0.90751 0.89474 1.86419 1.87795 1.44085 1.22445 0.91241 0.88463 0.85767 0.85306 0.85633 0.86209 0.89325 0.75006 0.94185 0.92324 0.89545 0.90856 0.91714 0.90720 0.91206 0.91893 0.93033 0.92499 0.75319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.10 13.65 21.82 0.30 -48.80 16 2 C 0.01 0.74 5.42 85.26 0.46 1.20 16 3 Si 1.10 54.66 24.89 68.60 1.71 56.37 16 4 H -0.26 -11.68 6.44 99.48 0.64 -11.04 16 5 H -0.28 -14.64 7.02 99.48 0.70 -13.94 16 6 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 7 C -0.53 -29.90 8.80 23.46 0.21 -29.69 16 8 H 0.06 3.37 6.60 -2.91 -0.02 3.35 16 9 C 0.08 4.41 5.13 -21.29 -0.11 4.30 16 10 C -0.27 -13.35 7.26 22.73 0.16 -13.18 16 11 C -0.09 -3.83 10.02 22.22 0.22 -3.61 16 12 C -0.23 -9.29 10.05 22.46 0.23 -9.06 16 13 C -0.08 -3.26 9.66 22.22 0.21 -3.04 16 14 C -0.18 -8.11 4.43 -19.40 -0.09 -8.20 16 15 C -0.07 -2.67 5.36 29.10 0.16 -2.52 16 16 C 0.51 20.27 7.82 87.66 0.69 20.96 16 17 O -0.57 -28.80 16.03 -3.03 -0.05 -28.85 16 18 N -0.73 -20.84 5.56 -463.06 -2.57 -23.42 16 19 C 0.12 3.10 5.67 86.38 0.49 3.59 16 20 C -0.12 -1.99 5.33 30.59 0.16 -1.83 16 21 C -0.11 -1.69 5.21 30.60 0.16 -1.53 16 22 C -0.12 -1.75 5.58 30.60 0.17 -1.58 16 23 C 0.07 0.96 7.05 71.98 0.51 1.47 16 24 O -0.60 -9.22 13.66 -148.98 -2.04 -11.25 16 25 H 0.28 15.55 8.73 -92.71 -0.81 14.74 16 26 H 0.10 4.91 4.43 -2.91 -0.01 4.90 16 27 H 0.12 4.51 8.06 -2.91 -0.02 4.48 16 28 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 29 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 30 H 0.12 3.36 8.05 -2.39 -0.02 3.34 16 31 H 0.09 3.39 6.51 -2.39 -0.02 3.37 16 32 H 0.41 8.68 8.47 -92.71 -0.79 7.90 16 33 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.09 1.21 8.14 -2.39 -0.02 1.20 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.40 2.41 9.12 -74.06 -0.68 1.74 16 Total: -1.00 -74.32 354.68 0.43 -73.90 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: -0.56 Total: 24.76 kcal Atomic # 6 Polarization: -46.35 SS G_CDS: 3.63 Total: -42.72 kcal Atomic # 7 Polarization: -69.94 SS G_CDS: -2.27 Total: -72.22 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -2.08 Total: -40.10 kcal Atomic # 14 Polarization: 54.66 SS G_CDS: 1.71 Total: 56.37 kcal Total: -74.32 0.43 -73.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791059619.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.638 kcal (2) G-P(sol) polarization free energy of solvation -74.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds