Wall clock time and date at job start Tue Mar 31 2020 06:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34080 * 118.89863 * 2 1 4 4 C 1.41520 * 118.44259 * 0.24625 * 3 2 1 5 5 O 1.21772 * 119.99977 * 259.05490 * 4 3 2 6 6 N 1.34774 * 119.99929 * 79.06111 * 4 3 2 7 7 C 1.46505 * 119.99919 * 175.09066 * 6 4 3 8 8 C 1.50703 * 109.46773 * 179.97438 * 7 6 4 9 9 H 1.08001 * 120.00322 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99459 * 180.02562 * 8 7 6 11 11 N 1.31522 * 119.99751 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 120.00326 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.46690 * 89.99935 * 12 10 8 14 14 H 1.48498 * 109.46914 * 209.99954 * 12 10 8 15 15 H 1.48498 * 109.46775 * 330.00198 * 12 10 8 16 16 C 1.50550 * 123.10911 * 180.27055 * 3 2 1 17 17 H 1.08994 * 109.47232 * 107.82008 * 16 3 2 18 18 C 1.52997 * 109.47298 * 227.83177 * 16 3 2 19 19 N 1.46022 * 109.44092 * 347.81899 * 16 3 2 20 20 N 1.39390 * 129.86106 * 191.95678 * 19 16 3 21 21 C 1.31030 * 106.75439 * 180.33158 * 20 19 16 22 22 N 1.33697 * 109.18738 * 359.91015 * 21 20 19 23 23 C 1.30483 * 109.54795 * 359.93259 * 22 21 20 24 24 N 1.37342 * 118.89397 * 179.72636 * 2 1 3 25 25 C 1.46496 * 121.30153 * 12.60640 * 24 2 1 26 26 H 1.09006 * 109.47059 * 87.44446 * 1 2 3 27 27 H 1.08995 * 109.47304 * 207.44886 * 1 2 3 28 28 H 1.09003 * 109.46919 * 327.44866 * 1 2 3 29 29 H 0.97002 * 120.00295 * 355.08681 * 6 4 3 30 30 H 1.08998 * 109.46986 * 299.99496 * 7 6 4 31 31 H 1.08995 * 109.46733 * 60.00235 * 7 6 4 32 32 H 0.96998 * 119.99994 * 180.02562 * 11 10 8 33 33 H 1.08998 * 109.47243 * 64.30477 * 18 16 3 34 34 H 1.09003 * 109.46933 * 184.30317 * 18 16 3 35 35 H 1.09000 * 109.47571 * 304.29799 * 18 16 3 36 36 H 1.07994 * 125.41163 * 179.88991 * 21 20 19 37 37 H 1.09002 * 109.47475 * 89.99612 * 25 24 2 38 38 H 1.09005 * 109.46690 * 209.99764 * 25 24 2 39 39 H 1.08994 * 109.46971 * 329.99393 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1549 1.1738 0.0000 4 6 1.3912 2.3653 0.0053 5 8 1.2273 2.9881 -1.0281 6 7 0.8454 2.8107 1.1543 7 6 0.1465 4.0980 1.1825 8 6 -0.3668 4.3604 2.5749 9 1 -0.1897 3.6407 3.3604 10 6 -1.0625 5.5196 2.8460 11 7 -1.5099 5.7490 4.0613 12 14 -1.3682 6.7649 1.4877 13 1 -2.6495 6.4496 0.8064 14 1 -1.4409 8.1278 2.0729 15 1 -0.2572 6.7071 0.5040 16 6 3.6563 1.2844 -0.0060 17 1 3.9915 1.6269 -0.9849 18 6 4.0983 2.2851 1.0636 19 7 4.2410 -0.0229 0.2792 20 7 5.5553 -0.3643 0.5939 21 6 5.5796 -1.6645 0.7548 22 7 4.3511 -2.1545 0.5596 23 6 3.5322 -1.1793 0.2749 24 7 2.1705 -1.2024 0.0057 25 6 1.4688 -2.4603 -0.2614 26 1 -0.3633 0.0458 -1.0267 27 1 -0.3633 -0.9119 0.4737 28 1 -0.3633 0.8663 0.5530 29 1 0.9153 2.2790 1.9626 30 1 0.8351 4.8917 0.8931 31 1 -0.6913 4.0718 0.4858 32 1 -1.9997 6.5642 4.2520 33 1 3.8304 1.9052 2.0495 34 1 5.1782 2.4227 1.0084 35 1 3.6013 3.2405 0.8950 36 1 6.4534 -2.2478 1.0050 37 1 1.4910 -2.6688 -1.3311 38 1 1.9592 -3.2714 0.2771 39 1 0.4342 -2.3769 0.0710 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799004537.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:53 Heat of formation + Delta-G solvation = 74.570016 kcal Electronic energy + Delta-G solvation = -23712.744016 eV Core-core repulsion = 20271.574062 eV Total energy + Delta-G solvation = -3441.169954 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 9.78 seconds Orbital eigenvalues (eV) -43.63388 -41.41645 -39.44318 -36.81948 -36.13976 -34.48354 -33.64323 -32.36278 -31.16000 -29.98427 -29.07815 -27.38083 -25.53664 -23.88491 -23.50577 -22.44476 -21.86958 -19.97272 -19.69512 -18.51352 -17.97133 -17.40825 -17.05124 -16.80302 -16.43295 -16.15282 -15.80098 -15.45556 -15.25686 -14.79120 -14.72584 -14.35390 -14.16542 -14.00777 -13.77759 -13.68356 -13.29677 -13.16372 -13.05786 -12.90269 -12.68276 -12.41368 -12.12266 -11.91871 -11.63419 -11.26550 -11.13374 -10.90433 -10.89119 -10.72009 -9.93803 -8.89698 -8.37103 -6.44015 0.14311 0.69486 0.85610 1.23059 1.35569 1.38523 1.50008 1.77165 1.89104 2.30415 2.57233 2.98399 3.01794 3.41247 3.53362 3.75594 3.86619 3.97033 4.03559 4.21476 4.33896 4.41758 4.48736 4.56777 4.62602 4.73075 4.79376 4.84049 4.96517 5.00055 5.06830 5.11740 5.18264 5.28033 5.40365 5.47003 5.70144 5.98125 6.09254 6.56244 6.77305 6.99329 7.15597 7.31859 8.77635 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.024206 B = 0.004289 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.460485 B = 6526.407973 C = 6909.844953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.217 3.783 3 C -0.314 4.314 4 C 0.590 3.410 5 O -0.585 6.585 6 N -0.694 5.694 7 C 0.231 3.769 8 C -0.543 4.543 9 H 0.057 0.943 10 C 0.028 3.972 11 N -0.933 5.933 12 Si 0.935 3.065 13 H -0.263 1.263 14 H -0.278 1.278 15 H -0.258 1.258 16 C 0.239 3.761 17 H 0.090 0.910 18 C -0.147 4.147 19 N -0.399 5.399 20 N -0.330 5.330 21 C 0.217 3.783 22 N -0.564 5.564 23 C 0.488 3.512 24 N -0.508 5.508 25 C 0.084 3.916 26 H 0.105 0.895 27 H 0.120 0.880 28 H 0.080 0.920 29 H 0.405 0.595 30 H 0.015 0.985 31 H 0.020 0.980 32 H 0.271 0.729 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.263 0.737 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.553 -17.875 -8.310 21.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.113 3.887 3 C -0.327 4.327 4 C 0.377 3.623 5 O -0.466 6.466 6 N -0.343 5.343 7 C 0.108 3.892 8 C -0.581 4.581 9 H 0.075 0.925 10 C -0.172 4.172 11 N -0.572 5.572 12 Si 0.759 3.241 13 H -0.188 1.188 14 H -0.203 1.203 15 H -0.182 1.182 16 C 0.136 3.864 17 H 0.107 0.893 18 C -0.205 4.205 19 N -0.195 5.195 20 N -0.158 5.158 21 C -0.085 4.085 22 N -0.299 5.299 23 C 0.125 3.875 24 N -0.215 5.215 25 C -0.055 4.055 26 H 0.124 0.876 27 H 0.138 0.862 28 H 0.099 0.901 29 H 0.240 0.760 30 H 0.033 0.967 31 H 0.038 0.962 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.278 0.722 37 H 0.099 0.901 38 H 0.112 0.888 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.820 -17.247 -8.840 20.898 hybrid contribution -0.245 0.876 0.166 0.925 sum 7.575 -16.371 -8.673 20.015 Atomic orbital electron populations 1.21392 0.85719 1.06318 1.05790 1.19878 0.95486 0.82968 0.90352 1.19375 0.94391 0.93474 1.25477 1.16287 0.78579 0.84164 0.83273 1.90795 1.62416 1.60196 1.33187 1.46219 1.54750 1.22076 1.11277 1.19169 0.91868 0.82168 0.96043 1.21256 1.36106 1.06222 0.94501 0.92479 1.25572 0.94468 0.99595 0.97580 1.69989 1.38050 1.27540 1.21582 0.85894 0.79937 0.78600 0.79703 1.18763 1.20315 1.18209 1.19398 0.87401 0.79400 1.00219 0.89254 1.22028 1.02898 0.97930 0.97670 1.50393 1.06139 1.07385 1.55572 1.77881 0.94702 1.16803 1.26394 1.26882 0.95988 0.89191 0.96466 1.70303 1.01866 1.28675 1.29041 1.20654 0.86848 0.84349 0.95698 1.42978 1.01205 1.08093 1.69234 1.22375 0.98644 0.81119 1.03395 0.87641 0.86198 0.90138 0.75997 0.96736 0.96199 0.91952 0.92128 0.90167 0.91318 0.72178 0.90092 0.88763 0.86576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 8.85 71.23 0.63 -1.94 16 2 C 0.22 5.24 6.58 40.74 0.27 5.51 16 3 C -0.31 -9.43 5.10 -20.05 -0.10 -9.54 16 4 C 0.59 21.47 3.97 85.05 0.34 21.81 16 5 O -0.58 -25.57 17.10 -4.58 -0.08 -25.65 16 6 N -0.69 -26.51 4.63 -475.96 -2.20 -28.71 16 7 C 0.23 10.73 4.50 85.63 0.39 11.11 16 8 C -0.54 -28.84 9.83 25.60 0.25 -28.59 16 9 H 0.06 3.22 7.84 -2.91 -0.02 3.20 16 10 C 0.03 1.54 5.47 84.65 0.46 2.00 16 11 N -0.93 -54.66 13.96 21.45 0.30 -54.36 16 12 Si 0.93 42.66 27.47 68.60 1.88 44.54 16 13 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 14 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 15 H -0.26 -11.59 6.54 99.48 0.65 -10.94 16 16 C 0.24 7.10 3.90 44.29 0.17 7.27 16 17 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 18 C -0.15 -4.30 9.12 71.98 0.66 -3.64 16 19 N -0.40 -11.49 3.77 -333.91 -1.26 -12.75 16 20 N -0.33 -9.00 12.60 -60.80 -0.77 -9.76 16 21 C 0.22 4.74 13.03 180.53 2.35 7.09 16 22 N -0.56 -13.93 10.96 -201.34 -2.21 -16.13 16 23 C 0.49 12.88 8.23 260.70 2.15 15.03 16 24 N -0.51 -10.92 3.15 -535.67 -1.69 -12.60 16 25 C 0.08 1.02 10.48 127.77 1.34 2.36 16 26 H 0.11 1.80 8.14 -2.38 -0.02 1.79 16 27 H 0.12 1.38 6.12 -2.39 -0.01 1.37 16 28 H 0.08 1.96 6.21 -2.39 -0.01 1.95 16 29 H 0.40 14.22 8.28 -92.71 -0.77 13.45 16 30 H 0.01 0.72 7.20 -2.39 -0.02 0.70 16 31 H 0.02 0.95 7.57 -2.39 -0.02 0.93 16 32 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.07 2.18 7.25 -2.39 -0.02 2.17 16 36 H 0.26 3.00 8.06 -2.91 -0.02 2.98 16 37 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.09 1.14 7.89 -2.38 -0.02 1.13 16 39 H 0.12 0.78 5.81 -2.39 -0.01 0.76 16 Total: -1.00 -71.54 324.71 3.15 -68.39 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.27 Total: 18.55 kcal Atomic # 6 Polarization: 19.59 SS G_CDS: 8.90 Total: 28.49 kcal Atomic # 7 Polarization: -126.50 SS G_CDS: -7.82 Total: -134.33 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.08 Total: -25.65 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.88 Total: 44.54 kcal Total: -71.54 3.15 -68.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799004537.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.961 kcal (2) G-P(sol) polarization free energy of solvation -71.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.78 seconds