Wall clock time and date at job start Tue Mar 31 2020 09:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99751 * 2 1 4 4 H 1.48502 * 109.46719 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47130 * 299.99585 * 3 2 1 6 6 H 1.48501 * 109.47193 * 59.99959 * 3 2 1 7 7 C 1.37874 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99976 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00235 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47215 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46880 * 180.02562 * 10 9 7 12 12 C 1.53009 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.47097 * 179.97438 * 12 11 10 14 14 O 1.20825 * 120.00224 * 359.97438 * 13 12 11 15 15 O 1.34232 * 119.99727 * 179.97438 * 13 12 11 16 16 C 1.45206 * 116.99878 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.46781 * 180.02562 * 16 15 13 18 18 C 1.53006 * 109.46626 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.46866 * 179.97438 * 18 17 16 20 20 C 1.38654 * 120.79058 * 269.72060 * 19 18 17 21 21 C 1.38199 * 119.16218 * 179.80010 * 20 19 18 22 22 N 1.31872 * 120.76598 * 0.48658 * 21 20 19 23 23 C 1.31867 * 121.72568 * 359.73700 * 22 21 20 24 24 C 1.38211 * 120.76480 * 0.03137 * 23 22 21 25 25 H 0.96993 * 119.99814 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46862 * 59.99043 * 9 7 2 27 27 H 1.08996 * 109.46549 * 299.99973 * 9 7 2 28 28 H 1.08997 * 109.47192 * 60.00086 * 10 9 7 29 29 H 1.09003 * 109.46861 * 299.99745 * 10 9 7 30 30 H 1.09001 * 109.47677 * 60.00006 * 11 10 9 31 31 H 1.09003 * 109.47116 * 299.99529 * 11 10 9 32 32 H 1.09001 * 109.46838 * 59.99490 * 12 11 10 33 33 H 1.09003 * 109.46737 * 299.99760 * 12 11 10 34 34 H 1.08993 * 109.46780 * 59.99892 * 16 15 13 35 35 H 1.09000 * 109.47070 * 300.00158 * 16 15 13 36 36 H 1.08993 * 109.47839 * 60.00189 * 17 16 15 37 37 H 1.09000 * 109.47160 * 299.99751 * 17 16 15 38 38 H 1.09000 * 109.47050 * 299.99699 * 18 17 16 39 39 H 1.09001 * 109.46801 * 59.99811 * 18 17 16 40 40 H 1.08000 * 120.41963 * 359.97438 * 20 19 18 41 41 H 1.08005 * 119.61842 * 180.20536 * 21 20 19 42 42 H 1.07994 * 119.62246 * 180.02562 * 23 22 21 43 43 H 1.07996 * 120.41847 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 -0.0001 12 6 2.4747 -6.1500 0.0005 13 6 1.7212 -7.4551 0.0005 14 8 0.5129 -7.4551 0.0005 15 8 2.3924 -8.6176 0.0005 16 6 1.6015 -9.8354 0.0011 17 6 2.5336 -11.0486 0.0017 18 6 1.7003 -12.3319 0.0016 19 6 2.6183 -13.5269 0.0015 20 6 3.0461 -14.0933 -1.1896 21 6 3.8911 -15.1861 -1.1504 22 7 4.2823 -15.6954 0.0014 23 6 3.8920 -15.1857 1.1532 24 6 3.0507 -14.0899 1.1926 25 1 -0.4849 0.8400 0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8903 28 1 2.8720 -3.6043 0.8905 29 1 2.8720 -3.6043 -0.8895 30 1 0.8540 -5.0446 -0.8903 31 1 0.8535 -5.0451 0.8897 32 1 3.1007 -6.0923 0.8910 33 1 3.1019 -6.0922 -0.8891 34 1 0.9724 -9.8604 -0.8886 35 1 0.9731 -9.8600 0.8913 36 1 3.1625 -11.0235 0.8916 37 1 3.1624 -11.0242 -0.8884 38 1 1.0712 -12.3566 0.8914 39 1 1.0718 -12.3568 -0.8886 40 1 2.7252 -13.6838 -2.1360 41 1 4.2315 -15.6310 -2.0738 42 1 4.2335 -15.6297 2.0765 43 1 2.7348 -13.6767 2.1391 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805695842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:33 Heat of formation + Delta-G solvation = -92.494053 kcal Electronic energy + Delta-G solvation = -21000.984373 eV Core-core repulsion = 17623.817569 eV Total energy + Delta-G solvation = -3377.166804 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -40.66948 -40.42403 -37.10067 -35.58392 -34.98571 -32.71548 -32.00878 -31.65319 -29.94617 -27.35735 -25.73813 -23.92043 -23.36407 -22.44118 -21.65938 -20.53502 -20.03770 -17.63923 -17.13984 -17.02003 -16.68262 -16.25046 -16.15981 -15.94601 -15.32825 -14.49483 -14.43536 -14.43395 -14.05095 -13.82945 -13.17911 -13.12514 -12.76153 -12.66630 -12.36557 -12.07978 -11.86717 -11.66509 -11.62272 -11.44397 -11.03157 -10.71853 -10.59595 -10.56125 -10.48013 -10.40299 -10.00536 -9.91808 -9.66631 -9.61375 -9.30119 -9.01985 -8.33011 -5.97655 -4.00221 0.67703 0.75965 2.26523 2.58170 3.32039 3.36221 3.39392 3.43378 3.99580 4.05470 4.20180 4.47233 4.52765 4.56397 4.63418 4.68839 4.68936 4.88306 4.94824 5.08855 5.14374 5.25309 5.25646 5.28417 5.31785 5.38024 5.50151 5.54253 5.63350 5.75557 5.88698 6.04054 6.17937 6.24403 6.37598 6.46226 6.75150 6.93257 7.14853 7.52848 7.71220 7.79244 7.85641 8.03174 8.44952 9.07583 9.63784 11.13680 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.054804 B = 0.001653 C = 0.001635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.784423 B =16932.328317 C =17117.917686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.108 4.108 12 C -0.112 4.112 13 C 0.460 3.540 14 O -0.506 6.506 15 O -0.363 6.363 16 C 0.065 3.935 17 C -0.113 4.113 18 C -0.082 4.082 19 C -0.035 4.035 20 C -0.170 4.170 21 C 0.100 3.900 22 N -0.491 5.491 23 C 0.100 3.900 24 C -0.170 4.170 25 H 0.259 0.741 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.136 0.864 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.361 -30.695 0.004 31.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.146 4.146 12 C -0.149 4.149 13 C 0.303 3.697 14 O -0.393 6.393 15 O -0.280 6.280 16 C -0.009 4.009 17 C -0.150 4.150 18 C -0.119 4.119 19 C -0.044 4.044 20 C -0.190 4.190 21 C -0.057 4.057 22 N -0.200 5.200 23 C -0.057 4.057 24 C -0.190 4.190 25 H 0.069 0.931 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.153 0.847 41 H 0.173 0.827 42 H 0.173 0.827 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.390 -31.340 0.003 31.985 hybrid contribution -0.325 1.600 0.000 1.633 sum 6.064 -29.740 0.003 30.352 Atomic orbital electron populations 1.69984 1.06055 1.26432 1.50980 1.25043 0.94846 0.99270 0.95410 0.86547 0.80092 0.83860 0.77551 1.19756 1.21045 1.21048 1.21317 0.93071 0.91138 1.50371 0.92622 1.19108 0.94049 0.91264 0.97381 1.21650 0.99147 0.93546 1.00426 1.21581 0.97090 0.92716 1.03225 1.21616 0.99938 0.87872 1.05515 1.24220 0.87598 0.85890 0.71954 1.90672 1.15727 1.87868 1.44984 1.86513 1.42021 1.15019 1.84464 1.22978 0.93583 0.81544 1.02808 1.21503 0.98261 0.90938 1.04339 1.20555 0.96504 0.90604 1.04253 1.20242 0.95517 0.95396 0.93203 1.22107 0.99898 0.98109 0.98873 1.22796 0.93618 0.92951 0.96334 1.67691 1.22996 1.30670 0.98635 1.22796 0.93634 0.92935 0.96333 1.22109 0.99900 0.98102 0.98876 0.93089 0.96534 0.96523 0.93186 0.93193 0.91548 0.91556 0.87867 0.87864 0.91134 0.91141 0.90403 0.90410 0.89886 0.89891 0.84652 0.82697 0.82698 0.84651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.26 13.29 55.43 0.74 -26.53 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.11 -2.21 5.15 -26.73 -0.14 -2.34 16 11 C -0.11 -1.86 4.50 -26.73 -0.12 -1.98 16 12 C -0.11 -1.47 5.81 -27.88 -0.16 -1.63 16 13 C 0.46 6.43 7.96 36.00 0.29 6.71 16 14 O -0.51 -8.60 15.73 -18.75 -0.29 -8.89 16 15 O -0.36 -4.29 10.22 -39.26 -0.40 -4.69 16 16 C 0.06 0.59 5.47 37.16 0.20 0.79 16 17 C -0.11 -0.74 5.58 -26.73 -0.15 -0.89 16 18 C -0.08 -0.42 5.39 -27.88 -0.15 -0.57 16 19 C -0.04 -0.22 5.17 -104.32 -0.54 -0.76 16 20 C -0.17 -1.04 9.82 -39.44 -0.39 -1.42 16 21 C 0.10 0.69 11.18 -17.55 -0.20 0.50 16 22 N -0.49 -4.25 10.36 -13.25 -0.14 -4.39 16 23 C 0.10 0.69 11.18 -17.55 -0.20 0.50 16 24 C -0.17 -1.04 9.82 -39.44 -0.39 -1.42 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 31 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 32 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.07 0.64 8.13 -51.93 -0.42 0.21 16 35 H 0.07 0.64 8.13 -51.93 -0.42 0.21 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.37 8.10 -51.93 -0.42 -0.05 16 39 H 0.08 0.37 8.10 -51.93 -0.42 -0.05 16 40 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 41 H 0.16 0.71 8.06 -52.48 -0.42 0.28 16 42 H 0.16 0.71 8.06 -52.49 -0.42 0.28 16 43 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 LS Contribution 369.12 15.07 5.56 5.56 Total: -1.00 -34.09 369.12 -9.18 -43.27 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -7.14 Total: -5.22 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -2.49 Total: -15.83 kcal Atomic # 7 Polarization: -31.52 SS G_CDS: 0.60 Total: -30.92 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -0.70 Total: -13.59 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.09 -9.18 -43.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805695842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.221 kcal (2) G-P(sol) polarization free energy of solvation -34.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds