Wall clock time and date at job start Tue Mar 31 2020 09:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99751 * 2 1 4 4 H 1.48502 * 109.46719 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47130 * 299.99585 * 3 2 1 6 6 H 1.48501 * 109.47193 * 59.99959 * 3 2 1 7 7 C 1.37874 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99976 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00235 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47215 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46880 * 180.02562 * 10 9 7 12 12 C 1.53009 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.47097 * 179.97438 * 12 11 10 14 14 O 1.20825 * 120.00224 * 359.97438 * 13 12 11 15 15 O 1.34232 * 119.99727 * 179.97438 * 13 12 11 16 16 C 1.45206 * 116.99878 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.46781 * 180.02562 * 16 15 13 18 18 C 1.53006 * 109.46626 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.46866 * 179.97438 * 18 17 16 20 20 C 1.38654 * 120.79058 * 269.72060 * 19 18 17 21 21 C 1.38199 * 119.16218 * 179.80010 * 20 19 18 22 22 N 1.31872 * 120.76598 * 0.48658 * 21 20 19 23 23 C 1.31867 * 121.72568 * 359.73700 * 22 21 20 24 24 C 1.38211 * 120.76480 * 0.03137 * 23 22 21 25 25 H 0.96993 * 119.99814 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46862 * 59.99043 * 9 7 2 27 27 H 1.08996 * 109.46549 * 299.99973 * 9 7 2 28 28 H 1.08997 * 109.47192 * 60.00086 * 10 9 7 29 29 H 1.09003 * 109.46861 * 299.99745 * 10 9 7 30 30 H 1.09001 * 109.47677 * 60.00006 * 11 10 9 31 31 H 1.09003 * 109.47116 * 299.99529 * 11 10 9 32 32 H 1.09001 * 109.46838 * 59.99490 * 12 11 10 33 33 H 1.09003 * 109.46737 * 299.99760 * 12 11 10 34 34 H 1.08993 * 109.46780 * 59.99892 * 16 15 13 35 35 H 1.09000 * 109.47070 * 300.00158 * 16 15 13 36 36 H 1.08993 * 109.47839 * 60.00189 * 17 16 15 37 37 H 1.09000 * 109.47160 * 299.99751 * 17 16 15 38 38 H 1.09000 * 109.47050 * 299.99699 * 18 17 16 39 39 H 1.09001 * 109.46801 * 59.99811 * 18 17 16 40 40 H 1.08000 * 120.41963 * 359.97438 * 20 19 18 41 41 H 1.08005 * 119.61842 * 180.20536 * 21 20 19 42 42 H 1.07994 * 119.62246 * 180.02562 * 23 22 21 43 43 H 1.07996 * 120.41847 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 -0.0001 12 6 2.4747 -6.1500 0.0005 13 6 1.7212 -7.4551 0.0005 14 8 0.5129 -7.4551 0.0005 15 8 2.3924 -8.6176 0.0005 16 6 1.6015 -9.8354 0.0011 17 6 2.5336 -11.0486 0.0017 18 6 1.7003 -12.3319 0.0016 19 6 2.6183 -13.5269 0.0015 20 6 3.0461 -14.0933 -1.1896 21 6 3.8911 -15.1861 -1.1504 22 7 4.2823 -15.6954 0.0014 23 6 3.8920 -15.1857 1.1532 24 6 3.0507 -14.0899 1.1926 25 1 -0.4849 0.8400 0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8903 28 1 2.8720 -3.6043 0.8905 29 1 2.8720 -3.6043 -0.8895 30 1 0.8540 -5.0446 -0.8903 31 1 0.8535 -5.0451 0.8897 32 1 3.1007 -6.0923 0.8910 33 1 3.1019 -6.0922 -0.8891 34 1 0.9724 -9.8604 -0.8886 35 1 0.9731 -9.8600 0.8913 36 1 3.1625 -11.0235 0.8916 37 1 3.1624 -11.0242 -0.8884 38 1 1.0712 -12.3566 0.8914 39 1 1.0718 -12.3568 -0.8886 40 1 2.7252 -13.6838 -2.1360 41 1 4.2315 -15.6310 -2.0738 42 1 4.2335 -15.6297 2.0765 43 1 2.7348 -13.6767 2.1391 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805695842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:30 Heat of formation + Delta-G solvation = -110.672381 kcal Electronic energy + Delta-G solvation = -21001.772644 eV Core-core repulsion = 17623.817569 eV Total energy + Delta-G solvation = -3377.955075 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.54595 -41.06112 -38.07148 -36.64563 -36.15935 -34.65510 -32.65998 -32.09524 -31.57707 -28.29128 -27.21793 -24.65617 -24.37213 -23.46476 -22.20265 -21.95633 -21.39583 -18.66753 -18.36938 -17.94121 -17.62906 -17.33138 -17.07822 -16.48576 -16.41226 -16.36593 -15.47328 -15.00739 -14.66434 -14.55604 -14.55558 -14.12492 -13.81488 -13.63669 -13.54132 -13.34219 -13.27667 -12.85762 -12.64214 -12.37296 -12.31288 -12.19139 -12.17007 -12.00496 -11.61544 -11.48562 -11.37021 -11.28456 -11.03965 -10.54715 -10.49701 -10.41113 -10.06642 -8.18405 -6.30051 0.22585 0.28517 1.18781 1.41534 1.41906 1.55425 1.66540 2.42551 2.87941 3.14774 3.47867 3.62947 3.77009 3.78343 3.98265 3.98278 4.10150 4.10399 4.20772 4.25496 4.26817 4.42805 4.45164 4.60441 4.64851 4.68929 4.79692 4.81320 4.86949 4.89908 4.99693 5.08951 5.14030 5.15397 5.30953 5.33418 5.44749 5.46771 5.57795 5.78612 5.81661 5.89036 6.26187 6.74721 6.88718 7.05678 7.39684 8.93855 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.054804 B = 0.001653 C = 0.001635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.784423 B =16932.328317 C =17117.917686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.968 3.032 4 H -0.258 1.258 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.017 3.983 10 C -0.097 4.097 11 C -0.100 4.100 12 C -0.104 4.104 13 C 0.465 3.535 14 O -0.544 6.544 15 O -0.359 6.359 16 C 0.059 3.941 17 C -0.102 4.102 18 C -0.076 4.076 19 C -0.043 4.043 20 C -0.173 4.173 21 C 0.085 3.915 22 N -0.522 5.522 23 C 0.085 3.915 24 C -0.173 4.173 25 H 0.262 0.738 26 H -0.013 1.013 27 H -0.013 1.013 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.154 0.846 41 H 0.172 0.828 42 H 0.172 0.828 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.177 -30.978 0.004 32.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.020 4.020 10 C -0.134 4.134 11 C -0.138 4.138 12 C -0.141 4.141 13 C 0.310 3.690 14 O -0.434 6.434 15 O -0.276 6.276 16 C -0.015 4.015 17 C -0.139 4.139 18 C -0.113 4.113 19 C -0.051 4.051 20 C -0.193 4.193 21 C -0.072 4.072 22 N -0.232 5.232 23 C -0.072 4.072 24 C -0.193 4.193 25 H 0.071 0.929 26 H 0.005 0.995 27 H 0.006 0.994 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.171 0.829 41 H 0.189 0.811 42 H 0.189 0.811 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 8.235 -31.651 0.003 32.705 hybrid contribution -0.930 1.625 0.000 1.872 sum 7.306 -30.027 0.003 30.903 Atomic orbital electron populations 1.70130 1.07987 1.27642 1.51971 1.26060 0.95769 1.03631 0.94826 0.85353 0.79203 0.78552 0.77641 1.18178 1.20528 1.20536 1.21798 0.93794 0.92272 1.50097 0.91589 1.19071 0.94714 0.93649 0.94559 1.21443 0.97896 0.92427 1.01645 1.21354 0.97453 0.93248 1.01769 1.21498 0.98853 0.85738 1.08000 1.24279 0.86992 0.86741 0.70945 1.90668 1.17341 1.88426 1.46954 1.86494 1.42056 1.15208 1.83814 1.23244 0.94158 0.81171 1.02912 1.21432 0.97842 0.90247 1.04414 1.20519 0.96215 0.89343 1.05200 1.20423 0.95639 0.95717 0.93364 1.22346 0.99404 0.97760 0.99755 1.23149 0.93956 0.93451 0.96599 1.67685 1.24158 1.31808 0.99583 1.23149 0.93970 0.93436 0.96597 1.22348 0.99404 0.97756 0.99759 0.92889 0.99456 0.99446 0.91848 0.91857 0.93127 0.93136 0.85320 0.85316 0.91103 0.91110 0.90327 0.90339 0.89008 0.89014 0.82864 0.81133 0.81134 0.82866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.19 13.29 21.45 0.28 -57.90 16 2 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 3 Si 0.97 44.39 29.54 68.60 2.03 46.42 16 4 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.54 -30.97 9.11 25.60 0.23 -30.74 16 8 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 9 C 0.02 0.92 4.97 29.85 0.15 1.07 16 10 C -0.10 -3.79 5.15 30.59 0.16 -3.63 16 11 C -0.10 -3.40 4.50 30.60 0.14 -3.26 16 12 C -0.10 -2.48 5.81 29.85 0.17 -2.30 16 13 C 0.47 12.33 7.96 71.23 0.57 12.89 16 14 O -0.54 -18.37 15.73 21.97 0.35 -18.02 16 15 O -0.36 -7.78 10.22 -51.44 -0.53 -8.31 16 16 C 0.06 0.97 5.47 71.98 0.39 1.37 16 17 C -0.10 -1.12 5.58 30.60 0.17 -0.95 16 18 C -0.08 -0.63 5.39 29.85 0.16 -0.46 16 19 C -0.04 -0.47 5.17 -19.67 -0.10 -0.57 16 20 C -0.17 -1.86 9.82 22.36 0.22 -1.64 16 21 C 0.08 1.11 11.18 84.68 0.95 2.06 16 22 N -0.52 -8.84 10.36 -195.84 -2.03 -10.87 16 23 C 0.08 1.11 11.18 84.68 0.95 2.06 16 24 C -0.17 -1.86 9.82 22.36 0.22 -1.64 16 25 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 26 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 27 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 28 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.05 1.85 8.10 -2.39 -0.02 1.83 16 31 H 0.05 1.84 8.10 -2.39 -0.02 1.83 16 32 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.07 1.19 8.13 -2.39 -0.02 1.17 16 35 H 0.07 1.18 8.13 -2.39 -0.02 1.17 16 36 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.09 0.62 8.10 -2.39 -0.02 0.60 16 39 H 0.09 0.62 8.10 -2.39 -0.02 0.60 16 40 H 0.15 0.98 8.06 -2.91 -0.02 0.96 16 41 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 42 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 43 H 0.15 0.98 8.06 -2.91 -0.02 0.96 16 Total: -1.00 -74.65 369.12 5.90 -68.75 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: 0.96 Total: 5.56 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: 4.84 Total: -25.63 kcal Atomic # 7 Polarization: -67.03 SS G_CDS: -1.74 Total: -68.77 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.18 Total: -26.33 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -74.65 5.90 -68.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805695842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.918 kcal (2) G-P(sol) polarization free energy of solvation -74.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds