Wall clock time and date at job start Tue Mar 31 2020 07:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99649 * 2 1 4 4 H 1.48506 * 109.46869 * 240.00527 * 3 2 1 5 5 H 1.48504 * 109.47167 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47248 * 120.00358 * 3 2 1 7 7 C 1.37871 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99948 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00452 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47528 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47223 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46743 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.46696 * 179.97438 * 12 11 10 14 14 O 1.21282 * 120.00053 * 359.97438 * 13 12 11 15 15 N 1.34780 * 120.00131 * 179.97438 * 13 12 11 16 16 C 1.46498 * 120.00064 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.46937 * 179.97438 * 16 15 13 18 18 H 1.08999 * 109.46886 * 60.00211 * 17 16 15 19 19 O 1.42902 * 109.47015 * 300.00031 * 17 16 15 20 20 C 1.50700 * 109.47004 * 180.02562 * 17 16 15 21 21 C 1.38231 * 119.99825 * 84.86843 * 20 17 16 22 22 C 1.38243 * 120.00070 * 180.02562 * 21 20 17 23 23 C 1.38235 * 119.99602 * 0.07188 * 22 21 20 24 24 C 1.38230 * 120.00326 * 359.97438 * 23 22 21 25 25 C 1.38234 * 120.00292 * 264.99981 * 20 17 16 26 26 H 0.97005 * 120.00517 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47200 * 59.99277 * 9 7 2 28 28 H 1.09007 * 109.46745 * 299.99643 * 9 7 2 29 29 H 1.08999 * 109.47078 * 59.99594 * 10 9 7 30 30 H 1.09001 * 109.46337 * 299.99425 * 10 9 7 31 31 H 1.08996 * 109.46965 * 59.99204 * 11 10 9 32 32 H 1.08998 * 109.46810 * 299.99780 * 11 10 9 33 33 H 1.08999 * 109.47205 * 59.99861 * 12 11 10 34 34 H 1.08993 * 109.46977 * 299.99415 * 12 11 10 35 35 H 0.97000 * 119.99343 * 359.97438 * 15 13 12 36 36 H 1.08999 * 109.47160 * 60.00289 * 16 15 13 37 37 H 1.08998 * 109.47148 * 300.00167 * 16 15 13 38 38 H 0.96699 * 114.00101 * 299.99987 * 19 17 16 39 39 H 1.08001 * 120.00367 * 0.10906 * 21 20 17 40 40 H 1.08000 * 119.99728 * 180.34119 * 22 21 20 41 41 H 1.08000 * 119.99297 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.00350 * 179.97438 * 24 23 22 43 43 H 1.08007 * 119.99474 * 359.97438 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4805 -4.9871 0.0025 12 6 2.4748 -6.1499 0.0031 13 6 1.7213 -7.4550 0.0044 14 8 0.5085 -7.4551 0.0052 15 7 2.3952 -8.6223 0.0046 16 6 1.6628 -9.8910 0.0064 17 6 2.6571 -11.0539 0.0056 18 1 3.2850 -10.9956 0.8947 19 8 3.4769 -10.9788 -1.1624 20 6 1.9036 -12.3590 0.0069 21 6 1.4640 -12.9043 -1.1848 22 6 0.7724 -14.1013 -1.1837 23 6 0.5191 -14.7520 0.0093 24 6 0.9579 -14.2062 1.2011 25 6 1.6497 -13.0094 1.1999 26 1 -0.4851 0.8400 0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6242 -2.5567 0.8904 29 1 2.8714 -3.6038 0.8922 30 1 2.8726 -3.6046 -0.8878 31 1 0.8541 -5.0454 -0.8876 32 1 0.8535 -5.0442 0.8922 33 1 3.1014 -6.0916 0.8931 34 1 3.1014 -6.0926 -0.8869 35 1 3.3652 -8.6221 0.0036 36 1 1.0352 -9.9495 -0.8829 37 1 1.0370 -9.9480 0.8971 38 1 2.9836 -11.0246 -1.9928 39 1 1.6620 -12.3960 -2.1170 40 1 0.4337 -14.5301 -2.1153 41 1 -0.0216 -15.6869 0.0101 42 1 0.7597 -14.7144 2.1332 43 1 1.9917 -12.5824 2.1311 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806346655.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:11 Heat of formation + Delta-G solvation = -116.513935 kcal Electronic energy + Delta-G solvation = -21585.206327 eV Core-core repulsion = 18206.997943 eV Total energy + Delta-G solvation = -3378.208384 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.06326 -40.32165 -38.11660 -36.64310 -35.34623 -34.59877 -32.76957 -31.77284 -31.56530 -29.27851 -27.28750 -24.96327 -23.73723 -23.47201 -22.16129 -21.76614 -21.17797 -18.73834 -18.40345 -18.07416 -17.22770 -17.14984 -16.67749 -16.53173 -16.27683 -15.85200 -15.66918 -15.02467 -14.89353 -14.58601 -14.49129 -14.26433 -13.92484 -13.70967 -13.57243 -13.32649 -13.24903 -12.77740 -12.71630 -12.36909 -12.20005 -12.14724 -12.11449 -11.90910 -11.36740 -11.36439 -11.30601 -11.16203 -10.75785 -10.53763 -10.15505 -9.85173 -9.72161 -8.17841 -6.30191 0.33631 0.46720 1.40733 1.44935 1.52757 1.64719 2.15293 2.42721 2.81718 3.14562 3.38524 3.61830 3.76651 3.88425 3.92966 4.08607 4.12233 4.14243 4.17801 4.27112 4.53374 4.58374 4.62033 4.70192 4.74686 4.86155 4.86627 4.89770 5.01726 5.11798 5.20383 5.33908 5.34310 5.42909 5.52468 5.57610 5.58048 5.59963 5.78949 5.88741 6.06168 6.26052 6.53535 6.62883 6.88063 7.27028 7.39304 8.94132 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.048501 B = 0.001923 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.167281 B =14558.013486 C =14754.387392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.018 3.982 10 C -0.096 4.096 11 C -0.096 4.096 12 C -0.128 4.128 13 C 0.511 3.489 14 O -0.590 6.590 15 N -0.713 5.713 16 C 0.095 3.905 17 C 0.155 3.845 18 H 0.125 0.875 19 O -0.558 6.558 20 C -0.130 4.130 21 C -0.121 4.121 22 C -0.129 4.129 23 C -0.127 4.127 24 C -0.129 4.129 25 C -0.120 4.120 26 H 0.263 0.737 27 H -0.016 1.016 28 H -0.016 1.016 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.419 0.581 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.387 0.613 39 H 0.136 0.864 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.087 -32.540 -0.319 33.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.085 0.915 9 C -0.019 4.019 10 C -0.134 4.134 11 C -0.134 4.134 12 C -0.167 4.167 13 C 0.299 3.701 14 O -0.470 6.470 15 N -0.366 5.366 16 C -0.030 4.030 17 C 0.095 3.905 18 H 0.143 0.857 19 O -0.366 6.366 20 C -0.131 4.131 21 C -0.139 4.139 22 C -0.147 4.147 23 C -0.145 4.145 24 C -0.147 4.147 25 C -0.138 4.138 26 H 0.071 0.929 27 H 0.003 0.997 28 H 0.003 0.997 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.257 0.743 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.238 0.762 39 H 0.153 0.847 40 H 0.157 0.843 41 H 0.158 0.842 42 H 0.158 0.842 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.565 -32.407 0.113 33.278 hybrid contribution -0.476 0.904 -0.365 1.085 sum 7.089 -31.503 -0.251 32.291 Atomic orbital electron populations 1.70127 1.08061 1.27804 1.51808 1.26106 0.95808 1.03771 0.94792 0.85425 0.78153 0.77656 0.79335 1.18923 1.21070 1.18908 1.21731 0.93763 0.92230 1.50349 0.91546 1.19064 0.94715 0.93829 0.94306 1.21455 0.97821 0.92736 1.01351 1.21246 0.97509 0.93688 1.00990 1.21668 0.98913 0.89415 1.06750 1.21213 0.87719 0.86742 0.74433 1.90701 1.16523 1.88417 1.51386 1.45788 1.11266 1.04449 1.75143 1.22007 0.95118 0.83284 1.02574 1.20882 0.90662 0.88461 0.90498 0.85747 1.86606 1.37393 1.96143 1.16440 1.20461 1.00609 0.97430 0.94572 1.21172 0.98034 0.96686 0.98015 1.21447 0.98589 0.95404 0.99225 1.21543 0.99589 1.00726 0.92661 1.21467 0.98034 0.95973 0.99230 1.21283 0.98893 0.95720 0.97929 0.92863 0.99723 0.99726 0.92035 0.92042 0.93918 0.93899 0.86299 0.86341 0.74320 0.92041 0.91532 0.76234 0.84651 0.84259 0.84241 0.84211 0.84558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.43 13.29 21.44 0.28 -59.15 16 2 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 3 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 4 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.54 -31.75 9.11 25.60 0.23 -31.52 16 8 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 9 C 0.02 1.00 4.97 29.85 0.15 1.15 16 10 C -0.10 -3.97 5.15 30.60 0.16 -3.81 16 11 C -0.10 -3.52 4.50 30.59 0.14 -3.38 16 12 C -0.13 -3.17 5.70 29.85 0.17 -3.00 16 13 C 0.51 13.82 7.83 87.66 0.69 14.50 16 14 O -0.59 -22.17 15.98 -3.04 -0.05 -22.22 16 15 N -0.71 -12.99 5.45 -463.06 -2.52 -15.51 16 16 C 0.09 1.61 5.32 86.38 0.46 2.07 16 17 C 0.15 1.88 3.30 29.85 0.10 1.98 16 18 H 0.12 1.28 8.05 -2.39 -0.02 1.26 16 19 O -0.56 -6.85 12.88 -148.98 -1.92 -8.77 16 20 C -0.13 -1.73 5.00 -19.87 -0.10 -1.83 16 21 C -0.12 -1.51 9.33 22.27 0.21 -1.30 16 22 C -0.13 -1.52 10.05 22.27 0.22 -1.29 16 23 C -0.13 -1.46 10.05 22.27 0.22 -1.23 16 24 C -0.13 -1.53 10.05 22.27 0.22 -1.31 16 25 C -0.12 -1.54 9.68 22.27 0.22 -1.32 16 26 H 0.26 15.62 8.31 -92.70 -0.77 14.85 16 27 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 28 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 29 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 32 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 33 H 0.12 2.33 8.14 -2.39 -0.02 2.32 16 34 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.42 5.26 8.35 -92.71 -0.77 4.49 16 36 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.39 2.93 7.39 -74.06 -0.55 2.38 16 39 H 0.14 1.14 6.61 -2.91 -0.02 1.12 16 40 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 41 H 0.14 1.01 8.06 -2.91 -0.02 0.98 16 42 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 43 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -78.75 363.98 1.05 -77.70 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -0.32 Total: 11.12 kcal Atomic # 6 Polarization: -33.82 SS G_CDS: 3.55 Total: -30.28 kcal Atomic # 7 Polarization: -72.42 SS G_CDS: -2.24 Total: -74.66 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -1.97 Total: -30.98 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -78.75 1.05 -77.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806346655.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.811 kcal (2) G-P(sol) polarization free energy of solvation -78.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds