Wall clock time and date at job start Tue Mar 31 2020 07:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86810 * 119.99744 * 2 1 4 4 H 1.48501 * 109.47103 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47162 * 300.00137 * 3 2 1 6 6 H 1.48497 * 109.46915 * 60.00398 * 3 2 1 7 7 C 1.37872 * 120.00508 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00673 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99687 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47338 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46876 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46740 * 180.02562 * 12 11 10 14 14 O 1.21281 * 120.00051 * 359.97438 * 13 12 11 15 15 N 1.34779 * 119.99840 * 180.02562 * 13 12 11 16 16 C 1.46494 * 119.99921 * 179.97438 * 15 13 12 17 17 C 1.53003 * 109.47283 * 179.97438 * 16 15 13 18 18 H 1.08999 * 109.47269 * 305.00317 * 17 16 15 19 19 O 1.42903 * 109.46459 * 65.00211 * 17 16 15 20 20 C 1.50696 * 109.47222 * 184.99877 * 17 16 15 21 21 C 1.38234 * 120.00111 * 279.72695 * 20 17 16 22 22 C 1.38238 * 119.99829 * 179.78647 * 21 20 17 23 23 C 1.38239 * 119.99904 * 0.44948 * 22 21 20 24 24 C 1.38233 * 119.99728 * 359.80521 * 23 22 21 25 25 C 1.38229 * 120.00465 * 359.97438 * 24 23 22 26 26 H 0.97000 * 120.00417 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.46818 * 60.00782 * 9 7 2 28 28 H 1.08999 * 109.47284 * 300.00495 * 9 7 2 29 29 H 1.09005 * 109.46682 * 60.00533 * 10 9 7 30 30 H 1.09000 * 109.47491 * 300.00845 * 10 9 7 31 31 H 1.08995 * 109.46405 * 60.00400 * 11 10 9 32 32 H 1.08999 * 109.47130 * 300.00258 * 11 10 9 33 33 H 1.08992 * 109.47234 * 60.00089 * 12 11 10 34 34 H 1.08999 * 109.47254 * 299.99940 * 12 11 10 35 35 H 0.96999 * 119.99691 * 0.02562 * 15 13 12 36 36 H 1.09005 * 109.47040 * 60.00167 * 16 15 13 37 37 H 1.08999 * 109.47079 * 299.99869 * 16 15 13 38 38 H 0.96700 * 114.00311 * 60.00313 * 19 17 16 39 39 H 1.07998 * 120.00194 * 0.02562 * 21 20 17 40 40 H 1.08003 * 120.00038 * 180.27175 * 22 21 20 41 41 H 1.08001 * 119.99802 * 179.83174 * 23 22 21 42 42 H 1.08004 * 119.99346 * 180.02562 * 24 23 22 43 43 H 1.07997 * 120.00005 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4748 -6.1499 -0.0005 13 6 1.7213 -7.4551 -0.0018 14 8 0.5085 -7.4551 -0.0026 15 7 2.3952 -8.6223 -0.0010 16 6 1.6628 -9.8910 -0.0016 17 6 2.6570 -11.0539 -0.0011 18 1 3.3418 -10.9469 -0.8424 19 8 3.3984 -11.0460 1.2205 20 6 1.9078 -12.3554 -0.1256 21 6 1.3102 -12.9181 0.9867 22 6 0.6192 -14.1098 0.8715 23 6 0.5336 -14.7435 -0.3540 24 6 1.1357 -14.1835 -1.4652 25 6 1.8228 -12.9895 -1.3510 26 1 -0.4851 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8904 28 1 0.6247 -2.5570 0.8896 29 1 2.8720 -3.6043 0.8896 30 1 2.8722 -3.6043 -0.8904 31 1 0.8542 -5.0445 -0.8914 32 1 0.8534 -5.0451 0.8885 33 1 3.1007 -6.0922 0.8898 34 1 3.1021 -6.0921 -0.8900 35 1 3.3652 -8.6222 0.0008 36 1 1.0371 -9.9488 -0.8924 37 1 1.0352 -9.9486 0.8877 38 1 2.8518 -11.1376 2.0130 39 1 1.3799 -12.4247 1.9448 40 1 0.1485 -14.5472 1.7397 41 1 -0.0040 -15.6760 -0.4434 42 1 1.0684 -14.6785 -2.4228 43 1 2.2935 -12.5523 -2.2191 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806346657.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:16 Heat of formation + Delta-G solvation = -92.364820 kcal Electronic energy + Delta-G solvation = -21576.051841 eV Core-core repulsion = 18198.890641 eV Total energy + Delta-G solvation = -3377.161200 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.33138 -39.46194 -37.50530 -34.95623 -34.39803 -32.61746 -32.16539 -31.33223 -29.97353 -28.30763 -25.63795 -24.00178 -23.06257 -22.14635 -21.59395 -20.21760 -19.93232 -18.17566 -17.12583 -16.51568 -16.46837 -16.14167 -15.63118 -15.54983 -15.25288 -14.72829 -14.42829 -14.21457 -13.96826 -13.80001 -13.59592 -13.16935 -12.81662 -12.58555 -12.27179 -12.01529 -11.70689 -11.66628 -11.57333 -11.45168 -10.97625 -10.69817 -10.51136 -10.46602 -10.38482 -9.81751 -9.58837 -9.39367 -9.26910 -9.19780 -9.17133 -8.94461 -8.28923 -5.93454 -3.95841 0.81978 0.93398 2.73902 3.02029 3.32128 3.34486 3.41585 3.45706 3.91900 4.16877 4.31926 4.41343 4.50641 4.54843 4.65633 4.71337 4.94349 5.01840 5.07535 5.34672 5.36640 5.41509 5.43330 5.46288 5.47439 5.56823 5.89803 5.97261 6.05164 6.06328 6.17192 6.27078 6.33975 6.50354 6.57906 6.87138 7.04735 7.05763 7.22861 7.44221 7.76686 7.92610 8.08252 8.27340 8.50186 9.12195 9.67782 11.17896 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.048044 B = 0.001921 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.660002 B =14571.279629 C =14755.994054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.138 4.138 13 C 0.511 3.489 14 O -0.537 6.537 15 N -0.735 5.735 16 C 0.093 3.907 17 C 0.139 3.861 18 H 0.115 0.885 19 O -0.551 6.551 20 C -0.116 4.116 21 C -0.109 4.109 22 C -0.117 4.117 23 C -0.118 4.118 24 C -0.118 4.118 25 C -0.106 4.106 26 H 0.259 0.741 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.404 0.596 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.377 0.623 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.575 -31.879 -0.118 32.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.178 4.178 13 C 0.299 3.701 14 O -0.412 6.412 15 N -0.389 5.389 16 C -0.031 4.031 17 C 0.079 3.921 18 H 0.132 0.868 19 O -0.357 6.357 20 C -0.117 4.117 21 C -0.127 4.127 22 C -0.135 4.135 23 C -0.136 4.136 24 C -0.136 4.136 25 C -0.124 4.124 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.238 0.762 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.226 0.774 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.032 -31.683 -0.525 32.085 hybrid contribution 0.313 0.752 0.323 0.876 sum 5.345 -30.932 -0.202 31.391 Atomic orbital electron populations 1.69984 1.06043 1.26371 1.51084 1.25049 0.94845 0.99246 0.95504 0.86554 0.80082 0.83931 0.77524 1.19782 1.21073 1.21065 1.21329 0.93036 0.91197 1.50186 0.92683 1.19108 0.94085 0.91305 0.97318 1.21654 0.99072 0.93998 1.00089 1.21451 0.97024 0.92733 1.02922 1.21789 1.00075 0.91876 1.04058 1.21141 0.88433 0.85582 0.74933 1.90710 1.14288 1.87697 1.48547 1.46001 1.10489 1.05165 1.77212 1.21971 0.94659 0.83086 1.03418 1.21045 0.92571 0.89690 0.88770 0.86751 1.86633 1.37562 1.96071 1.15409 1.20360 0.99723 0.97204 0.94439 1.20899 0.97484 0.96229 0.98080 1.21153 0.98976 0.95452 0.97880 1.21232 0.99387 1.00020 0.92950 1.21182 0.97683 0.95846 0.98879 1.21030 0.99131 0.95434 0.96850 0.93119 0.96582 0.96586 0.93456 0.93471 0.91834 0.91843 0.89065 0.89118 0.76167 0.90509 0.91145 0.77431 0.86073 0.85773 0.85907 0.85761 0.85697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.74 13.29 55.43 0.74 -27.00 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 11 C -0.10 -1.88 4.50 -26.73 -0.12 -2.00 16 12 C -0.14 -1.86 5.70 -27.88 -0.16 -2.02 16 13 C 0.51 7.18 7.83 -10.98 -0.09 7.10 16 14 O -0.54 -9.89 15.98 5.56 0.09 -9.80 16 15 N -0.73 -7.36 5.50 -60.29 -0.33 -7.69 16 16 C 0.09 0.84 5.29 -4.04 -0.02 0.82 16 17 C 0.14 0.96 3.24 -27.88 -0.09 0.87 16 18 H 0.11 0.71 8.00 -51.93 -0.42 0.29 16 19 O -0.55 -3.99 13.13 -35.23 -0.46 -4.46 16 20 C -0.12 -0.84 4.97 -104.63 -0.52 -1.36 16 21 C -0.11 -0.73 9.32 -39.58 -0.37 -1.10 16 22 C -0.12 -0.75 10.05 -39.58 -0.40 -1.14 16 23 C -0.12 -0.74 10.05 -39.58 -0.40 -1.14 16 24 C -0.12 -0.76 10.05 -39.59 -0.40 -1.15 16 25 C -0.11 -0.73 9.67 -39.58 -0.38 -1.11 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 32 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 33 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.40 3.11 8.47 -40.82 -0.35 2.77 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.38 1.78 7.50 45.56 0.34 2.12 16 39 H 0.12 0.58 6.78 -52.49 -0.36 0.23 16 40 H 0.12 0.56 8.06 -52.48 -0.42 0.14 16 41 H 0.12 0.53 8.06 -52.49 -0.42 0.11 16 42 H 0.12 0.56 8.06 -52.48 -0.42 0.14 16 43 H 0.13 0.66 8.04 -52.49 -0.42 0.24 16 LS Contribution 364.47 15.07 5.49 5.49 Total: -1.00 -35.62 364.47 -9.36 -44.98 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -6.23 Total: -0.32 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -3.63 Total: -18.24 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.40 Total: -34.69 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.37 Total: -14.26 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.62 -9.36 -44.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806346657.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.387 kcal (2) G-P(sol) polarization free energy of solvation -35.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds