Wall clock time and date at job start Tue Mar 31 2020 07:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86810 * 119.99744 * 2 1 4 4 H 1.48501 * 109.47103 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47162 * 300.00137 * 3 2 1 6 6 H 1.48497 * 109.46915 * 60.00398 * 3 2 1 7 7 C 1.37872 * 120.00508 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00673 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99687 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47338 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46876 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46740 * 180.02562 * 12 11 10 14 14 O 1.21281 * 120.00051 * 359.97438 * 13 12 11 15 15 N 1.34779 * 119.99840 * 180.02562 * 13 12 11 16 16 C 1.46494 * 119.99921 * 179.97438 * 15 13 12 17 17 C 1.53003 * 109.47283 * 179.97438 * 16 15 13 18 18 H 1.08999 * 109.47269 * 305.00317 * 17 16 15 19 19 O 1.42903 * 109.46459 * 65.00211 * 17 16 15 20 20 C 1.50696 * 109.47222 * 184.99877 * 17 16 15 21 21 C 1.38234 * 120.00111 * 279.72695 * 20 17 16 22 22 C 1.38238 * 119.99829 * 179.78647 * 21 20 17 23 23 C 1.38239 * 119.99904 * 0.44948 * 22 21 20 24 24 C 1.38233 * 119.99728 * 359.80521 * 23 22 21 25 25 C 1.38229 * 120.00465 * 359.97438 * 24 23 22 26 26 H 0.97000 * 120.00417 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.46818 * 60.00782 * 9 7 2 28 28 H 1.08999 * 109.47284 * 300.00495 * 9 7 2 29 29 H 1.09005 * 109.46682 * 60.00533 * 10 9 7 30 30 H 1.09000 * 109.47491 * 300.00845 * 10 9 7 31 31 H 1.08995 * 109.46405 * 60.00400 * 11 10 9 32 32 H 1.08999 * 109.47130 * 300.00258 * 11 10 9 33 33 H 1.08992 * 109.47234 * 60.00089 * 12 11 10 34 34 H 1.08999 * 109.47254 * 299.99940 * 12 11 10 35 35 H 0.96999 * 119.99691 * 0.02562 * 15 13 12 36 36 H 1.09005 * 109.47040 * 60.00167 * 16 15 13 37 37 H 1.08999 * 109.47079 * 299.99869 * 16 15 13 38 38 H 0.96700 * 114.00311 * 60.00313 * 19 17 16 39 39 H 1.07998 * 120.00194 * 0.02562 * 21 20 17 40 40 H 1.08003 * 120.00038 * 180.27175 * 22 21 20 41 41 H 1.08001 * 119.99802 * 179.83174 * 23 22 21 42 42 H 1.08004 * 119.99346 * 180.02562 * 24 23 22 43 43 H 1.07997 * 120.00005 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4748 -6.1499 -0.0005 13 6 1.7213 -7.4551 -0.0018 14 8 0.5085 -7.4551 -0.0026 15 7 2.3952 -8.6223 -0.0010 16 6 1.6628 -9.8910 -0.0016 17 6 2.6570 -11.0539 -0.0011 18 1 3.3418 -10.9469 -0.8424 19 8 3.3984 -11.0460 1.2205 20 6 1.9078 -12.3554 -0.1256 21 6 1.3102 -12.9181 0.9867 22 6 0.6192 -14.1098 0.8715 23 6 0.5336 -14.7435 -0.3540 24 6 1.1357 -14.1835 -1.4652 25 6 1.8228 -12.9895 -1.3510 26 1 -0.4851 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8904 28 1 0.6247 -2.5570 0.8896 29 1 2.8720 -3.6043 0.8896 30 1 2.8722 -3.6043 -0.8904 31 1 0.8542 -5.0445 -0.8914 32 1 0.8534 -5.0451 0.8885 33 1 3.1007 -6.0922 0.8898 34 1 3.1021 -6.0921 -0.8900 35 1 3.3652 -8.6222 0.0008 36 1 1.0371 -9.9488 -0.8924 37 1 1.0352 -9.9486 0.8877 38 1 2.8518 -11.1376 2.0130 39 1 1.3799 -12.4247 1.9448 40 1 0.1485 -14.5472 1.7397 41 1 -0.0040 -15.6760 -0.4434 42 1 1.0684 -14.6785 -2.4228 43 1 2.2935 -12.5523 -2.2191 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806346657.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:15 Heat of formation + Delta-G solvation = -116.983676 kcal Electronic energy + Delta-G solvation = -21577.119395 eV Core-core repulsion = 18198.890641 eV Total energy + Delta-G solvation = -3378.228753 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.05951 -40.32175 -38.11119 -36.64528 -35.36519 -34.60163 -32.75810 -31.78524 -31.56611 -29.27065 -27.28638 -24.97123 -23.77682 -23.45118 -22.16644 -21.76760 -21.17802 -18.72064 -18.41272 -18.07311 -17.23397 -17.14933 -16.68448 -16.52571 -16.27288 -15.85358 -15.66647 -15.01343 -14.89689 -14.59511 -14.51126 -14.26573 -13.92711 -13.70454 -13.56317 -13.33147 -13.25441 -12.83428 -12.73265 -12.31010 -12.20905 -12.14152 -12.12722 -11.90534 -11.37209 -11.36779 -11.30050 -11.13837 -10.75126 -10.55466 -10.15763 -9.85332 -9.72880 -8.18487 -6.30639 0.33457 0.46655 1.40697 1.41716 1.55248 1.64604 2.15446 2.42307 2.81354 3.14175 3.39590 3.61567 3.75786 3.87846 3.93019 4.08579 4.12263 4.14428 4.17929 4.26856 4.53067 4.58123 4.61874 4.70124 4.74422 4.86084 4.86443 4.89797 5.01691 5.11765 5.20324 5.33873 5.34266 5.42924 5.52322 5.57699 5.58216 5.59847 5.78822 5.88672 6.06085 6.25844 6.53262 6.63160 6.88111 7.26740 7.39008 8.93945 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.048044 B = 0.001921 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.660002 B =14571.279629 C =14755.994054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.970 3.030 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.017 3.983 10 C -0.096 4.096 11 C -0.096 4.096 12 C -0.128 4.128 13 C 0.511 3.489 14 O -0.590 6.590 15 N -0.714 5.714 16 C 0.095 3.905 17 C 0.154 3.846 18 H 0.125 0.875 19 O -0.559 6.559 20 C -0.130 4.130 21 C -0.121 4.121 22 C -0.129 4.129 23 C -0.127 4.127 24 C -0.129 4.129 25 C -0.119 4.119 26 H 0.263 0.737 27 H -0.015 1.015 28 H -0.015 1.015 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.419 0.581 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.387 0.613 39 H 0.135 0.865 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.081 -32.592 -0.113 33.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.795 3.205 4 H -0.181 1.181 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.020 4.020 10 C -0.134 4.134 11 C -0.134 4.134 12 C -0.168 4.168 13 C 0.299 3.701 14 O -0.470 6.470 15 N -0.367 5.367 16 C -0.030 4.030 17 C 0.095 3.905 18 H 0.143 0.857 19 O -0.366 6.366 20 C -0.131 4.131 21 C -0.139 4.139 22 C -0.147 4.147 23 C -0.145 4.145 24 C -0.147 4.147 25 C -0.137 4.137 26 H 0.071 0.929 27 H 0.003 0.997 28 H 0.003 0.997 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.256 0.744 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.238 0.762 39 H 0.153 0.847 40 H 0.157 0.843 41 H 0.158 0.842 42 H 0.158 0.842 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.594 -32.438 -0.513 33.319 hybrid contribution -0.521 0.899 0.332 1.091 sum 7.072 -31.539 -0.181 32.323 Atomic orbital electron populations 1.70138 1.08063 1.27678 1.51973 1.26107 0.95806 1.03781 0.94823 0.85319 0.79185 0.78367 0.77672 1.18088 1.20479 1.20468 1.21792 0.93775 0.92218 1.50082 0.91540 1.19074 0.94726 0.93844 0.94327 1.21455 0.97817 0.92734 1.01356 1.21246 0.97510 0.93685 1.00993 1.21670 0.98917 0.89415 1.06755 1.21214 0.87725 0.86745 0.74423 1.90700 1.16519 1.88417 1.51376 1.45803 1.11233 1.04490 1.75162 1.22019 0.95124 0.83272 1.02542 1.20886 0.91978 0.88561 0.89092 0.85743 1.86610 1.38092 1.95989 1.15954 1.20455 1.00334 0.97433 0.94860 1.21176 0.97437 0.96574 0.98725 1.21447 0.99040 0.95541 0.98657 1.21547 0.99299 1.00709 0.92929 1.21470 0.97547 0.95914 0.99779 1.21293 0.99380 0.95805 0.97266 0.92864 0.99696 0.99705 0.92046 0.92031 0.93891 0.93918 0.86346 0.86281 0.74355 0.91638 0.91908 0.76241 0.84705 0.84275 0.84230 0.84186 0.84515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.44 13.29 21.44 0.28 -59.15 16 2 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 3 Si 0.97 45.12 29.54 68.60 2.03 47.14 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 7 C -0.54 -31.63 9.11 25.60 0.23 -31.40 16 8 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 9 C 0.02 0.97 4.97 29.85 0.15 1.12 16 10 C -0.10 -3.97 5.15 30.60 0.16 -3.81 16 11 C -0.10 -3.52 4.50 30.59 0.14 -3.38 16 12 C -0.13 -3.17 5.70 29.85 0.17 -3.00 16 13 C 0.51 13.82 7.83 87.66 0.69 14.51 16 14 O -0.59 -22.16 15.98 -3.03 -0.05 -22.21 16 15 N -0.71 -13.00 5.50 -463.06 -2.55 -15.55 16 16 C 0.09 1.62 5.29 86.38 0.46 2.08 16 17 C 0.15 1.89 3.24 29.85 0.10 1.98 16 18 H 0.12 1.27 8.00 -2.39 -0.02 1.25 16 19 O -0.56 -7.00 13.13 -148.98 -1.96 -8.95 16 20 C -0.13 -1.73 4.97 -19.87 -0.10 -1.83 16 21 C -0.12 -1.51 9.32 22.27 0.21 -1.30 16 22 C -0.13 -1.52 10.05 22.27 0.22 -1.30 16 23 C -0.13 -1.45 10.05 22.27 0.22 -1.23 16 24 C -0.13 -1.52 10.05 22.27 0.22 -1.30 16 25 C -0.12 -1.52 9.67 22.27 0.22 -1.31 16 26 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 27 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 28 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 29 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 30 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 32 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 33 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.42 5.21 8.47 -92.71 -0.79 4.42 16 36 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.39 2.99 7.50 -74.06 -0.56 2.44 16 39 H 0.14 1.16 6.78 -2.91 -0.02 1.14 16 40 H 0.14 1.10 8.06 -2.91 -0.02 1.08 16 41 H 0.14 1.00 8.06 -2.91 -0.02 0.98 16 42 H 0.14 1.08 8.06 -2.91 -0.02 1.06 16 43 H 0.14 1.28 8.04 -2.91 -0.02 1.26 16 Total: -1.00 -78.98 364.47 0.96 -78.02 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -0.34 Total: 10.89 kcal Atomic # 6 Polarization: -33.73 SS G_CDS: 3.54 Total: -30.19 kcal Atomic # 7 Polarization: -72.44 SS G_CDS: -2.26 Total: -74.70 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -2.00 Total: -31.16 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -78.98 0.96 -78.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806346657.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.967 kcal (2) G-P(sol) polarization free energy of solvation -78.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds