Wall clock time and date at job start Tue Mar 31 2020 08:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00205 * 2 1 4 4 H 1.48493 * 109.47353 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47182 * 300.00744 * 3 2 1 6 6 H 1.48504 * 109.47116 * 60.00444 * 3 2 1 7 7 C 1.37877 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00277 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99751 * 0.26586 * 7 2 1 10 10 H 1.08998 * 109.46964 * 299.73525 * 9 7 2 11 11 O 1.42902 * 109.46574 * 59.72933 * 9 7 2 12 12 C 1.52995 * 109.47240 * 179.72713 * 9 7 2 13 13 N 1.46896 * 109.47337 * 179.97438 * 12 9 7 14 14 C 1.46899 * 110.99916 * 169.99995 * 13 12 9 15 15 C 1.50695 * 109.47222 * 283.83078 * 14 13 12 16 16 C 1.38290 * 119.97572 * 275.89718 * 15 14 13 17 17 C 1.38241 * 120.11163 * 179.72475 * 16 15 14 18 18 C 1.38168 * 120.05476 * 0.55589 * 17 16 15 19 19 C 1.38707 * 119.94768 * 359.71723 * 18 17 16 20 20 O 1.35892 * 120.05912 * 179.97438 * 19 18 17 21 21 C 1.38130 * 119.97000 * 96.17628 * 15 14 13 22 22 C 1.46893 * 111.00155 * 293.95936 * 13 12 9 23 23 C 1.53000 * 109.47348 * 163.92035 * 22 13 12 24 24 C 1.53001 * 117.49659 * 245.35297 * 23 22 13 25 25 C 1.52995 * 117.50389 * 176.72857 * 23 22 13 26 26 H 0.97005 * 119.99586 * 359.97438 * 1 2 3 27 27 H 0.96697 * 114.00451 * 60.00259 * 11 9 7 28 28 H 1.09000 * 109.47442 * 300.00685 * 12 9 7 29 29 H 1.09003 * 109.46643 * 60.00064 * 12 9 7 30 30 H 1.08996 * 109.47196 * 43.84010 * 14 13 12 31 31 H 1.09008 * 109.46771 * 163.83625 * 14 13 12 32 32 H 1.08001 * 119.93998 * 359.97438 * 16 15 14 33 33 H 1.07999 * 119.97518 * 180.25503 * 17 16 15 34 34 H 1.08006 * 120.02948 * 179.75077 * 18 17 16 35 35 H 0.96698 * 114.00163 * 270.02442 * 20 19 18 36 36 H 1.07994 * 120.02607 * 359.97438 * 21 15 14 37 37 H 1.09008 * 109.47200 * 283.91603 * 22 13 12 38 38 H 1.08998 * 109.47699 * 43.91552 * 22 13 12 39 39 H 1.09003 * 115.54729 * 31.05310 * 23 22 13 40 40 H 1.08996 * 117.50432 * 359.97438 * 24 23 22 41 41 H 1.09003 * 117.49857 * 145.01916 * 24 23 22 42 42 H 1.09001 * 117.50254 * 214.97745 * 25 23 22 43 43 H 1.09002 * 117.49537 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0072 10 1 0.6244 -2.5614 0.8825 11 8 0.4294 -2.5687 -1.1743 12 6 2.2452 -3.6620 -0.0133 13 7 1.5108 -4.9342 -0.0191 14 6 2.4171 -6.0642 -0.2632 15 6 2.7813 -6.1095 -1.7247 16 6 1.9416 -6.7367 -2.6269 17 6 2.2702 -6.7749 -3.9692 18 6 3.4445 -6.1962 -4.4109 19 6 4.2912 -5.5714 -3.5072 20 8 5.4470 -5.0020 -3.9391 21 6 3.9564 -5.5294 -2.1613 22 6 0.7658 -5.1178 1.2335 23 6 -0.2816 -6.2175 1.0476 24 6 -1.7544 -5.8119 1.1330 25 6 -1.1145 -6.6136 2.2683 26 1 -0.4850 0.8401 0.0004 27 1 0.9214 -2.5191 -2.0053 28 1 2.8719 -3.5997 -0.9029 29 1 2.8719 -3.6088 0.8770 30 1 3.3211 -5.9402 0.3330 31 1 1.9220 -6.9941 0.0168 32 1 1.0257 -7.1939 -2.2828 33 1 1.6108 -7.2617 -4.6725 34 1 3.7028 -6.2299 -5.4591 35 1 6.2063 -5.6008 -3.9346 36 1 4.6138 -5.0433 -1.4558 37 1 1.4555 -5.4035 2.0279 38 1 0.2696 -4.1850 1.5013 39 1 -0.0162 -7.0050 0.3423 40 1 -1.9772 -4.7619 1.3221 41 1 -2.4583 -6.3327 0.4839 42 1 -1.3974 -7.6617 2.3660 43 1 -0.9165 -6.0904 3.2039 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809574802.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:28:26 Heat of formation + Delta-G solvation = -37.311036 kcal Electronic energy + Delta-G solvation = -23664.068535 eV Core-core repulsion = 20289.294647 eV Total energy + Delta-G solvation = -3374.773889 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 5.17 seconds Orbital eigenvalues (eV) -39.74103 -38.21482 -36.73725 -36.05369 -34.51518 -32.01602 -31.39290 -29.72927 -28.50922 -26.74450 -25.47347 -22.94992 -22.45443 -22.08465 -21.16860 -20.47744 -19.56982 -17.92084 -16.88721 -16.26518 -15.84711 -15.64455 -15.19516 -14.70991 -14.60339 -14.45699 -14.00971 -13.79450 -13.59849 -13.25456 -12.95012 -12.50500 -12.41068 -11.99117 -11.93863 -11.63893 -11.28952 -11.25359 -11.14400 -10.91607 -10.80913 -10.69424 -10.58810 -10.31812 -10.02086 -9.94416 -9.62678 -8.90869 -8.72527 -8.50993 -8.43982 -8.02161 -7.61174 -5.95975 -4.13602 1.39710 1.46290 3.29503 3.37791 3.41363 3.71757 4.04316 4.23864 4.40849 4.61780 4.94484 4.98488 5.07920 5.20154 5.26194 5.30476 5.32077 5.42579 5.53610 5.66730 5.72616 5.74734 5.83911 5.92629 5.99985 6.02753 6.11648 6.20246 6.24242 6.34916 6.43529 6.52247 6.52768 6.57252 6.62994 6.77747 6.88495 6.94298 7.56345 7.64332 7.72118 7.82876 7.93131 8.25933 8.90182 9.52244 9.68974 11.08063 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.009688 B = 0.006236 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2889.377968 B = 4489.285787 C = 6693.443497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.080 3.920 3 Si 0.886 3.114 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.572 4.572 8 H 0.054 0.946 9 C 0.239 3.761 10 H 0.053 0.947 11 O -0.551 6.551 12 C 0.028 3.972 13 N -0.516 5.516 14 C 0.087 3.913 15 C -0.046 4.046 16 C -0.103 4.103 17 C -0.107 4.107 18 C -0.151 4.151 19 C 0.101 3.899 20 O -0.499 6.499 21 C -0.136 4.136 22 C 0.084 3.916 23 C -0.137 4.137 24 C -0.169 4.169 25 C -0.190 4.190 26 H 0.259 0.741 27 H 0.342 0.658 28 H 0.067 0.933 29 H 0.024 0.976 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.384 0.616 36 H 0.124 0.876 37 H 0.028 0.972 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.847 -16.694 -2.472 17.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.126 4.126 3 Si 0.714 3.286 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.611 4.611 8 H 0.072 0.928 9 C 0.181 3.819 10 H 0.070 0.930 11 O -0.353 6.353 12 C -0.099 4.099 13 N -0.239 5.239 14 C -0.041 4.041 15 C -0.047 4.047 16 C -0.122 4.122 17 C -0.125 4.125 18 C -0.170 4.170 19 C 0.057 3.943 20 O -0.308 6.308 21 C -0.155 4.155 22 C -0.044 4.044 23 C -0.155 4.155 24 C -0.206 4.206 25 C -0.228 4.228 26 H 0.069 0.931 27 H 0.185 0.815 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.097 0.903 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.239 0.761 36 H 0.142 0.858 37 H 0.046 0.954 38 H 0.107 0.893 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.509 -16.105 -2.439 16.663 hybrid contribution 1.902 0.709 0.276 2.048 sum 5.410 -15.396 -2.163 16.462 Atomic orbital electron populations 1.70093 1.05858 1.26173 1.47288 1.25002 0.94661 0.98985 0.93909 0.86659 0.80277 0.84044 0.77657 1.19758 1.20856 1.20944 1.21701 0.93151 0.91685 1.54560 0.92807 1.19297 0.87662 0.88446 0.86470 0.92977 1.86547 1.37564 1.96281 1.14880 1.23151 0.97417 0.89721 0.99601 1.61925 1.26411 1.01404 1.34162 1.21109 0.95638 0.95919 0.91447 1.19661 0.93168 0.95925 0.95952 1.20986 0.98850 0.99604 0.92745 1.20971 0.96239 0.99476 0.95786 1.21332 0.96299 0.99766 0.99618 1.18413 0.88455 0.96095 0.91374 1.84875 1.17830 1.40417 1.87690 1.21340 0.98534 1.00627 0.95018 1.21717 0.94469 0.98387 0.89819 1.22210 0.92830 1.00593 0.99903 1.22952 0.95689 1.00980 1.00969 1.22960 1.05847 1.00242 0.93739 0.93130 0.81528 0.91414 0.95782 0.94513 0.90342 0.85911 0.85922 0.85947 0.76088 0.85837 0.95373 0.89342 0.88158 0.88372 0.89366 0.89387 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.70 12.83 55.43 0.71 -24.99 16 2 C 0.08 2.29 5.40 -17.82 -0.10 2.19 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.57 -15.98 8.76 -34.44 -0.30 -16.29 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.24 6.11 2.74 -27.88 -0.08 6.04 16 10 H 0.05 1.45 6.28 -51.93 -0.33 1.13 16 11 O -0.55 -14.72 12.59 -35.23 -0.44 -15.16 16 12 C 0.03 0.59 4.38 -3.83 -0.02 0.57 16 13 N -0.52 -9.16 4.24 -236.08 -1.00 -10.16 16 14 C 0.09 1.26 4.92 -4.98 -0.02 1.24 16 15 C -0.05 -0.67 5.03 -104.64 -0.53 -1.20 16 16 C -0.10 -1.39 9.72 -39.56 -0.38 -1.77 16 17 C -0.11 -1.31 10.04 -39.61 -0.40 -1.71 16 18 C -0.15 -1.92 9.99 -39.43 -0.39 -2.32 16 19 C 0.10 1.40 6.70 -39.22 -0.26 1.14 16 20 O -0.50 -6.37 13.50 -19.40 -0.26 -6.64 16 21 C -0.14 -2.00 8.38 -39.43 -0.33 -2.33 16 22 C 0.08 1.41 5.11 -3.83 -0.02 1.39 16 23 C -0.14 -1.96 5.58 -90.62 -0.51 -2.47 16 24 C -0.17 -2.43 10.18 -26.73 -0.27 -2.70 16 25 C -0.19 -2.36 10.25 -26.73 -0.27 -2.64 16 26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.34 8.56 9.04 45.56 0.41 8.97 16 28 H 0.07 1.44 6.40 -51.93 -0.33 1.11 16 29 H 0.02 0.50 8.12 -51.93 -0.42 0.08 16 30 H 0.04 0.52 7.89 -51.93 -0.41 0.11 16 31 H 0.08 1.01 6.44 -51.92 -0.33 0.67 16 32 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 35 H 0.38 2.78 9.06 45.56 0.41 3.19 16 36 H 0.12 1.80 8.01 -52.49 -0.42 1.38 16 37 H 0.03 0.44 8.05 -51.92 -0.42 0.02 16 38 H 0.09 1.74 5.68 -51.93 -0.29 1.44 16 39 H 0.10 1.36 6.88 -51.93 -0.36 1.00 16 40 H 0.10 1.59 8.04 -51.93 -0.42 1.17 16 41 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 355.75 15.07 5.36 5.36 Total: -1.00 -32.32 355.75 -9.52 -41.85 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -4.99 Total: 14.03 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -3.88 Total: -20.85 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: -0.29 Total: -35.15 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.71 Total: -21.80 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.32 -9.52 -41.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809574802.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.535 kcal (2) G-P(sol) polarization free energy of solvation -32.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.17 seconds