Wall clock time and date at job start Tue Mar 31 2020 08:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00205 * 2 1 4 4 H 1.48493 * 109.47353 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47182 * 300.00744 * 3 2 1 6 6 H 1.48504 * 109.47116 * 60.00444 * 3 2 1 7 7 C 1.37877 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00277 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99751 * 0.26586 * 7 2 1 10 10 H 1.08998 * 109.46964 * 299.73525 * 9 7 2 11 11 O 1.42902 * 109.46574 * 59.72933 * 9 7 2 12 12 C 1.52995 * 109.47240 * 179.72713 * 9 7 2 13 13 N 1.46896 * 109.47337 * 179.97438 * 12 9 7 14 14 C 1.46899 * 110.99916 * 169.99995 * 13 12 9 15 15 C 1.50695 * 109.47222 * 283.83078 * 14 13 12 16 16 C 1.38290 * 119.97572 * 275.89718 * 15 14 13 17 17 C 1.38241 * 120.11163 * 179.72475 * 16 15 14 18 18 C 1.38168 * 120.05476 * 0.55589 * 17 16 15 19 19 C 1.38707 * 119.94768 * 359.71723 * 18 17 16 20 20 O 1.35892 * 120.05912 * 179.97438 * 19 18 17 21 21 C 1.38130 * 119.97000 * 96.17628 * 15 14 13 22 22 C 1.46893 * 111.00155 * 293.95936 * 13 12 9 23 23 C 1.53000 * 109.47348 * 163.92035 * 22 13 12 24 24 C 1.53001 * 117.49659 * 245.35297 * 23 22 13 25 25 C 1.52995 * 117.50389 * 176.72857 * 23 22 13 26 26 H 0.97005 * 119.99586 * 359.97438 * 1 2 3 27 27 H 0.96697 * 114.00451 * 60.00259 * 11 9 7 28 28 H 1.09000 * 109.47442 * 300.00685 * 12 9 7 29 29 H 1.09003 * 109.46643 * 60.00064 * 12 9 7 30 30 H 1.08996 * 109.47196 * 43.84010 * 14 13 12 31 31 H 1.09008 * 109.46771 * 163.83625 * 14 13 12 32 32 H 1.08001 * 119.93998 * 359.97438 * 16 15 14 33 33 H 1.07999 * 119.97518 * 180.25503 * 17 16 15 34 34 H 1.08006 * 120.02948 * 179.75077 * 18 17 16 35 35 H 0.96698 * 114.00163 * 270.02442 * 20 19 18 36 36 H 1.07994 * 120.02607 * 359.97438 * 21 15 14 37 37 H 1.09008 * 109.47200 * 283.91603 * 22 13 12 38 38 H 1.08998 * 109.47699 * 43.91552 * 22 13 12 39 39 H 1.09003 * 115.54729 * 31.05310 * 23 22 13 40 40 H 1.08996 * 117.50432 * 359.97438 * 24 23 22 41 41 H 1.09003 * 117.49857 * 145.01916 * 24 23 22 42 42 H 1.09001 * 117.50254 * 214.97745 * 25 23 22 43 43 H 1.09002 * 117.49537 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0072 10 1 0.6244 -2.5614 0.8825 11 8 0.4294 -2.5687 -1.1743 12 6 2.2452 -3.6620 -0.0133 13 7 1.5108 -4.9342 -0.0191 14 6 2.4171 -6.0642 -0.2632 15 6 2.7813 -6.1095 -1.7247 16 6 1.9416 -6.7367 -2.6269 17 6 2.2702 -6.7749 -3.9692 18 6 3.4445 -6.1962 -4.4109 19 6 4.2912 -5.5714 -3.5072 20 8 5.4470 -5.0020 -3.9391 21 6 3.9564 -5.5294 -2.1613 22 6 0.7658 -5.1178 1.2335 23 6 -0.2816 -6.2175 1.0476 24 6 -1.7544 -5.8119 1.1330 25 6 -1.1145 -6.6136 2.2683 26 1 -0.4850 0.8401 0.0004 27 1 0.9214 -2.5191 -2.0053 28 1 2.8719 -3.5997 -0.9029 29 1 2.8719 -3.6088 0.8770 30 1 3.3211 -5.9402 0.3330 31 1 1.9220 -6.9941 0.0168 32 1 1.0257 -7.1939 -2.2828 33 1 1.6108 -7.2617 -4.6725 34 1 3.7028 -6.2299 -5.4591 35 1 6.2063 -5.6008 -3.9346 36 1 4.6138 -5.0433 -1.4558 37 1 1.4555 -5.4035 2.0279 38 1 0.2696 -4.1850 1.5013 39 1 -0.0162 -7.0050 0.3423 40 1 -1.9772 -4.7619 1.3221 41 1 -2.4583 -6.3327 0.4839 42 1 -1.3974 -7.6617 2.3660 43 1 -0.9165 -6.0904 3.2039 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809574802.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:28:17 Heat of formation + Delta-G solvation = -60.732493 kcal Electronic energy + Delta-G solvation = -23665.084166 eV Core-core repulsion = 20289.294647 eV Total energy + Delta-G solvation = -3375.789519 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.80376 -39.51960 -37.80226 -37.61214 -36.10237 -34.21357 -32.54216 -30.86298 -30.23786 -28.01181 -27.24992 -24.54311 -23.47625 -23.15756 -22.37370 -22.04583 -20.91842 -19.16242 -18.77441 -17.26581 -17.12146 -16.80220 -16.66867 -16.41885 -16.21172 -15.85699 -15.46601 -15.25344 -14.98260 -14.53885 -14.35436 -14.22558 -13.56193 -13.33580 -13.15310 -13.02521 -12.88017 -12.72346 -12.63599 -12.44876 -12.35825 -12.27065 -12.02946 -11.90826 -11.34286 -11.15439 -10.93380 -10.80848 -10.66138 -10.08615 -9.76141 -9.45176 -9.07024 -8.14202 -6.39719 0.38455 0.43886 1.36525 1.38147 1.50068 2.36493 2.65554 2.93805 3.11522 3.23291 3.39134 3.86504 3.88631 3.98911 4.07022 4.19042 4.25115 4.30255 4.36487 4.38597 4.50362 4.53897 4.63934 4.65216 4.69663 4.79811 4.83180 4.89774 5.03336 5.05195 5.10061 5.11703 5.32625 5.38880 5.50754 5.53536 5.59784 5.71853 5.76637 5.99307 6.03458 6.22621 6.30889 6.73347 6.90732 7.33703 7.59694 8.90185 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.009688 B = 0.006236 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2889.377968 B = 4489.285787 C = 6693.443497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.028 3.972 3 Si 0.956 3.044 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.276 1.276 7 C -0.588 4.588 8 H 0.053 0.947 9 C 0.241 3.759 10 H 0.022 0.978 11 O -0.565 6.565 12 C 0.050 3.950 13 N -0.523 5.523 14 C 0.091 3.909 15 C -0.060 4.060 16 C -0.113 4.113 17 C -0.104 4.104 18 C -0.155 4.155 19 C 0.093 3.907 20 O -0.513 6.513 21 C -0.155 4.155 22 C 0.085 3.915 23 C -0.142 4.142 24 C -0.186 4.186 25 C -0.163 4.163 26 H 0.261 0.739 27 H 0.347 0.653 28 H 0.064 0.936 29 H 0.021 0.979 30 H 0.039 0.961 31 H 0.102 0.898 32 H 0.134 0.866 33 H 0.151 0.849 34 H 0.142 0.858 35 H 0.407 0.593 36 H 0.115 0.885 37 H 0.040 0.960 38 H 0.050 0.950 39 H 0.117 0.883 40 H 0.067 0.933 41 H 0.103 0.897 42 H 0.117 0.883 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.514 -18.224 -3.123 19.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.174 4.174 3 Si 0.781 3.219 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.627 4.627 8 H 0.072 0.928 9 C 0.183 3.817 10 H 0.039 0.961 11 O -0.367 6.367 12 C -0.078 4.078 13 N -0.246 5.246 14 C -0.036 4.036 15 C -0.061 4.061 16 C -0.131 4.131 17 C -0.122 4.122 18 C -0.174 4.174 19 C 0.049 3.951 20 O -0.326 6.326 21 C -0.174 4.174 22 C -0.042 4.042 23 C -0.161 4.161 24 C -0.223 4.223 25 C -0.201 4.201 26 H 0.070 0.930 27 H 0.190 0.810 28 H 0.082 0.918 29 H 0.039 0.961 30 H 0.058 0.942 31 H 0.120 0.880 32 H 0.152 0.848 33 H 0.168 0.832 34 H 0.160 0.840 35 H 0.265 0.735 36 H 0.133 0.867 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.135 0.865 40 H 0.086 0.914 41 H 0.121 0.879 42 H 0.136 0.864 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.203 -17.660 -3.084 18.413 hybrid contribution 1.708 1.147 0.450 2.106 sum 5.910 -16.513 -2.634 17.735 Atomic orbital electron populations 1.70226 1.07535 1.27194 1.48464 1.25850 0.95472 1.02719 0.93406 0.85564 0.79097 0.79413 0.77836 1.18979 1.20439 1.20184 1.22076 0.93325 0.93077 1.54197 0.92829 1.19146 0.87667 0.89854 0.84996 0.96071 1.86502 1.38347 1.96441 1.15412 1.22664 0.95913 0.90020 0.99191 1.61840 1.26902 1.01120 1.34751 1.21155 0.95289 0.95258 0.91946 1.19709 0.93588 0.96783 0.95996 1.21204 0.99077 0.99600 0.93226 1.21314 0.96282 0.98724 0.95846 1.21611 0.96136 0.99192 1.00446 1.18571 0.89123 0.96110 0.91320 1.84806 1.18542 1.41711 1.87523 1.21400 0.98951 1.01535 0.95563 1.21654 0.95088 0.97638 0.89843 1.22166 0.91795 1.00172 1.01936 1.22937 0.96243 0.99970 1.03175 1.23044 1.02974 1.01386 0.92649 0.93014 0.80971 0.91766 0.96128 0.94246 0.88028 0.84768 0.83162 0.83984 0.73468 0.86681 0.94227 0.93202 0.86522 0.91397 0.87892 0.86439 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.02 12.83 21.45 0.28 -54.75 16 2 C 0.03 1.62 5.40 84.65 0.46 2.07 16 3 Si 0.96 44.75 29.54 68.60 2.03 46.77 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.59 -33.58 8.76 25.60 0.22 -33.35 16 8 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 9 C 0.24 12.79 2.74 29.85 0.08 12.87 16 10 H 0.02 1.27 6.28 -2.39 -0.01 1.25 16 11 O -0.56 -31.12 12.59 -148.98 -1.88 -33.00 16 12 C 0.05 2.14 4.38 86.30 0.38 2.52 16 13 N -0.52 -18.60 4.24 -900.83 -3.82 -22.42 16 14 C 0.09 2.54 4.92 85.56 0.42 2.96 16 15 C -0.06 -1.68 5.03 -19.88 -0.10 -1.78 16 16 C -0.11 -2.81 9.72 22.28 0.22 -2.59 16 17 C -0.10 -2.30 10.04 22.25 0.22 -2.07 16 18 C -0.16 -3.62 9.99 22.37 0.22 -3.40 16 19 C 0.09 2.49 6.70 22.51 0.15 2.64 16 20 O -0.51 -12.53 13.50 -92.34 -1.25 -13.78 16 21 C -0.16 -4.50 8.38 22.37 0.19 -4.31 16 22 C 0.09 2.90 5.11 86.30 0.44 3.34 16 23 C -0.14 -3.91 5.58 -10.79 -0.06 -3.97 16 24 C -0.19 -5.29 10.18 30.60 0.31 -4.98 16 25 C -0.16 -3.72 10.25 30.59 0.31 -3.41 16 26 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 27 H 0.35 17.84 9.04 -74.06 -0.67 17.17 16 28 H 0.06 2.78 6.40 -2.39 -0.02 2.76 16 29 H 0.02 0.88 8.12 -2.39 -0.02 0.86 16 30 H 0.04 1.09 7.89 -2.39 -0.02 1.07 16 31 H 0.10 2.37 6.44 -2.38 -0.02 2.35 16 32 H 0.13 2.97 8.06 -2.91 -0.02 2.95 16 33 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 34 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 35 H 0.41 5.33 9.06 -74.06 -0.67 4.66 16 36 H 0.12 3.40 8.01 -2.91 -0.02 3.38 16 37 H 0.04 1.23 8.05 -2.38 -0.02 1.21 16 38 H 0.05 2.08 5.68 -2.39 -0.01 2.06 16 39 H 0.12 2.84 6.88 -2.39 -0.02 2.83 16 40 H 0.07 2.33 8.04 -2.39 -0.02 2.31 16 41 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 42 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -70.52 355.75 -1.49 -72.01 By element: Atomic # 1 Polarization: 38.95 SS G_CDS: -0.32 Total: 38.63 kcal Atomic # 6 Polarization: -36.94 SS G_CDS: 3.47 Total: -33.47 kcal Atomic # 7 Polarization: -73.63 SS G_CDS: -3.55 Total: -77.17 kcal Atomic # 8 Polarization: -43.65 SS G_CDS: -3.12 Total: -46.78 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -70.52 -1.49 -72.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809574802.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.282 kcal (2) G-P(sol) polarization free energy of solvation -70.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds