Wall clock time and date at job start Tue Mar 31 2020 07:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99814 * 2 1 4 4 H 1.48500 * 109.46884 * 269.99903 * 3 2 1 5 5 H 1.48507 * 109.46815 * 29.99575 * 3 2 1 6 6 H 1.48495 * 109.47286 * 149.99586 * 3 2 1 7 7 C 1.37869 * 120.00472 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99837 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00320 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47201 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47201 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99875 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00007 * 180.02562 * 11 10 9 14 14 C 1.46507 * 119.99827 * 179.97438 * 13 11 10 15 15 H 1.08992 * 109.47126 * 324.99882 * 14 13 11 16 16 C 1.53001 * 109.46797 * 84.99889 * 14 13 11 17 17 C 1.53000 * 109.47266 * 294.99617 * 16 14 13 18 18 O 1.42901 * 109.47208 * 180.02562 * 17 16 14 19 19 C 1.52996 * 109.47205 * 204.99635 * 14 13 11 20 20 C 1.50702 * 109.47203 * 65.00245 * 19 14 13 21 21 C 1.38234 * 119.99895 * 269.72772 * 20 19 14 22 22 C 1.38240 * 120.00062 * 180.32314 * 21 20 19 23 23 C 1.38235 * 119.99708 * 359.94741 * 22 21 20 24 24 C 1.38234 * 120.00204 * 0.02562 * 23 22 21 25 25 C 1.38230 * 119.99885 * 0.02562 * 24 23 22 26 26 H 0.96998 * 120.00221 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46946 * 60.00005 * 9 7 2 28 28 H 1.08995 * 109.47274 * 299.99819 * 9 7 2 29 29 H 1.09005 * 109.46950 * 60.00272 * 10 9 7 30 30 H 1.08997 * 109.47589 * 300.00170 * 10 9 7 31 31 H 0.96998 * 120.00304 * 359.97438 * 13 11 10 32 32 H 1.09003 * 109.47262 * 54.99847 * 16 14 13 33 33 H 1.09008 * 109.46910 * 174.99935 * 16 14 13 34 34 H 1.08994 * 109.47383 * 300.00342 * 17 16 14 35 35 H 1.09003 * 109.46466 * 60.00450 * 17 16 14 36 36 H 0.96692 * 114.00056 * 180.02562 * 18 17 16 37 37 H 1.09003 * 109.47252 * 305.00423 * 19 14 13 38 38 H 1.09001 * 109.47630 * 185.00477 * 19 14 13 39 39 H 1.08001 * 120.00279 * 0.27436 * 21 20 19 40 40 H 1.07997 * 119.99852 * 179.97438 * 22 21 20 41 41 H 1.08000 * 119.99766 * 180.02562 * 23 22 21 42 42 H 1.07992 * 119.99701 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.00356 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6363 0.0023 11 6 5.5287 -2.6363 0.0022 12 8 6.1350 -1.5859 0.0018 13 7 6.2026 -3.8034 0.0026 14 6 7.6676 -3.8033 0.0020 15 1 8.0306 -2.9619 -0.5880 16 6 8.1782 -3.6767 1.4388 17 6 7.7736 -2.3144 2.0056 18 8 8.2510 -2.1959 3.3473 19 6 8.1775 -5.1110 -0.6069 20 6 7.7782 -5.1784 -2.0586 21 6 6.5749 -5.7559 -2.4183 22 6 6.2117 -5.8237 -3.7504 23 6 7.0514 -5.3131 -4.7226 24 6 8.2545 -4.7352 -4.3628 25 6 8.6181 -4.6683 -3.0308 26 1 -0.4850 0.8400 -0.0004 27 1 3.8746 -0.6798 0.8912 28 1 3.8753 -0.6803 -0.8888 29 1 3.6587 -3.1508 -0.8876 30 1 3.6580 -3.1497 0.8924 31 1 5.7176 -4.6435 0.0033 32 1 7.7438 -4.4680 2.0498 33 1 9.2646 -3.7658 1.4475 34 1 8.2079 -1.5231 1.3946 35 1 6.6873 -2.2254 1.9968 36 1 8.0299 -1.3551 3.7705 37 1 7.7431 -5.9550 -0.0711 38 1 9.2638 -5.1500 -0.5267 39 1 5.9188 -6.1547 -1.6588 40 1 5.2718 -6.2752 -4.0315 41 1 6.7675 -5.3658 -5.7633 42 1 8.9106 -4.3367 -5.1223 43 1 9.5582 -4.2172 -2.7496 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812564534.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:33 Heat of formation + Delta-G solvation = -85.258813 kcal Electronic energy + Delta-G solvation = -23236.433518 eV Core-core repulsion = 19859.580458 eV Total energy + Delta-G solvation = -3376.853060 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.10704 -39.07198 -36.95898 -35.78569 -33.48741 -32.48043 -31.61130 -31.03351 -30.76415 -27.90909 -26.09532 -23.75757 -22.75212 -21.78999 -21.22051 -20.57138 -19.69050 -17.37488 -17.19754 -16.91078 -16.50335 -15.91310 -15.38891 -15.21272 -14.83228 -14.54939 -14.13078 -13.97214 -13.75853 -13.54476 -13.28330 -13.05705 -12.71813 -12.56811 -12.35214 -12.15995 -12.01405 -11.45407 -11.40965 -11.15136 -11.10242 -10.98275 -10.80544 -10.15656 -10.05963 -9.80226 -9.77683 -9.23395 -9.16902 -9.05909 -8.91952 -8.77031 -8.51611 -6.03862 -4.02527 1.22168 1.28671 3.10781 3.36417 3.42292 3.43981 3.53009 3.62978 4.15510 4.49593 4.59581 4.65738 4.86335 4.88240 4.97931 5.02876 5.14377 5.24850 5.31679 5.32996 5.37747 5.49313 5.50736 5.57584 5.74323 5.81112 5.90808 5.91642 6.03282 6.09357 6.10053 6.15431 6.33679 6.39887 6.44681 6.66691 6.69718 6.88061 7.35181 7.42223 7.69094 7.75365 7.79979 8.49433 8.65092 8.99356 9.59251 11.09071 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012022 B = 0.004667 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.456780 B = 5998.155169 C = 7599.936800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.525 4.525 8 H 0.072 0.928 9 C 0.004 3.996 10 C -0.123 4.123 11 C 0.512 3.488 12 O -0.539 6.539 13 N -0.733 5.733 14 C 0.152 3.848 15 H 0.090 0.910 16 C -0.128 4.128 17 C 0.078 3.922 18 O -0.585 6.585 19 C -0.087 4.087 20 C -0.079 4.079 21 C -0.111 4.111 22 C -0.116 4.116 23 C -0.124 4.124 24 C -0.119 4.119 25 C -0.117 4.117 26 H 0.263 0.737 27 H 0.022 0.978 28 H 0.018 0.982 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.397 0.603 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.379 0.621 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.606 -13.347 -3.536 23.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.034 4.034 10 C -0.163 4.163 11 C 0.301 3.699 12 O -0.416 6.416 13 N -0.387 5.387 14 C 0.047 3.953 15 H 0.108 0.892 16 C -0.166 4.166 17 C 0.000 4.000 18 O -0.391 6.391 19 C -0.124 4.124 20 C -0.079 4.079 21 C -0.129 4.129 22 C -0.134 4.134 23 C -0.143 4.143 24 C -0.137 4.137 25 C -0.135 4.135 26 H 0.073 0.927 27 H 0.040 0.960 28 H 0.037 0.963 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.231 0.769 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.226 0.774 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 19.114 -13.054 -3.670 23.436 hybrid contribution -0.193 1.060 -0.036 1.078 sum 18.922 -11.994 -3.706 22.707 Atomic orbital electron populations 1.69910 1.06292 1.26953 1.51104 1.24964 0.94687 0.99181 0.94348 0.86802 0.80571 0.83470 0.78720 1.20278 1.21449 1.18608 1.21116 0.89318 0.94536 1.51274 0.90974 1.19344 0.96375 0.90196 0.97523 1.21672 0.88179 1.03242 1.03237 1.21456 0.91506 0.82914 0.74025 1.90640 1.70674 1.31489 1.48788 1.46239 1.06039 1.09211 1.77201 1.20807 0.81299 0.98113 0.95086 0.89236 1.21956 1.01451 0.97600 0.95635 1.22337 0.98843 0.96805 0.81985 1.86346 1.81504 1.42540 1.28731 1.20888 1.02050 0.97572 0.91912 1.19762 0.94868 0.98367 0.94947 1.21020 0.95954 0.99682 0.96254 1.21170 0.99505 0.99615 0.93088 1.21154 0.94708 0.98905 0.99484 1.21123 0.96948 0.99483 0.96147 1.21028 0.99734 0.99930 0.92845 0.92722 0.95971 0.96330 0.89718 0.89729 0.76900 0.91112 0.90771 0.93167 0.92655 0.77410 0.90205 0.89454 0.86205 0.85989 0.86257 0.86254 0.86225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 22.54 27.47 -169.99 -4.67 17.88 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.26 -6.66 6.54 56.52 0.37 -6.29 16 7 C -0.52 -14.95 9.66 -34.44 -0.33 -15.28 16 8 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 9 C 0.00 0.09 3.33 -27.88 -0.09 -0.01 16 10 C -0.12 -2.35 5.64 -27.88 -0.16 -2.51 16 11 C 0.51 8.84 6.40 -10.99 -0.07 8.77 16 12 O -0.54 -11.07 13.12 5.56 0.07 -11.00 16 13 N -0.73 -9.21 4.49 -53.81 -0.24 -9.45 16 14 C 0.15 1.70 2.24 -67.93 -0.15 1.55 16 15 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 16 C -0.13 -1.47 5.26 -26.73 -0.14 -1.61 16 17 C 0.08 1.11 5.65 37.16 0.21 1.32 16 18 O -0.59 -8.06 13.66 -35.23 -0.48 -8.54 16 19 C -0.09 -0.72 4.89 -27.88 -0.14 -0.86 16 20 C -0.08 -0.79 4.95 -104.62 -0.52 -1.31 16 21 C -0.11 -1.11 9.11 -39.58 -0.36 -1.47 16 22 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 23 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 24 C -0.12 -1.18 10.05 -39.59 -0.40 -1.58 16 25 C -0.12 -1.18 9.70 -39.59 -0.38 -1.56 16 26 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 27 H 0.02 0.57 7.16 -51.93 -0.37 0.19 16 28 H 0.02 0.47 7.53 -51.93 -0.39 0.08 16 29 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 30 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 31 H 0.40 4.01 7.84 -40.82 -0.32 3.69 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 34 H 0.05 0.77 7.85 -51.93 -0.41 0.36 16 35 H 0.06 0.92 5.64 -51.93 -0.29 0.63 16 36 H 0.38 3.88 9.12 45.56 0.42 4.29 16 37 H 0.08 0.56 8.08 -51.93 -0.42 0.14 16 38 H 0.09 0.61 8.09 -51.93 -0.42 0.19 16 39 H 0.12 0.98 7.58 -52.49 -0.40 0.59 16 40 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 353.45 15.07 5.33 5.33 Total: -1.00 -34.82 353.45 -8.61 -43.44 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.97 Total: 5.36 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -3.43 Total: -15.78 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.53 Total: -36.67 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.41 Total: -19.54 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.67 Total: 17.88 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.82 -8.61 -43.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812564534.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.824 kcal (2) G-P(sol) polarization free energy of solvation -34.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds