Wall clock time and date at job start Tue Mar 31 2020 07:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99814 * 2 1 4 4 H 1.48500 * 109.46884 * 269.99903 * 3 2 1 5 5 H 1.48507 * 109.46815 * 29.99575 * 3 2 1 6 6 H 1.48495 * 109.47286 * 149.99586 * 3 2 1 7 7 C 1.37869 * 120.00472 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99837 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00320 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47201 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47201 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99875 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00007 * 180.02562 * 11 10 9 14 14 C 1.46507 * 119.99827 * 179.97438 * 13 11 10 15 15 H 1.08992 * 109.47126 * 324.99882 * 14 13 11 16 16 C 1.53001 * 109.46797 * 84.99889 * 14 13 11 17 17 C 1.53000 * 109.47266 * 294.99617 * 16 14 13 18 18 O 1.42901 * 109.47208 * 180.02562 * 17 16 14 19 19 C 1.52996 * 109.47205 * 204.99635 * 14 13 11 20 20 C 1.50702 * 109.47203 * 65.00245 * 19 14 13 21 21 C 1.38234 * 119.99895 * 269.72772 * 20 19 14 22 22 C 1.38240 * 120.00062 * 180.32314 * 21 20 19 23 23 C 1.38235 * 119.99708 * 359.94741 * 22 21 20 24 24 C 1.38234 * 120.00204 * 0.02562 * 23 22 21 25 25 C 1.38230 * 119.99885 * 0.02562 * 24 23 22 26 26 H 0.96998 * 120.00221 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46946 * 60.00005 * 9 7 2 28 28 H 1.08995 * 109.47274 * 299.99819 * 9 7 2 29 29 H 1.09005 * 109.46950 * 60.00272 * 10 9 7 30 30 H 1.08997 * 109.47589 * 300.00170 * 10 9 7 31 31 H 0.96998 * 120.00304 * 359.97438 * 13 11 10 32 32 H 1.09003 * 109.47262 * 54.99847 * 16 14 13 33 33 H 1.09008 * 109.46910 * 174.99935 * 16 14 13 34 34 H 1.08994 * 109.47383 * 300.00342 * 17 16 14 35 35 H 1.09003 * 109.46466 * 60.00450 * 17 16 14 36 36 H 0.96692 * 114.00056 * 180.02562 * 18 17 16 37 37 H 1.09003 * 109.47252 * 305.00423 * 19 14 13 38 38 H 1.09001 * 109.47630 * 185.00477 * 19 14 13 39 39 H 1.08001 * 120.00279 * 0.27436 * 21 20 19 40 40 H 1.07997 * 119.99852 * 179.97438 * 22 21 20 41 41 H 1.08000 * 119.99766 * 180.02562 * 23 22 21 42 42 H 1.07992 * 119.99701 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.00356 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6363 0.0023 11 6 5.5287 -2.6363 0.0022 12 8 6.1350 -1.5859 0.0018 13 7 6.2026 -3.8034 0.0026 14 6 7.6676 -3.8033 0.0020 15 1 8.0306 -2.9619 -0.5880 16 6 8.1782 -3.6767 1.4388 17 6 7.7736 -2.3144 2.0056 18 8 8.2510 -2.1959 3.3473 19 6 8.1775 -5.1110 -0.6069 20 6 7.7782 -5.1784 -2.0586 21 6 6.5749 -5.7559 -2.4183 22 6 6.2117 -5.8237 -3.7504 23 6 7.0514 -5.3131 -4.7226 24 6 8.2545 -4.7352 -4.3628 25 6 8.6181 -4.6683 -3.0308 26 1 -0.4850 0.8400 -0.0004 27 1 3.8746 -0.6798 0.8912 28 1 3.8753 -0.6803 -0.8888 29 1 3.6587 -3.1508 -0.8876 30 1 3.6580 -3.1497 0.8924 31 1 5.7176 -4.6435 0.0033 32 1 7.7438 -4.4680 2.0498 33 1 9.2646 -3.7658 1.4475 34 1 8.2079 -1.5231 1.3946 35 1 6.6873 -2.2254 1.9968 36 1 8.0299 -1.3551 3.7705 37 1 7.7431 -5.9550 -0.0711 38 1 9.2638 -5.1500 -0.5267 39 1 5.9188 -6.1547 -1.6588 40 1 5.2718 -6.2752 -4.0315 41 1 6.7675 -5.3658 -5.7633 42 1 8.9106 -4.3367 -5.1223 43 1 9.5582 -4.2172 -2.7496 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812564534.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:32 Heat of formation + Delta-G solvation = -109.520539 kcal Electronic energy + Delta-G solvation = -23237.485585 eV Core-core repulsion = 19859.580458 eV Total energy + Delta-G solvation = -3377.905128 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.20634 -39.97016 -38.06875 -36.83024 -35.51724 -33.66168 -33.07458 -32.13575 -31.69226 -28.84847 -27.86283 -24.75251 -23.56670 -23.33256 -22.09061 -21.61693 -21.14811 -19.20498 -18.41561 -17.74708 -17.61066 -17.30967 -16.45915 -16.25764 -16.01295 -15.86337 -15.68154 -15.06700 -14.86103 -14.69678 -14.53672 -14.23086 -14.08050 -13.84798 -13.39407 -13.28348 -13.04307 -12.91150 -12.79549 -12.36887 -12.13633 -11.97217 -11.91597 -11.79659 -11.77244 -11.68375 -11.39757 -10.90983 -10.78804 -10.65544 -10.05521 -9.75166 -9.54616 -8.32076 -6.34799 0.48924 0.55790 1.31879 1.33747 1.48219 1.75015 2.29882 2.33851 2.87948 3.03853 3.25128 3.84492 3.91626 3.98493 4.08454 4.16706 4.20513 4.31117 4.37012 4.39452 4.41433 4.49424 4.52091 4.65433 4.67940 4.79089 4.87046 4.93760 4.99924 5.05619 5.18844 5.22304 5.24319 5.33920 5.45189 5.57180 5.61549 5.62163 5.68555 5.76635 6.18249 6.23345 6.64090 6.71811 6.75484 7.30624 7.37388 8.83778 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012022 B = 0.004667 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.456780 B = 5998.155169 C = 7599.936800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.015 3.985 3 Si 0.937 3.063 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.260 1.260 7 C -0.529 4.529 8 H 0.049 0.951 9 C 0.009 3.991 10 C -0.119 4.119 11 C 0.517 3.483 12 O -0.576 6.576 13 N -0.712 5.712 14 C 0.157 3.843 15 H 0.068 0.932 16 C -0.121 4.121 17 C 0.080 3.920 18 O -0.592 6.592 19 C -0.076 4.076 20 C -0.090 4.090 21 C -0.123 4.123 22 C -0.132 4.132 23 C -0.139 4.139 24 C -0.133 4.133 25 C -0.131 4.131 26 H 0.267 0.733 27 H 0.010 0.990 28 H 0.006 0.994 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.412 0.588 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.035 0.965 35 H 0.030 0.970 36 H 0.392 0.608 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.136 0.864 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.446 -14.427 -3.331 25.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.183 4.183 3 Si 0.762 3.238 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.184 1.184 7 C -0.567 4.567 8 H 0.067 0.933 9 C -0.029 4.029 10 C -0.159 4.159 11 C 0.305 3.695 12 O -0.456 6.456 13 N -0.365 5.365 14 C 0.052 3.948 15 H 0.086 0.914 16 C -0.160 4.160 17 C 0.002 3.998 18 O -0.400 6.400 19 C -0.113 4.113 20 C -0.090 4.090 21 C -0.140 4.140 22 C -0.150 4.150 23 C -0.156 4.156 24 C -0.151 4.151 25 C -0.149 4.149 26 H 0.076 0.924 27 H 0.028 0.972 28 H 0.025 0.975 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.249 0.751 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.241 0.759 37 H 0.119 0.881 38 H 0.126 0.874 39 H 0.154 0.846 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 20.966 -14.182 -3.461 25.547 hybrid contribution -0.783 1.334 -0.105 1.550 sum 20.183 -12.848 -3.566 24.189 Atomic orbital electron populations 1.70023 1.07799 1.28067 1.52592 1.25786 0.95452 1.02780 0.94284 0.85844 0.79303 0.79588 0.79056 1.19563 1.20365 1.18438 1.21445 0.91367 0.93634 1.50213 0.93302 1.19178 0.93790 0.93761 0.96197 1.21491 0.89998 0.99781 1.04606 1.20989 0.90664 0.83677 0.74174 1.90635 1.71005 1.33060 1.50879 1.46001 1.06987 1.08392 1.75128 1.20872 0.79754 0.99131 0.95033 0.91395 1.21936 1.02710 0.96009 0.95336 1.22267 0.97165 0.98183 0.82176 1.86320 1.81437 1.43754 1.28494 1.20869 1.03378 0.96299 0.90802 1.19977 0.94900 0.98345 0.95747 1.21309 0.96355 0.99727 0.96656 1.21448 1.00135 0.99942 0.93515 1.21433 0.94925 0.98958 1.00332 1.21409 0.97298 0.99573 0.96776 1.21329 1.00494 0.99981 0.93077 0.92401 0.97174 0.97530 0.88504 0.88321 0.75096 0.90106 0.88876 0.94705 0.95190 0.75928 0.88093 0.87377 0.84594 0.84984 0.85050 0.84873 0.84940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.21 13.96 21.44 0.30 -58.91 16 2 C 0.01 0.87 5.47 84.65 0.46 1.33 16 3 Si 0.94 46.76 27.47 68.60 1.88 48.64 16 4 H -0.27 -13.11 7.11 99.48 0.71 -12.41 16 5 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 6 H -0.26 -12.81 6.54 99.48 0.65 -12.16 16 7 C -0.53 -30.48 9.66 25.60 0.25 -30.24 16 8 H 0.05 2.97 7.99 -2.91 -0.02 2.95 16 9 C 0.01 0.43 3.33 29.85 0.10 0.53 16 10 C -0.12 -4.43 5.64 29.85 0.17 -4.26 16 11 C 0.52 17.32 6.40 87.66 0.56 17.88 16 12 O -0.58 -23.55 13.12 -3.03 -0.04 -23.59 16 13 N -0.71 -16.38 4.49 -442.54 -1.99 -18.37 16 14 C 0.16 3.13 2.24 44.99 0.10 3.23 16 15 H 0.07 1.72 7.58 -2.39 -0.02 1.70 16 16 C -0.12 -2.47 5.26 30.59 0.16 -2.31 16 17 C 0.08 2.20 5.65 71.98 0.41 2.61 16 18 O -0.59 -15.46 13.66 -148.98 -2.04 -17.49 16 19 C -0.08 -1.01 4.89 29.85 0.15 -0.87 16 20 C -0.09 -1.57 4.95 -19.87 -0.10 -1.66 16 21 C -0.12 -2.18 9.11 22.27 0.20 -1.98 16 22 C -0.13 -2.50 10.05 22.27 0.22 -2.28 16 23 C -0.14 -2.62 10.05 22.27 0.22 -2.39 16 24 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 25 C -0.13 -2.39 9.70 22.27 0.22 -2.18 16 26 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 27 H 0.01 0.51 7.16 -2.38 -0.02 0.49 16 28 H 0.01 0.33 7.53 -2.39 -0.02 0.31 16 29 H 0.10 3.35 8.14 -2.38 -0.02 3.33 16 30 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 31 H 0.41 7.09 7.84 -92.71 -0.73 6.36 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.03 1.05 7.85 -2.39 -0.02 1.04 16 35 H 0.03 0.98 5.64 -2.39 -0.01 0.97 16 36 H 0.39 7.63 9.12 -74.06 -0.68 6.95 16 37 H 0.10 0.97 8.08 -2.39 -0.02 0.95 16 38 H 0.11 1.07 8.09 -2.39 -0.02 1.05 16 39 H 0.14 1.85 7.58 -2.91 -0.02 1.83 16 40 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 41 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 42 H 0.13 1.96 8.06 -2.91 -0.02 1.93 16 43 H 0.13 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -75.58 353.45 1.02 -74.56 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: -0.45 Total: 19.98 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: 3.35 Total: -24.82 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -1.69 Total: -77.28 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -2.07 Total: -41.09 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.88 Total: 48.64 kcal Total: -75.58 1.02 -74.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812564534.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.956 kcal (2) G-P(sol) polarization free energy of solvation -75.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds