Wall clock time and date at job start Tue Mar 31 2020 07:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00053 * 2 1 4 4 H 1.48500 * 109.47484 * 270.00100 * 3 2 1 5 5 H 1.48502 * 109.47063 * 30.00388 * 3 2 1 6 6 H 1.48505 * 109.47230 * 149.99977 * 3 2 1 7 7 C 1.37883 * 119.99701 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00274 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99319 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.46718 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.46893 * 179.97438 * 10 9 7 12 12 O 1.21275 * 120.00524 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99743 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00062 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.47415 * 34.99714 * 14 13 11 16 16 C 1.53004 * 109.46961 * 274.99597 * 14 13 11 17 17 C 1.52998 * 109.46994 * 65.00110 * 16 14 13 18 18 O 1.42898 * 109.47084 * 179.97438 * 17 16 14 19 19 C 1.53001 * 109.47525 * 154.99937 * 14 13 11 20 20 C 1.50706 * 109.46607 * 294.99683 * 19 14 13 21 21 C 1.38238 * 119.99744 * 90.00198 * 20 19 14 22 22 C 1.38234 * 119.99693 * 179.97438 * 21 20 19 23 23 C 1.38234 * 120.00240 * 359.97438 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.26327 * 23 22 21 25 25 C 1.38234 * 120.00173 * 269.97579 * 20 19 14 26 26 H 0.96998 * 120.00161 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47204 * 60.00217 * 9 7 2 28 28 H 1.08998 * 109.47263 * 299.99831 * 9 7 2 29 29 H 1.09005 * 109.47015 * 59.99789 * 10 9 7 30 30 H 1.09001 * 109.47188 * 300.00479 * 10 9 7 31 31 H 0.97000 * 119.99811 * 359.97438 * 13 11 10 32 32 H 1.09004 * 109.47240 * 184.99614 * 16 14 13 33 33 H 1.08997 * 109.47353 * 305.00278 * 16 14 13 34 34 H 1.09001 * 109.47352 * 300.00209 * 17 16 14 35 35 H 1.09001 * 109.47379 * 59.99730 * 17 16 14 36 36 H 0.96705 * 113.99743 * 179.97438 * 18 17 16 37 37 H 1.08997 * 109.47212 * 175.00386 * 19 14 13 38 38 H 1.08995 * 109.47163 * 54.99797 * 19 14 13 39 39 H 1.07997 * 119.99846 * 359.97438 * 21 20 19 40 40 H 1.07999 * 119.99751 * 179.97438 * 22 21 20 41 41 H 1.08002 * 119.99744 * 179.97438 * 23 22 21 42 42 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 43 43 H 1.07999 * 120.00025 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5285 -2.6365 -0.0001 12 8 6.1349 -1.5863 -0.0005 13 7 6.2024 -3.8038 -0.0008 14 6 7.6673 -3.8038 -0.0002 15 1 8.0305 -2.9624 0.5899 16 6 8.1778 -3.6771 -1.4370 17 6 7.7733 -2.3147 -2.0037 18 8 8.2505 -2.1962 -3.3454 19 6 8.1772 -5.1116 0.6086 20 6 7.7780 -5.1789 2.0603 21 6 6.5721 -5.7513 2.4196 22 6 6.2062 -5.8136 3.7512 23 6 7.0465 -5.3040 4.7235 24 6 8.2501 -4.7272 4.3637 25 6 8.6180 -4.6689 3.0325 26 1 -0.4850 0.8400 0.0004 27 1 3.8745 -0.6808 0.8905 28 1 3.8752 -0.6796 -0.8894 29 1 3.6585 -3.1502 -0.8903 30 1 3.6578 -3.1507 0.8896 31 1 5.7174 -4.6438 -0.0008 32 1 9.2642 -3.7662 -1.4459 33 1 7.7434 -4.4683 -2.0481 34 1 6.6869 -2.2255 -1.9949 35 1 8.2077 -1.5235 -1.3927 36 1 8.0295 -1.3552 -3.7686 37 1 9.2635 -5.1505 0.5284 38 1 7.7428 -5.9555 0.0727 39 1 5.9159 -6.1498 1.6601 40 1 5.2639 -6.2603 4.0320 41 1 6.7603 -5.3523 5.7638 42 1 8.9046 -4.3251 5.1229 43 1 9.5601 -4.2218 2.7517 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812564535.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:36 Heat of formation + Delta-G solvation = -85.237071 kcal Electronic energy + Delta-G solvation = -23239.092544 eV Core-core repulsion = 19862.240427 eV Total energy + Delta-G solvation = -3376.852117 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.10789 -39.07090 -36.95975 -35.78604 -33.48704 -32.47935 -31.61140 -31.03260 -30.76374 -27.90841 -26.09528 -23.75746 -22.75130 -21.79007 -21.21979 -20.57136 -19.69010 -17.37685 -17.19640 -16.90998 -16.50502 -15.91298 -15.38704 -15.21313 -14.82948 -14.55641 -14.12125 -13.97742 -13.76324 -13.54387 -13.28174 -13.05255 -12.71373 -12.57138 -12.34943 -12.16526 -12.01361 -11.44133 -11.42375 -11.15061 -11.09992 -10.98557 -10.80218 -10.17173 -10.04021 -9.81563 -9.76833 -9.23499 -9.16864 -9.05816 -8.91784 -8.77029 -8.51624 -6.03903 -4.02497 1.22245 1.28786 3.10764 3.36104 3.42259 3.43996 3.53523 3.62996 4.15566 4.49661 4.59576 4.65827 4.86315 4.88353 4.98006 5.02914 5.14398 5.24813 5.31651 5.33038 5.37814 5.49290 5.50809 5.57546 5.74306 5.81080 5.90895 5.91727 6.03217 6.09265 6.10030 6.15406 6.33781 6.39993 6.44760 6.66722 6.69716 6.88169 7.34636 7.42799 7.68905 7.75372 7.79976 8.49454 8.65091 8.99432 9.59214 11.09050 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012024 B = 0.004671 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.053356 B = 5993.304291 C = 7594.577582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.072 0.928 9 C 0.004 3.996 10 C -0.123 4.123 11 C 0.512 3.488 12 O -0.539 6.539 13 N -0.733 5.733 14 C 0.152 3.848 15 H 0.090 0.910 16 C -0.128 4.128 17 C 0.078 3.922 18 O -0.585 6.585 19 C -0.087 4.087 20 C -0.080 4.080 21 C -0.111 4.111 22 C -0.116 4.116 23 C -0.124 4.124 24 C -0.119 4.119 25 C -0.117 4.117 26 H 0.263 0.737 27 H 0.023 0.977 28 H 0.017 0.983 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.397 0.603 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.379 0.621 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.598 -13.332 3.613 23.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.563 4.563 8 H 0.090 0.910 9 C -0.034 4.034 10 C -0.163 4.163 11 C 0.301 3.699 12 O -0.416 6.416 13 N -0.387 5.387 14 C 0.047 3.953 15 H 0.108 0.892 16 C -0.166 4.166 17 C 0.000 4.000 18 O -0.391 6.391 19 C -0.124 4.124 20 C -0.080 4.080 21 C -0.129 4.129 22 C -0.134 4.134 23 C -0.143 4.143 24 C -0.137 4.137 25 C -0.135 4.135 26 H 0.073 0.927 27 H 0.041 0.959 28 H 0.036 0.964 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.231 0.769 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.226 0.774 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 19.106 -13.038 3.754 23.434 hybrid contribution -0.194 1.060 -0.022 1.078 sum 18.912 -11.978 3.732 22.695 Atomic orbital electron populations 1.69909 1.06297 1.26956 1.51089 1.24967 0.94687 0.99186 0.94347 0.86806 0.80637 0.83464 0.78695 1.20273 1.21447 1.18564 1.21117 0.89317 0.94533 1.51288 0.90973 1.19345 0.96376 0.90191 0.97520 1.21673 0.88179 1.03244 1.03238 1.21456 0.91505 0.82912 0.74025 1.90639 1.70665 1.31498 1.48780 1.46240 1.06037 1.09213 1.77207 1.20807 0.81304 0.98109 0.95085 0.89240 1.21954 1.01451 0.97599 0.95634 1.22338 0.98842 0.96810 0.81984 1.86350 1.81506 1.42532 1.28731 1.20886 1.02052 0.97569 0.91913 1.19764 0.94855 0.98391 0.94943 1.21018 0.95918 0.99713 0.96259 1.21169 0.99490 0.99622 0.93088 1.21154 0.94711 0.98905 0.99482 1.21126 0.96951 0.99463 0.96155 1.21030 0.99728 0.99929 0.92856 0.92723 0.95888 0.96418 0.89762 0.89683 0.76901 0.90771 0.91112 0.92654 0.93165 0.77411 0.89458 0.90207 0.86208 0.85988 0.86255 0.86253 0.86226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.99 13.96 55.43 0.77 -27.21 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 22.53 27.47 -169.99 -4.67 17.86 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 6 H -0.26 -6.69 6.54 56.52 0.37 -6.32 16 7 C -0.52 -14.95 9.66 -34.44 -0.33 -15.28 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C 0.00 0.09 3.33 -27.88 -0.09 0.00 16 10 C -0.12 -2.35 5.64 -27.88 -0.16 -2.51 16 11 C 0.51 8.84 6.40 -10.99 -0.07 8.77 16 12 O -0.54 -11.07 13.11 5.56 0.07 -11.00 16 13 N -0.73 -9.21 4.48 -53.81 -0.24 -9.45 16 14 C 0.15 1.70 2.24 -67.93 -0.15 1.55 16 15 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 16 C -0.13 -1.47 5.26 -26.73 -0.14 -1.61 16 17 C 0.08 1.11 5.65 37.16 0.21 1.32 16 18 O -0.59 -8.04 13.66 -35.23 -0.48 -8.52 16 19 C -0.09 -0.72 4.89 -27.88 -0.14 -0.86 16 20 C -0.08 -0.79 4.95 -104.62 -0.52 -1.31 16 21 C -0.11 -1.11 9.10 -39.58 -0.36 -1.47 16 22 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 23 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 24 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 25 C -0.12 -1.18 9.70 -39.58 -0.38 -1.56 16 26 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 27 H 0.02 0.60 7.16 -51.93 -0.37 0.22 16 28 H 0.02 0.45 7.52 -51.93 -0.39 0.06 16 29 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.40 4.01 7.82 -40.82 -0.32 3.69 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.92 5.64 -51.93 -0.29 0.62 16 35 H 0.05 0.76 7.85 -51.93 -0.41 0.36 16 36 H 0.38 3.86 9.12 45.56 0.42 4.27 16 37 H 0.09 0.61 8.08 -51.93 -0.42 0.19 16 38 H 0.08 0.56 8.09 -51.93 -0.42 0.14 16 39 H 0.12 0.99 7.57 -52.49 -0.40 0.59 16 40 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 353.40 15.07 5.33 5.33 Total: -1.00 -34.83 353.40 -8.61 -43.44 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -5.97 Total: 5.36 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -3.43 Total: -15.80 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.53 Total: -36.67 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.41 Total: -19.52 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.67 Total: 17.86 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.83 -8.61 -43.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812564535.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.797 kcal (2) G-P(sol) polarization free energy of solvation -34.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds