Wall clock time and date at job start Tue Mar 31 2020 07:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00053 * 2 1 4 4 H 1.48500 * 109.47484 * 270.00100 * 3 2 1 5 5 H 1.48502 * 109.47063 * 30.00388 * 3 2 1 6 6 H 1.48505 * 109.47230 * 149.99977 * 3 2 1 7 7 C 1.37883 * 119.99701 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00274 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99319 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.46718 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.46893 * 179.97438 * 10 9 7 12 12 O 1.21275 * 120.00524 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99743 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00062 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.47415 * 34.99714 * 14 13 11 16 16 C 1.53004 * 109.46961 * 274.99597 * 14 13 11 17 17 C 1.52998 * 109.46994 * 65.00110 * 16 14 13 18 18 O 1.42898 * 109.47084 * 179.97438 * 17 16 14 19 19 C 1.53001 * 109.47525 * 154.99937 * 14 13 11 20 20 C 1.50706 * 109.46607 * 294.99683 * 19 14 13 21 21 C 1.38238 * 119.99744 * 90.00198 * 20 19 14 22 22 C 1.38234 * 119.99693 * 179.97438 * 21 20 19 23 23 C 1.38234 * 120.00240 * 359.97438 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.26327 * 23 22 21 25 25 C 1.38234 * 120.00173 * 269.97579 * 20 19 14 26 26 H 0.96998 * 120.00161 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47204 * 60.00217 * 9 7 2 28 28 H 1.08998 * 109.47263 * 299.99831 * 9 7 2 29 29 H 1.09005 * 109.47015 * 59.99789 * 10 9 7 30 30 H 1.09001 * 109.47188 * 300.00479 * 10 9 7 31 31 H 0.97000 * 119.99811 * 359.97438 * 13 11 10 32 32 H 1.09004 * 109.47240 * 184.99614 * 16 14 13 33 33 H 1.08997 * 109.47353 * 305.00278 * 16 14 13 34 34 H 1.09001 * 109.47352 * 300.00209 * 17 16 14 35 35 H 1.09001 * 109.47379 * 59.99730 * 17 16 14 36 36 H 0.96705 * 113.99743 * 179.97438 * 18 17 16 37 37 H 1.08997 * 109.47212 * 175.00386 * 19 14 13 38 38 H 1.08995 * 109.47163 * 54.99797 * 19 14 13 39 39 H 1.07997 * 119.99846 * 359.97438 * 21 20 19 40 40 H 1.07999 * 119.99751 * 179.97438 * 22 21 20 41 41 H 1.08002 * 119.99744 * 179.97438 * 23 22 21 42 42 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 43 43 H 1.07999 * 120.00025 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5285 -2.6365 -0.0001 12 8 6.1349 -1.5863 -0.0005 13 7 6.2024 -3.8038 -0.0008 14 6 7.6673 -3.8038 -0.0002 15 1 8.0305 -2.9624 0.5899 16 6 8.1778 -3.6771 -1.4370 17 6 7.7733 -2.3147 -2.0037 18 8 8.2505 -2.1962 -3.3454 19 6 8.1772 -5.1116 0.6086 20 6 7.7780 -5.1789 2.0603 21 6 6.5721 -5.7513 2.4196 22 6 6.2062 -5.8136 3.7512 23 6 7.0465 -5.3040 4.7235 24 6 8.2501 -4.7272 4.3637 25 6 8.6180 -4.6689 3.0325 26 1 -0.4850 0.8400 0.0004 27 1 3.8745 -0.6808 0.8905 28 1 3.8752 -0.6796 -0.8894 29 1 3.6585 -3.1502 -0.8903 30 1 3.6578 -3.1507 0.8896 31 1 5.7174 -4.6438 -0.0008 32 1 9.2642 -3.7662 -1.4459 33 1 7.7434 -4.4683 -2.0481 34 1 6.6869 -2.2255 -1.9949 35 1 8.2077 -1.5235 -1.3927 36 1 8.0295 -1.3552 -3.7686 37 1 9.2635 -5.1505 0.5284 38 1 7.7428 -5.9555 0.0727 39 1 5.9159 -6.1498 1.6601 40 1 5.2639 -6.2603 4.0320 41 1 6.7603 -5.3523 5.7638 42 1 8.9046 -4.3251 5.1229 43 1 9.5601 -4.2218 2.7517 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812564535.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:35 Heat of formation + Delta-G solvation = -109.502379 kcal Electronic energy + Delta-G solvation = -23240.144767 eV Core-core repulsion = 19862.240427 eV Total energy + Delta-G solvation = -3377.904340 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.20748 -39.97020 -38.06725 -36.82955 -35.51677 -33.66154 -33.07428 -32.13519 -31.69219 -28.84748 -27.86260 -24.75188 -23.56731 -23.33183 -22.09043 -21.61728 -21.14770 -19.20550 -18.41301 -17.74938 -17.61152 -17.30810 -16.44391 -16.27689 -16.00850 -15.86417 -15.67938 -15.06681 -14.85735 -14.72792 -14.49807 -14.22995 -14.09454 -13.84080 -13.39455 -13.28834 -13.04343 -12.90965 -12.79505 -12.36273 -12.13486 -11.97877 -11.91434 -11.80199 -11.77216 -11.67813 -11.39954 -10.90705 -10.78639 -10.65555 -10.05492 -9.75159 -9.54685 -8.32088 -6.34752 0.48861 0.55746 1.31613 1.33949 1.48567 1.74987 2.29904 2.33968 2.87837 3.03840 3.25360 3.84453 3.91648 3.98506 4.08527 4.16801 4.20468 4.31090 4.37014 4.39425 4.41467 4.49452 4.52153 4.65454 4.67913 4.79187 4.87006 4.93820 4.99937 5.05702 5.18848 5.22262 5.24319 5.33940 5.45241 5.57208 5.61572 5.62140 5.68516 5.76587 6.18212 6.23401 6.64049 6.71883 6.75741 7.30613 7.37372 8.83786 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012024 B = 0.004671 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.053356 B = 5993.304291 C = 7594.577582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.015 3.985 3 Si 0.937 3.063 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.529 4.529 8 H 0.049 0.951 9 C 0.009 3.991 10 C -0.119 4.119 11 C 0.517 3.483 12 O -0.576 6.576 13 N -0.712 5.712 14 C 0.157 3.843 15 H 0.068 0.932 16 C -0.121 4.121 17 C 0.080 3.920 18 O -0.592 6.592 19 C -0.076 4.076 20 C -0.090 4.090 21 C -0.123 4.123 22 C -0.132 4.132 23 C -0.139 4.139 24 C -0.133 4.133 25 C -0.131 4.131 26 H 0.267 0.733 27 H 0.007 0.993 28 H 0.009 0.991 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.412 0.588 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.030 0.970 35 H 0.035 0.965 36 H 0.392 0.608 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.136 0.864 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.428 -14.405 3.331 25.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.183 4.183 3 Si 0.762 3.238 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.567 4.567 8 H 0.067 0.933 9 C -0.029 4.029 10 C -0.159 4.159 11 C 0.305 3.695 12 O -0.456 6.456 13 N -0.365 5.365 14 C 0.052 3.948 15 H 0.086 0.914 16 C -0.160 4.160 17 C 0.002 3.998 18 O -0.400 6.400 19 C -0.113 4.113 20 C -0.090 4.090 21 C -0.140 4.140 22 C -0.150 4.150 23 C -0.156 4.156 24 C -0.151 4.151 25 C -0.149 4.149 26 H 0.076 0.924 27 H 0.026 0.974 28 H 0.027 0.973 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.249 0.751 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.241 0.759 37 H 0.126 0.874 38 H 0.119 0.881 39 H 0.154 0.846 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 20.947 -14.159 3.465 25.520 hybrid contribution -0.781 1.331 0.073 1.545 sum 20.166 -12.827 3.538 24.161 Atomic orbital electron populations 1.70023 1.07803 1.28069 1.52580 1.25791 0.95453 1.02787 0.94280 0.85842 0.79227 0.79562 0.79155 1.19265 1.20456 1.18626 1.21446 0.91363 0.93634 1.50229 0.93301 1.19179 0.93793 0.93756 0.96192 1.21492 0.89996 0.99782 1.04609 1.20989 0.90664 0.83675 0.74173 1.90633 1.70997 1.33070 1.50870 1.46002 1.06984 1.08393 1.75135 1.20872 0.79760 0.99117 0.95041 0.91417 1.21933 1.02703 0.96029 0.95324 1.22268 0.97187 0.98170 0.82174 1.86323 1.81443 1.43753 1.28494 1.20868 1.03381 0.96301 0.90799 1.19980 0.94886 0.98365 0.95748 1.21308 0.96322 0.99755 0.96659 1.21447 1.00122 0.99951 0.93518 1.21432 0.94928 0.98956 1.00330 1.21413 0.97302 0.99560 0.96787 1.21331 1.00493 0.99976 0.93086 0.92402 0.97414 0.97302 0.88306 0.88515 0.75096 0.88888 0.90104 0.95151 0.94703 0.75919 0.87381 0.88090 0.84594 0.84986 0.85049 0.84874 0.84937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.20 13.96 21.45 0.30 -58.90 16 2 C 0.01 0.86 5.47 84.66 0.46 1.33 16 3 Si 0.94 46.74 27.47 68.60 1.88 48.63 16 4 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 6 H -0.26 -12.99 6.54 99.48 0.65 -12.34 16 7 C -0.53 -30.49 9.66 25.60 0.25 -30.24 16 8 H 0.05 2.97 7.99 -2.92 -0.02 2.95 16 9 C 0.01 0.43 3.33 29.85 0.10 0.53 16 10 C -0.12 -4.43 5.64 29.85 0.17 -4.26 16 11 C 0.52 17.32 6.40 87.66 0.56 17.88 16 12 O -0.58 -23.55 13.11 -3.02 -0.04 -23.59 16 13 N -0.71 -16.38 4.48 -442.54 -1.98 -18.37 16 14 C 0.16 3.13 2.24 44.99 0.10 3.23 16 15 H 0.07 1.72 7.58 -2.39 -0.02 1.70 16 16 C -0.12 -2.47 5.26 30.60 0.16 -2.31 16 17 C 0.08 2.19 5.65 71.98 0.41 2.60 16 18 O -0.59 -15.40 13.66 -148.98 -2.03 -17.44 16 19 C -0.08 -1.01 4.89 29.85 0.15 -0.87 16 20 C -0.09 -1.57 4.95 -19.86 -0.10 -1.67 16 21 C -0.12 -2.19 9.10 22.27 0.20 -1.98 16 22 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 23 C -0.14 -2.62 10.05 22.27 0.22 -2.40 16 24 C -0.13 -2.47 10.05 22.27 0.22 -2.25 16 25 C -0.13 -2.40 9.70 22.27 0.22 -2.18 16 26 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 27 H 0.01 0.39 7.16 -2.39 -0.02 0.37 16 28 H 0.01 0.44 7.52 -2.39 -0.02 0.42 16 29 H 0.10 3.37 8.14 -2.38 -0.02 3.35 16 30 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 31 H 0.41 7.09 7.82 -92.71 -0.73 6.36 16 32 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.03 0.99 5.64 -2.39 -0.01 0.97 16 35 H 0.03 1.05 7.85 -2.39 -0.02 1.03 16 36 H 0.39 7.58 9.12 -74.05 -0.68 6.91 16 37 H 0.11 1.07 8.08 -2.39 -0.02 1.05 16 38 H 0.10 0.97 8.09 -2.39 -0.02 0.95 16 39 H 0.14 1.85 7.57 -2.91 -0.02 1.83 16 40 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 41 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 42 H 0.13 1.96 8.06 -2.91 -0.02 1.94 16 43 H 0.13 1.97 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -75.60 353.40 1.02 -74.58 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -0.45 Total: 19.97 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: 3.35 Total: -24.87 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -1.68 Total: -77.27 kcal Atomic # 8 Polarization: -38.96 SS G_CDS: -2.07 Total: -41.03 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.88 Total: 48.63 kcal Total: -75.60 1.02 -74.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812564535.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.924 kcal (2) G-P(sol) polarization free energy of solvation -75.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds