Wall clock time and date at job start Tue Mar 31 2020 08:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86794 * 120.00200 * 2 1 4 4 H 1.48507 * 109.47126 * 239.99755 * 3 2 1 5 5 H 1.48499 * 109.47260 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47113 * 119.99924 * 3 2 1 7 7 C 1.37882 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99913 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99702 * 0.02562 * 7 2 1 10 10 N 1.46908 * 109.46944 * 179.97438 * 9 7 2 11 11 C 1.46897 * 110.99825 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46659 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.46856 * 179.97438 * 12 11 10 14 14 C 1.52995 * 109.47208 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47278 * 179.97438 * 14 13 12 16 16 O 1.20824 * 120.00006 * 359.97438 * 15 14 13 17 17 O 1.34236 * 120.00349 * 180.02562 * 15 14 13 18 18 C 1.45190 * 117.00184 * 180.02562 * 17 15 14 19 19 C 1.50707 * 109.47131 * 179.97438 * 18 17 15 20 20 C 1.38238 * 119.99792 * 90.00017 * 19 18 17 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00179 * 269.97954 * 19 18 17 25 25 H 0.97006 * 120.00166 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47248 * 59.99874 * 9 7 2 27 27 H 1.08994 * 109.47051 * 299.99675 * 9 7 2 28 28 H 1.00906 * 110.99709 * 303.95526 * 10 9 7 29 29 H 1.08993 * 109.47436 * 60.00115 * 11 10 9 30 30 H 1.08999 * 109.46849 * 299.99689 * 11 10 9 31 31 H 1.09001 * 109.46847 * 60.00263 * 12 11 10 32 32 H 1.08999 * 109.47347 * 299.99520 * 12 11 10 33 33 H 1.09001 * 109.47197 * 59.99735 * 13 12 11 34 34 H 1.09004 * 109.47466 * 300.00253 * 13 12 11 35 35 H 1.09009 * 109.47115 * 60.00055 * 14 13 12 36 36 H 1.08999 * 109.47169 * 299.99983 * 14 13 12 37 37 H 1.09005 * 109.47695 * 60.00175 * 18 17 15 38 38 H 1.09000 * 109.47342 * 299.99412 * 18 17 15 39 39 H 1.08005 * 120.00068 * 359.97438 * 20 19 18 40 40 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 43 43 H 1.07999 * 119.99968 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2508 -2.4992 0.0005 10 7 2.2054 -3.6159 0.0005 11 6 1.5050 -4.9071 -0.0001 12 6 2.5300 -6.0431 -0.0007 13 6 1.8005 -7.3880 -0.0007 14 6 2.8253 -8.5240 -0.0007 15 6 2.1069 -9.8487 0.0000 16 8 0.8991 -9.8809 0.0008 17 8 2.8087 -10.9930 0.0006 18 6 2.0507 -12.2313 0.0006 19 6 3.0002 -13.4016 0.0007 20 6 3.4356 -13.9383 1.1980 21 6 4.3061 -15.0121 1.1981 22 6 4.7408 -15.5496 0.0010 23 6 4.3096 -15.0096 -1.1962 24 6 3.4354 -13.9387 -1.1963 25 1 -0.4851 0.8401 -0.0004 26 1 0.6245 -2.5571 -0.8897 27 1 0.6239 -2.5567 0.8903 28 1 2.8403 -3.5488 -0.7809 29 1 0.8805 -4.9813 -0.8902 30 1 0.8799 -4.9817 0.8897 31 1 3.1549 -5.9691 0.8893 32 1 3.1548 -5.9683 -0.8907 33 1 1.1753 -7.4623 -0.8904 34 1 1.1759 -7.4627 0.8895 35 1 3.4503 -8.4496 0.8894 36 1 3.4502 -8.4497 -0.8907 37 1 1.4231 -12.2732 -0.8897 38 1 1.4224 -12.2727 0.8904 39 1 3.0956 -13.5186 2.1333 40 1 4.6466 -15.4311 2.1335 41 1 5.4206 -16.3888 0.0012 42 1 4.6526 -15.4267 -2.1314 43 1 3.0947 -13.5199 -2.1317 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819219179.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:55 Heat of formation + Delta-G solvation = -83.448086 kcal Electronic energy + Delta-G solvation = -21023.328788 eV Core-core repulsion = 17646.554247 eV Total energy + Delta-G solvation = -3376.774541 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 2.89 seconds Orbital eigenvalues (eV) -40.78485 -39.54549 -36.99632 -36.13284 -34.05277 -32.65865 -32.24170 -31.38056 -29.48734 -27.14810 -26.06902 -23.57193 -23.06665 -21.83373 -21.39683 -21.00565 -20.53844 -17.80950 -17.50852 -16.99203 -16.50920 -16.25438 -15.75792 -15.38748 -15.20074 -14.62529 -14.29818 -13.89672 -13.83290 -13.64450 -13.39177 -13.21540 -12.92426 -12.65788 -12.29577 -12.16077 -11.61769 -11.57043 -11.53251 -11.35180 -11.19635 -10.95996 -10.87223 -10.72251 -10.67672 -10.50672 -10.33563 -9.83731 -9.39076 -9.33044 -9.15836 -8.45528 -7.26333 -6.00753 -4.02974 0.71053 0.93395 2.02908 2.48384 3.35204 3.38867 3.39543 3.42090 4.17179 4.32109 4.44531 4.50526 4.60894 4.65353 4.73897 4.74937 4.88635 4.96509 5.03905 5.16502 5.30787 5.34816 5.36243 5.43465 5.47070 5.55848 5.74836 5.85264 5.94838 5.98846 6.03450 6.07479 6.08177 6.19402 6.25956 6.49343 6.53695 6.59358 7.29113 7.45474 7.55656 7.80610 8.15706 8.42797 8.64807 9.06177 9.61774 11.10332 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.052939 B = 0.001662 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.784002 B =16843.936103 C =17039.708603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.516 4.516 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.692 5.692 11 C 0.058 3.942 12 C -0.115 4.115 13 C -0.108 4.108 14 C -0.111 4.111 15 C 0.460 3.540 16 O -0.506 6.506 17 O -0.355 6.355 18 C 0.107 3.893 19 C -0.097 4.097 20 C -0.095 4.095 21 C -0.123 4.123 22 C -0.111 4.111 23 C -0.123 4.123 24 C -0.095 4.095 25 H 0.262 0.738 26 H -0.014 1.014 27 H 0.028 0.972 28 H 0.327 0.673 29 H 0.018 0.982 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.631 -32.661 -0.792 33.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.554 4.554 8 H 0.080 0.920 9 C 0.066 3.934 10 N -0.322 5.322 11 C -0.072 4.072 12 C -0.153 4.153 13 C -0.146 4.146 14 C -0.149 4.149 15 C 0.303 3.697 16 O -0.393 6.393 17 O -0.272 6.272 18 C 0.034 3.966 19 C -0.097 4.097 20 C -0.113 4.113 21 C -0.141 4.141 22 C -0.129 4.129 23 C -0.141 4.141 24 C -0.113 4.113 25 H 0.071 0.929 26 H 0.004 0.996 27 H 0.046 0.954 28 H 0.143 0.857 29 H 0.036 0.964 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.160 -32.559 -0.098 33.566 hybrid contribution -0.113 0.759 -0.913 1.193 sum 8.047 -31.800 -1.010 32.818 Atomic orbital electron populations 1.69958 1.06097 1.26879 1.50815 1.25002 0.94888 0.99385 0.95348 0.86526 0.79398 0.82623 0.78629 1.20281 1.21344 1.20149 1.21172 0.93494 0.90309 1.50474 0.91992 1.19557 0.90646 0.87418 0.95785 1.60680 1.21294 1.01425 1.48796 1.21864 0.95302 0.90159 0.99849 1.21573 0.98553 0.92663 1.02493 1.21440 0.97038 0.92333 1.03804 1.21503 0.99868 0.87536 1.05983 1.24062 0.87149 0.86354 0.72094 1.90686 1.15653 1.87914 1.45095 1.86593 1.41829 1.14610 1.84190 1.21789 0.92007 0.79324 1.03514 1.19539 0.99845 0.96381 0.93918 1.21124 0.96664 0.96004 0.97541 1.21184 0.97892 0.96657 0.98397 1.21262 0.99350 0.99686 0.92594 1.21183 0.97879 0.96683 0.98393 1.21119 0.96654 0.96046 0.97531 0.92867 0.99627 0.95426 0.85670 0.96433 0.91800 0.91054 0.92173 0.91163 0.90925 0.87483 0.87613 0.90254 0.90226 0.85702 0.85659 0.85810 0.85668 0.85726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.92 9.32 -34.44 -0.32 -15.25 16 8 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 9 C 0.19 5.20 5.44 -4.97 -0.03 5.17 16 10 N -0.69 -15.13 6.49 -115.05 -0.75 -15.88 16 11 C 0.06 1.05 5.69 -3.82 -0.02 1.02 16 12 C -0.11 -1.53 5.47 -26.73 -0.15 -1.68 16 13 C -0.11 -1.27 4.50 -26.74 -0.12 -1.39 16 14 C -0.11 -1.04 5.81 -27.89 -0.16 -1.21 16 15 C 0.46 5.19 7.96 36.00 0.29 5.48 16 16 O -0.51 -7.18 15.73 -18.75 -0.29 -7.48 16 17 O -0.35 -3.69 10.20 -39.27 -0.40 -4.09 16 18 C 0.11 0.95 5.59 36.01 0.20 1.15 16 19 C -0.10 -0.78 5.52 -104.62 -0.58 -1.36 16 20 C -0.10 -0.70 9.70 -39.58 -0.38 -1.08 16 21 C -0.12 -0.78 10.05 -39.58 -0.40 -1.17 16 22 C -0.11 -0.66 10.05 -39.58 -0.40 -1.06 16 23 C -0.12 -0.78 10.05 -39.58 -0.40 -1.17 16 24 C -0.10 -0.70 9.70 -39.58 -0.38 -1.08 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H -0.01 -0.40 8.14 -51.93 -0.42 -0.82 16 27 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.33 6.75 8.72 -39.29 -0.34 6.41 16 29 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 34 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 35 H 0.11 0.84 8.14 -51.92 -0.42 0.42 16 36 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 38 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 39 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 40 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 41 H 0.12 0.47 8.06 -52.49 -0.42 0.05 16 42 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 43 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 369.50 15.07 5.57 5.57 Total: -1.00 -33.24 369.50 -10.17 -43.41 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -7.06 Total: 0.24 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -2.95 Total: -12.13 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: -0.01 Total: -42.43 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: -0.70 Total: -11.56 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.24 -10.17 -43.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819219179.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.040 kcal (2) G-P(sol) polarization free energy of solvation -33.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.90 seconds