Wall clock time and date at job start Tue Mar 31 2020 08:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86794 * 120.00200 * 2 1 4 4 H 1.48507 * 109.47126 * 239.99755 * 3 2 1 5 5 H 1.48499 * 109.47260 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47113 * 119.99924 * 3 2 1 7 7 C 1.37882 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99913 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99702 * 0.02562 * 7 2 1 10 10 N 1.46908 * 109.46944 * 179.97438 * 9 7 2 11 11 C 1.46897 * 110.99825 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46659 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.46856 * 179.97438 * 12 11 10 14 14 C 1.52995 * 109.47208 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47278 * 179.97438 * 14 13 12 16 16 O 1.20824 * 120.00006 * 359.97438 * 15 14 13 17 17 O 1.34236 * 120.00349 * 180.02562 * 15 14 13 18 18 C 1.45190 * 117.00184 * 180.02562 * 17 15 14 19 19 C 1.50707 * 109.47131 * 179.97438 * 18 17 15 20 20 C 1.38238 * 119.99792 * 90.00017 * 19 18 17 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00179 * 269.97954 * 19 18 17 25 25 H 0.97006 * 120.00166 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47248 * 59.99874 * 9 7 2 27 27 H 1.08994 * 109.47051 * 299.99675 * 9 7 2 28 28 H 1.00906 * 110.99709 * 303.95526 * 10 9 7 29 29 H 1.08993 * 109.47436 * 60.00115 * 11 10 9 30 30 H 1.08999 * 109.46849 * 299.99689 * 11 10 9 31 31 H 1.09001 * 109.46847 * 60.00263 * 12 11 10 32 32 H 1.08999 * 109.47347 * 299.99520 * 12 11 10 33 33 H 1.09001 * 109.47197 * 59.99735 * 13 12 11 34 34 H 1.09004 * 109.47466 * 300.00253 * 13 12 11 35 35 H 1.09009 * 109.47115 * 60.00055 * 14 13 12 36 36 H 1.08999 * 109.47169 * 299.99983 * 14 13 12 37 37 H 1.09005 * 109.47695 * 60.00175 * 18 17 15 38 38 H 1.09000 * 109.47342 * 299.99412 * 18 17 15 39 39 H 1.08005 * 120.00068 * 359.97438 * 20 19 18 40 40 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 43 43 H 1.07999 * 119.99968 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2508 -2.4992 0.0005 10 7 2.2054 -3.6159 0.0005 11 6 1.5050 -4.9071 -0.0001 12 6 2.5300 -6.0431 -0.0007 13 6 1.8005 -7.3880 -0.0007 14 6 2.8253 -8.5240 -0.0007 15 6 2.1069 -9.8487 0.0000 16 8 0.8991 -9.8809 0.0008 17 8 2.8087 -10.9930 0.0006 18 6 2.0507 -12.2313 0.0006 19 6 3.0002 -13.4016 0.0007 20 6 3.4356 -13.9383 1.1980 21 6 4.3061 -15.0121 1.1981 22 6 4.7408 -15.5496 0.0010 23 6 4.3096 -15.0096 -1.1962 24 6 3.4354 -13.9387 -1.1963 25 1 -0.4851 0.8401 -0.0004 26 1 0.6245 -2.5571 -0.8897 27 1 0.6239 -2.5567 0.8903 28 1 2.8403 -3.5488 -0.7809 29 1 0.8805 -4.9813 -0.8902 30 1 0.8799 -4.9817 0.8897 31 1 3.1549 -5.9691 0.8893 32 1 3.1548 -5.9683 -0.8907 33 1 1.1753 -7.4623 -0.8904 34 1 1.1759 -7.4627 0.8895 35 1 3.4503 -8.4496 0.8894 36 1 3.4502 -8.4497 -0.8907 37 1 1.4231 -12.2732 -0.8897 38 1 1.4224 -12.2727 0.8904 39 1 3.0956 -13.5186 2.1333 40 1 4.6466 -15.4311 2.1335 41 1 5.4206 -16.3888 0.0012 42 1 4.6526 -15.4267 -2.1314 43 1 3.0947 -13.5199 -2.1317 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819219179.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:49 Heat of formation + Delta-G solvation = -102.569732 kcal Electronic energy + Delta-G solvation = -21024.157965 eV Core-core repulsion = 17646.554247 eV Total energy + Delta-G solvation = -3377.603718 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.62885 -40.08121 -38.01783 -37.47750 -35.58259 -34.22105 -33.17401 -31.85203 -30.85000 -28.40642 -27.34510 -24.97666 -23.54427 -23.33302 -22.42995 -22.16368 -21.46416 -18.73418 -18.51560 -18.06160 -17.82115 -17.09996 -16.89423 -16.58418 -16.11474 -15.94334 -15.57250 -15.14644 -14.80967 -14.43618 -14.36259 -14.13774 -14.04844 -13.76110 -13.53008 -13.31547 -13.14458 -12.99012 -12.66891 -12.37282 -12.31439 -12.12441 -12.08685 -12.06326 -11.86765 -11.71193 -11.55767 -11.48007 -11.24327 -10.65577 -9.87705 -9.84603 -9.13176 -8.22401 -6.34603 0.18169 0.44863 1.15907 1.42155 1.46361 1.54426 1.75155 2.40877 2.87072 3.10667 3.49492 3.59597 3.77002 3.77669 3.96503 4.03716 4.11693 4.20093 4.24752 4.29994 4.38244 4.44514 4.57867 4.60603 4.68512 4.73838 4.78893 4.89709 4.98834 5.03265 5.09181 5.10238 5.25982 5.32878 5.36560 5.45250 5.51142 5.56329 5.57178 5.61948 6.01459 6.03262 6.44252 6.69911 6.73189 6.90123 7.36712 8.89168 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.052939 B = 0.001662 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.784002 B =16843.936103 C =17039.708603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.978 3.022 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.205 3.795 10 N -0.688 5.688 11 C 0.055 3.945 12 C -0.099 4.099 13 C -0.101 4.101 14 C -0.104 4.104 15 C 0.463 3.537 16 O -0.543 6.543 17 O -0.355 6.355 18 C 0.105 3.895 19 C -0.114 4.114 20 C -0.109 4.109 21 C -0.129 4.129 22 C -0.114 4.114 23 C -0.129 4.129 24 C -0.109 4.109 25 H 0.265 0.735 26 H -0.041 1.041 27 H -0.003 1.003 28 H 0.337 0.663 29 H 0.012 0.988 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.131 0.869 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.145 0.855 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.164 -33.403 -0.972 35.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.801 3.199 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.578 4.578 8 H 0.086 0.914 9 C 0.077 3.923 10 N -0.319 5.319 11 C -0.075 4.075 12 C -0.137 4.137 13 C -0.140 4.140 14 C -0.141 4.141 15 C 0.308 3.692 16 O -0.433 6.433 17 O -0.272 6.272 18 C 0.032 3.968 19 C -0.114 4.114 20 C -0.127 4.127 21 C -0.147 4.147 22 C -0.132 4.132 23 C -0.147 4.147 24 C -0.127 4.127 25 H 0.074 0.926 26 H -0.023 1.023 27 H 0.015 0.985 28 H 0.154 0.846 29 H 0.030 0.970 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.149 0.851 40 H 0.163 0.837 41 H 0.165 0.835 42 H 0.163 0.837 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 10.723 -33.337 -0.282 35.020 hybrid contribution -0.923 0.874 -0.854 1.531 sum 9.801 -32.463 -1.136 33.929 Atomic orbital electron populations 1.70100 1.07959 1.28122 1.51391 1.26026 0.95821 1.03631 0.94457 0.85315 0.78026 0.77255 0.79257 1.18911 1.20847 1.19196 1.21557 0.93970 0.91355 1.50869 0.91381 1.19231 0.90794 0.89267 0.93048 1.60556 1.20467 1.01585 1.49280 1.21989 0.96495 0.89952 0.99025 1.21423 0.97324 0.91232 1.03728 1.21293 0.97349 0.92512 1.02798 1.21489 0.99134 0.85306 1.08204 1.24407 0.86715 0.87119 0.70971 1.90677 1.17229 1.88398 1.46957 1.86588 1.41940 1.14905 1.83769 1.21886 0.92312 0.79110 1.03459 1.19578 1.00571 0.96494 0.94724 1.21318 0.97156 0.96631 0.97583 1.21483 0.97410 0.96246 0.99579 1.21618 0.99226 1.00049 0.92285 1.21484 0.97388 0.96267 0.99572 1.21315 0.97126 0.96656 0.97573 0.92609 1.02341 0.98477 0.84580 0.96968 0.93021 0.90277 0.90384 0.92167 0.92166 0.85278 0.85186 0.90315 0.90337 0.85133 0.83732 0.83500 0.83715 0.85110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.70 13.29 21.45 0.28 -57.42 16 2 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 3 Si 0.98 44.62 29.54 68.60 2.03 46.64 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.54 -31.41 9.32 25.60 0.24 -31.17 16 8 H 0.07 3.79 7.81 -2.91 -0.02 3.77 16 9 C 0.20 11.37 5.44 85.56 0.47 11.84 16 10 N -0.69 -30.18 6.49 -517.92 -3.36 -33.54 16 11 C 0.05 1.98 5.69 86.31 0.49 2.47 16 12 C -0.10 -2.48 5.47 30.60 0.17 -2.32 16 13 C -0.10 -2.27 4.50 30.59 0.14 -2.14 16 14 C -0.10 -1.73 5.81 29.85 0.17 -1.56 16 15 C 0.46 10.08 7.96 71.24 0.57 10.65 16 16 O -0.54 -15.53 15.73 21.97 0.35 -15.19 16 17 O -0.35 -7.12 10.20 -51.48 -0.53 -7.64 16 18 C 0.11 1.87 5.59 71.24 0.40 2.27 16 19 C -0.11 -1.80 5.52 -19.86 -0.11 -1.91 16 20 C -0.11 -1.52 9.70 22.27 0.22 -1.30 16 21 C -0.13 -1.43 10.05 22.27 0.22 -1.20 16 22 C -0.11 -1.13 10.05 22.27 0.22 -0.91 16 23 C -0.13 -1.42 10.05 22.27 0.22 -1.20 16 24 C -0.11 -1.51 9.70 22.27 0.22 -1.29 16 25 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 26 H -0.04 -2.45 8.14 -2.39 -0.02 -2.47 16 27 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 28 H 0.34 13.65 8.72 -89.69 -0.78 12.87 16 29 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.06 1.48 8.10 -2.39 -0.02 1.46 16 34 H 0.06 1.50 8.10 -2.38 -0.02 1.48 16 35 H 0.13 1.64 8.14 -2.38 -0.02 1.62 16 36 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.08 1.37 8.08 -2.38 -0.02 1.35 16 38 H 0.08 1.37 8.08 -2.39 -0.02 1.35 16 39 H 0.13 1.54 8.06 -2.91 -0.02 1.51 16 40 H 0.14 0.94 8.06 -2.91 -0.02 0.92 16 41 H 0.15 0.71 8.06 -2.91 -0.02 0.68 16 42 H 0.15 0.92 8.06 -2.91 -0.02 0.90 16 43 H 0.13 1.52 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -72.44 369.50 3.06 -69.38 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.20 Total: 15.14 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: 4.09 Total: -17.37 kcal Atomic # 7 Polarization: -87.88 SS G_CDS: -3.08 Total: -90.96 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.18 Total: -22.83 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -72.44 3.06 -69.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819219179.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.188 kcal (2) G-P(sol) polarization free energy of solvation -72.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds