Wall clock time and date at job start Tue Mar 31 2020 08:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48500 * 109.46922 * 269.99928 * 3 2 1 5 5 H 1.48500 * 109.47411 * 29.99750 * 3 2 1 6 6 H 1.48494 * 109.47378 * 149.99945 * 3 2 1 7 7 C 1.37873 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.39942 * 119.99708 * 179.97438 * 10 9 7 12 12 C 1.38861 * 120.02154 * 359.73393 * 11 10 9 13 13 C 1.38108 * 119.98073 * 179.74205 * 12 11 10 14 14 C 1.38696 * 120.01722 * 0.50378 * 13 12 11 15 15 O 1.36001 * 119.98124 * 179.75062 * 14 13 12 16 16 C 1.42905 * 116.99906 * 0.02562 * 15 14 13 17 17 C 1.52994 * 109.47160 * 180.02562 * 16 15 14 18 18 C 1.53174 * 109.54687 * 294.55524 * 17 16 15 19 19 C 1.53093 * 109.16736 * 183.15044 * 18 17 16 20 20 O 1.42904 * 109.41342 * 57.61123 * 19 18 17 21 21 C 1.42910 * 114.09377 * 298.84187 * 20 19 18 22 22 C 1.53086 * 109.41519 * 61.16073 * 21 20 19 23 23 C 1.38702 * 120.04020 * 359.76690 * 14 13 12 24 24 C 1.38111 * 120.01708 * 359.97438 * 23 14 13 25 25 H 0.96992 * 120.00316 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 27 27 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 28 28 H 0.96999 * 120.00080 * 0.02562 * 10 9 7 29 29 H 1.08006 * 120.00671 * 359.97438 * 12 11 10 30 30 H 1.07998 * 119.98584 * 180.22997 * 13 12 11 31 31 H 1.08996 * 109.46967 * 300.00382 * 16 15 14 32 32 H 1.08997 * 109.46869 * 60.00097 * 16 15 14 33 33 H 1.09001 * 109.54619 * 54.82604 * 17 16 15 34 34 H 1.09000 * 109.52233 * 303.06058 * 18 17 16 35 35 H 1.09011 * 109.52021 * 63.24922 * 18 17 16 36 36 H 1.09002 * 109.47938 * 297.62913 * 19 18 17 37 37 H 1.08997 * 109.48253 * 177.59404 * 19 18 17 38 38 H 1.08999 * 109.48141 * 301.17124 * 21 20 19 39 39 H 1.09007 * 109.48690 * 181.14296 * 21 20 19 40 40 H 1.08998 * 109.52468 * 182.48388 * 22 21 20 41 41 H 1.09001 * 109.52863 * 62.29415 * 22 21 20 42 42 H 1.08001 * 119.99057 * 179.97438 * 23 14 13 43 43 H 1.07997 * 120.00629 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5465 1.4405 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2034 -3.6126 0.0005 11 6 1.7370 -4.9320 0.0011 12 6 0.3718 -5.1863 0.0072 13 6 -0.0876 -6.4887 0.0023 14 6 0.8142 -7.5425 0.0019 15 8 0.3610 -8.8248 0.0023 16 6 -1.0557 -9.0122 0.0025 17 6 -1.3722 -10.5090 0.0035 18 6 -0.8914 -11.1354 -1.3090 19 6 -1.2822 -12.6154 -1.3325 20 8 -2.6980 -12.7353 -1.1800 21 6 -3.1989 -12.2092 0.0506 22 6 -2.8851 -10.7129 0.1296 23 6 2.1779 -7.2894 0.0015 24 6 2.6390 -5.9876 0.0009 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5570 -0.8897 27 1 0.6243 -2.5567 0.8903 28 1 3.1570 -3.4352 0.0009 29 1 -0.3304 -4.3657 0.0120 30 1 -1.1493 -6.6866 0.0033 31 1 -1.4831 -8.5502 0.8924 32 1 -1.4834 -8.5506 -0.8875 33 1 -0.8686 -10.9877 0.8434 34 1 -1.3578 -10.6221 -2.1499 35 1 0.1925 -11.0437 -1.3808 36 1 -0.7832 -13.1361 -0.5152 37 1 -0.9803 -13.0561 -2.2826 38 1 -2.7250 -12.7246 0.8860 39 1 -4.2779 -12.3572 0.0970 40 1 -3.2272 -10.3190 1.0866 41 1 -3.3918 -10.1910 -0.6822 42 1 2.8794 -8.1106 0.0016 43 1 3.7009 -5.7907 0.0010 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819445093.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:53 Heat of formation + Delta-G solvation = -76.370379 kcal Electronic energy + Delta-G solvation = -22212.658571 eV Core-core repulsion = 18836.190942 eV Total energy + Delta-G solvation = -3376.467629 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 3.12 seconds Orbital eigenvalues (eV) -40.05574 -39.29645 -37.56911 -34.91162 -34.06962 -32.43550 -31.40565 -30.56386 -28.87608 -27.61495 -25.87690 -23.86574 -23.67216 -22.98496 -21.43945 -20.65577 -20.27475 -17.84881 -17.19698 -16.51279 -16.31118 -15.93104 -15.67179 -15.37286 -15.01874 -14.74956 -14.31441 -14.14697 -13.85773 -13.53422 -13.18725 -13.03678 -12.67885 -12.61582 -12.34527 -12.02620 -12.00727 -11.81486 -11.64061 -11.29503 -11.06549 -10.95429 -10.87320 -10.65937 -10.52201 -10.38391 -10.10859 -9.82746 -9.40653 -9.02848 -8.57451 -8.43125 -6.34650 -6.22644 -4.27694 1.81887 2.19153 3.21450 3.27820 3.30600 3.37678 3.59225 4.24440 4.34734 4.39323 4.48790 4.55751 4.61777 4.69527 4.91068 5.04542 5.09771 5.14615 5.20618 5.26998 5.29744 5.36253 5.39427 5.48518 5.51706 5.59090 5.73979 5.82005 5.83600 5.90575 6.05271 6.12248 6.45399 6.56477 6.87841 6.88565 6.93409 7.04560 7.22686 7.41782 7.60408 7.82720 7.94390 8.30316 8.67500 8.90836 9.38852 10.88064 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.037805 B = 0.002339 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.460463 B =11967.953055 C =12506.883386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.538 4.538 8 H 0.062 0.938 9 C 0.252 3.748 10 N -0.733 5.733 11 C 0.205 3.795 12 C -0.166 4.166 13 C -0.151 4.151 14 C 0.041 3.959 15 O -0.322 6.322 16 C 0.069 3.931 17 C -0.087 4.087 18 C -0.149 4.149 19 C 0.060 3.940 20 O -0.385 6.385 21 C 0.063 3.937 22 C -0.151 4.151 23 C -0.099 4.099 24 C -0.181 4.181 25 H 0.266 0.734 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.391 0.609 29 H 0.127 0.873 30 H 0.117 0.883 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.051 0.949 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.120 0.880 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.576 -22.628 0.100 22.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.577 4.577 8 H 0.080 0.920 9 C 0.131 3.869 10 N -0.358 5.358 11 C 0.097 3.903 12 C -0.190 4.190 13 C -0.171 4.171 14 C -0.005 4.005 15 O -0.237 6.237 16 C -0.007 4.007 17 C -0.105 4.105 18 C -0.187 4.187 19 C -0.017 4.017 20 O -0.304 6.304 21 C -0.014 4.014 22 C -0.189 4.189 23 C -0.118 4.118 24 C -0.204 4.204 25 H 0.075 0.925 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.224 0.776 29 H 0.145 0.855 30 H 0.135 0.865 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.112 0.888 38 H 0.069 0.931 39 H 0.113 0.887 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.138 0.862 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.912 -22.556 -0.035 22.892 hybrid contribution 0.694 1.470 0.237 1.643 sum -3.218 -21.085 0.202 21.330 Atomic orbital electron populations 1.69940 1.06092 1.27344 1.49386 1.24937 0.94944 0.99477 0.94682 0.86407 0.79669 0.82564 0.78259 1.20438 1.20979 1.19752 1.21206 0.93376 0.90452 1.52626 0.91976 1.19071 0.88697 0.82743 0.96407 1.45468 1.09379 1.02190 1.78761 1.18015 0.92640 0.85854 0.93799 1.20565 0.94281 0.96360 1.07766 1.20913 0.98493 0.92507 1.05173 1.18533 0.93066 0.82428 1.06467 1.85942 1.22753 1.24504 1.90539 1.22640 0.80900 0.95932 1.01190 1.21172 0.95779 0.94493 0.99100 1.22218 1.02682 0.96190 0.97586 1.22619 0.81383 0.95713 1.01943 1.87933 1.22246 1.81387 1.38855 1.22545 0.99696 0.92424 0.86708 1.22192 0.95373 0.97929 1.03378 1.19969 0.92195 0.96235 1.03430 1.20348 0.98606 0.90995 1.10456 0.92466 0.96346 0.96336 0.77612 0.85519 0.86468 0.92418 0.92395 0.90082 0.90972 0.89876 0.93172 0.88817 0.93113 0.88716 0.90431 0.90575 0.86244 0.86175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.56 13.29 55.43 0.74 -24.82 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.54 -14.57 9.28 -34.44 -0.32 -14.89 16 8 H 0.06 1.61 7.60 -52.48 -0.40 1.22 16 9 C 0.25 6.40 4.67 -5.19 -0.02 6.38 16 10 N -0.73 -15.62 5.74 -59.76 -0.34 -15.96 16 11 C 0.20 3.98 6.66 -83.70 -0.56 3.42 16 12 C -0.17 -3.17 9.31 -39.40 -0.37 -3.54 16 13 C -0.15 -2.50 9.03 -39.46 -0.36 -2.85 16 14 C 0.04 0.65 6.69 -39.24 -0.26 0.39 16 15 O -0.32 -4.54 9.76 -19.74 -0.19 -4.74 16 16 C 0.07 0.77 4.13 37.15 0.15 0.92 16 17 C -0.09 -0.78 2.51 -90.44 -0.23 -1.01 16 18 C -0.15 -1.33 5.29 -26.59 -0.14 -1.47 16 19 C 0.06 0.49 6.84 37.21 0.25 0.74 16 20 O -0.39 -3.71 10.77 -35.23 -0.38 -4.09 16 21 C 0.06 0.46 6.84 37.20 0.25 0.72 16 22 C -0.15 -1.14 5.42 -26.59 -0.14 -1.28 16 23 C -0.10 -1.55 9.98 -39.46 -0.39 -1.95 16 24 C -0.18 -3.02 9.89 -39.40 -0.39 -3.41 16 25 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.02 0.51 7.96 -51.93 -0.41 0.09 16 27 H 0.02 0.51 7.94 -51.93 -0.41 0.10 16 28 H 0.39 7.71 8.34 -40.82 -0.34 7.37 16 29 H 0.13 2.56 6.73 -52.48 -0.35 2.20 16 30 H 0.12 1.67 6.29 -52.49 -0.33 1.34 16 31 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 32 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.78 7.93 -51.92 -0.41 0.37 16 36 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.09 0.57 8.14 -51.92 -0.42 0.14 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 350.06 15.07 5.28 5.28 Total: -1.00 -29.62 350.06 -9.36 -38.98 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -6.82 Total: 5.74 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -2.62 Total: -16.21 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.39 Total: -40.78 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.57 Total: -8.82 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.62 -9.36 -38.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819445093.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.390 kcal (2) G-P(sol) polarization free energy of solvation -29.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.12 seconds