Wall clock time and date at job start Tue Mar 31 2020 08:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48500 * 109.46922 * 269.99928 * 3 2 1 5 5 H 1.48500 * 109.47411 * 29.99750 * 3 2 1 6 6 H 1.48494 * 109.47378 * 149.99945 * 3 2 1 7 7 C 1.37873 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.39942 * 119.99708 * 179.97438 * 10 9 7 12 12 C 1.38861 * 120.02154 * 359.73393 * 11 10 9 13 13 C 1.38108 * 119.98073 * 179.74205 * 12 11 10 14 14 C 1.38696 * 120.01722 * 0.50378 * 13 12 11 15 15 O 1.36001 * 119.98124 * 179.75062 * 14 13 12 16 16 C 1.42905 * 116.99906 * 0.02562 * 15 14 13 17 17 C 1.52994 * 109.47160 * 180.02562 * 16 15 14 18 18 C 1.53174 * 109.54687 * 294.55524 * 17 16 15 19 19 C 1.53093 * 109.16736 * 183.15044 * 18 17 16 20 20 O 1.42904 * 109.41342 * 57.61123 * 19 18 17 21 21 C 1.42910 * 114.09377 * 298.84187 * 20 19 18 22 22 C 1.53086 * 109.41519 * 61.16073 * 21 20 19 23 23 C 1.38702 * 120.04020 * 359.76690 * 14 13 12 24 24 C 1.38111 * 120.01708 * 359.97438 * 23 14 13 25 25 H 0.96992 * 120.00316 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 27 27 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 28 28 H 0.96999 * 120.00080 * 0.02562 * 10 9 7 29 29 H 1.08006 * 120.00671 * 359.97438 * 12 11 10 30 30 H 1.07998 * 119.98584 * 180.22997 * 13 12 11 31 31 H 1.08996 * 109.46967 * 300.00382 * 16 15 14 32 32 H 1.08997 * 109.46869 * 60.00097 * 16 15 14 33 33 H 1.09001 * 109.54619 * 54.82604 * 17 16 15 34 34 H 1.09000 * 109.52233 * 303.06058 * 18 17 16 35 35 H 1.09011 * 109.52021 * 63.24922 * 18 17 16 36 36 H 1.09002 * 109.47938 * 297.62913 * 19 18 17 37 37 H 1.08997 * 109.48253 * 177.59404 * 19 18 17 38 38 H 1.08999 * 109.48141 * 301.17124 * 21 20 19 39 39 H 1.09007 * 109.48690 * 181.14296 * 21 20 19 40 40 H 1.08998 * 109.52468 * 182.48388 * 22 21 20 41 41 H 1.09001 * 109.52863 * 62.29415 * 22 21 20 42 42 H 1.08001 * 119.99057 * 179.97438 * 23 14 13 43 43 H 1.07997 * 120.00629 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5465 1.4405 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2034 -3.6126 0.0005 11 6 1.7370 -4.9320 0.0011 12 6 0.3718 -5.1863 0.0072 13 6 -0.0876 -6.4887 0.0023 14 6 0.8142 -7.5425 0.0019 15 8 0.3610 -8.8248 0.0023 16 6 -1.0557 -9.0122 0.0025 17 6 -1.3722 -10.5090 0.0035 18 6 -0.8914 -11.1354 -1.3090 19 6 -1.2822 -12.6154 -1.3325 20 8 -2.6980 -12.7353 -1.1800 21 6 -3.1989 -12.2092 0.0506 22 6 -2.8851 -10.7129 0.1296 23 6 2.1779 -7.2894 0.0015 24 6 2.6390 -5.9876 0.0009 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5570 -0.8897 27 1 0.6243 -2.5567 0.8903 28 1 3.1570 -3.4352 0.0009 29 1 -0.3304 -4.3657 0.0120 30 1 -1.1493 -6.6866 0.0033 31 1 -1.4831 -8.5502 0.8924 32 1 -1.4834 -8.5506 -0.8875 33 1 -0.8686 -10.9877 0.8434 34 1 -1.3578 -10.6221 -2.1499 35 1 0.1925 -11.0437 -1.3808 36 1 -0.7832 -13.1361 -0.5152 37 1 -0.9803 -13.0561 -2.2826 38 1 -2.7250 -12.7246 0.8860 39 1 -4.2779 -12.3572 0.0970 40 1 -3.2272 -10.3190 1.0866 41 1 -3.3918 -10.1910 -0.6822 42 1 2.8794 -8.1106 0.0016 43 1 3.7009 -5.7907 0.0010 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819445093.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:51 Heat of formation + Delta-G solvation = -93.825247 kcal Electronic energy + Delta-G solvation = -22213.415470 eV Core-core repulsion = 18836.190942 eV Total energy + Delta-G solvation = -3377.224529 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.11004 -40.21555 -38.84311 -36.33464 -35.19656 -34.29258 -32.02696 -31.91634 -30.41072 -28.73557 -27.50400 -25.05405 -24.50113 -24.34396 -22.68180 -22.12277 -21.01846 -19.22155 -18.84236 -17.46682 -17.25106 -17.07369 -16.89803 -16.71645 -16.27125 -15.67187 -15.58070 -15.35828 -15.04446 -14.81310 -14.59973 -14.31822 -14.04976 -13.80165 -13.59963 -13.44369 -13.19788 -12.98573 -12.77431 -12.70730 -12.29613 -12.24878 -12.18488 -11.91312 -11.59915 -11.47165 -11.38473 -11.20435 -10.82178 -10.49155 -10.24978 -9.87781 -8.31693 -7.88313 -6.45437 0.45760 0.79822 1.40290 1.41699 1.52914 2.32045 2.34587 2.94589 2.97582 3.00050 3.04193 3.64524 3.75971 3.87350 3.99629 4.02169 4.07620 4.29022 4.30722 4.38628 4.44153 4.49738 4.59800 4.65037 4.72820 4.75495 4.81344 4.85289 4.92370 5.00309 5.08818 5.13061 5.17958 5.27683 5.29595 5.36319 5.47688 5.52287 5.55553 5.79935 5.90904 6.28210 6.46314 6.60345 6.77290 7.18814 7.29939 8.80253 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.037805 B = 0.002339 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.460463 B =11967.953055 C =12506.883386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.979 3.021 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.557 4.557 8 H 0.072 0.928 9 C 0.274 3.726 10 N -0.739 5.739 11 C 0.175 3.825 12 C -0.187 4.187 13 C -0.154 4.154 14 C 0.051 3.949 15 O -0.323 6.323 16 C 0.062 3.938 17 C -0.083 4.083 18 C -0.147 4.147 19 C 0.060 3.940 20 O -0.406 6.406 21 C 0.059 3.941 22 C -0.147 4.147 23 C -0.099 4.099 24 C -0.168 4.168 25 H 0.269 0.731 26 H -0.012 1.012 27 H -0.012 1.012 28 H 0.398 0.602 29 H 0.101 0.899 30 H 0.136 0.864 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.102 0.898 38 H 0.061 0.939 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.150 0.850 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.506 -24.078 0.407 24.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.802 3.198 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.595 4.595 8 H 0.090 0.910 9 C 0.151 3.849 10 N -0.367 5.367 11 C 0.070 3.930 12 C -0.210 4.210 13 C -0.174 4.174 14 C 0.005 3.995 15 O -0.238 6.238 16 C -0.013 4.013 17 C -0.101 4.101 18 C -0.185 4.185 19 C -0.016 4.016 20 O -0.325 6.325 21 C -0.017 4.017 22 C -0.185 4.185 23 C -0.118 4.118 24 C -0.191 4.191 25 H 0.078 0.922 26 H 0.006 0.994 27 H 0.006 0.994 28 H 0.232 0.768 29 H 0.119 0.881 30 H 0.154 0.846 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.120 0.880 38 H 0.080 0.920 39 H 0.126 0.874 40 H 0.109 0.891 41 H 0.089 0.911 42 H 0.168 0.832 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.837 -24.068 0.273 24.236 hybrid contribution 0.285 1.709 0.141 1.738 sum -2.552 -22.359 0.413 22.508 Atomic orbital electron populations 1.70077 1.07866 1.28483 1.50211 1.25943 0.95835 1.03483 0.93989 0.85246 0.78473 0.77503 0.78562 1.19664 1.20591 1.18582 1.21604 0.94026 0.91290 1.52559 0.91034 1.18507 0.88735 0.84132 0.93535 1.45087 1.08845 1.02069 1.80723 1.18271 0.93307 0.85642 0.95805 1.20539 0.94170 0.96895 1.09431 1.21046 0.99822 0.91594 1.04900 1.18710 0.93319 0.83008 1.04451 1.85963 1.24640 1.23108 1.90044 1.22895 0.79262 0.97669 1.01466 1.21175 0.96895 0.92782 0.99256 1.22188 1.02216 0.96898 0.97211 1.22681 0.80961 0.95085 1.02916 1.87910 1.22943 1.81649 1.40002 1.22703 1.00636 0.92067 0.86315 1.22182 0.94103 0.98297 1.03924 1.20331 0.92698 0.96583 1.02159 1.20601 0.99390 0.90527 1.08538 0.92222 0.99440 0.99376 0.76795 0.88081 0.84643 0.91785 0.92458 0.89673 0.91905 0.90377 0.92159 0.87966 0.92048 0.87402 0.89075 0.91145 0.83237 0.83787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.81 13.29 21.45 0.28 -54.52 16 2 C 0.01 0.40 5.46 84.65 0.46 0.86 16 3 Si 0.98 42.82 29.54 68.60 2.03 44.84 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.56 -30.81 9.28 25.60 0.24 -30.57 16 8 H 0.07 3.72 7.60 -2.91 -0.02 3.70 16 9 C 0.27 14.67 4.67 85.63 0.40 15.06 16 10 N -0.74 -32.44 5.74 -342.97 -1.97 -34.40 16 11 C 0.17 6.88 6.66 38.14 0.25 7.14 16 12 C -0.19 -7.41 9.31 22.39 0.21 -7.20 16 13 C -0.15 -5.06 9.03 22.35 0.20 -4.85 16 14 C 0.05 1.54 6.69 22.49 0.15 1.69 16 15 O -0.32 -8.39 9.76 -93.56 -0.91 -9.30 16 16 C 0.06 1.28 4.13 71.98 0.30 1.57 16 17 C -0.08 -1.33 2.51 -10.68 -0.03 -1.36 16 18 C -0.15 -2.41 5.29 30.68 0.16 -2.25 16 19 C 0.06 0.87 6.84 72.01 0.49 1.36 16 20 O -0.41 -7.13 10.77 -148.98 -1.60 -8.74 16 21 C 0.06 0.75 6.84 72.01 0.49 1.24 16 22 C -0.15 -1.93 5.42 30.68 0.17 -1.77 16 23 C -0.10 -2.85 9.98 22.35 0.22 -2.62 16 24 C -0.17 -5.35 9.89 22.39 0.22 -5.13 16 25 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 26 H -0.01 -0.71 7.96 -2.38 -0.02 -0.73 16 27 H -0.01 -0.67 7.94 -2.39 -0.02 -0.69 16 28 H 0.40 15.85 8.34 -92.71 -0.77 15.07 16 29 H 0.10 4.45 6.73 -2.91 -0.02 4.43 16 30 H 0.14 3.80 6.29 -2.91 -0.02 3.78 16 31 H 0.06 1.25 7.66 -2.39 -0.02 1.23 16 32 H 0.06 1.20 7.66 -2.39 -0.02 1.18 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.08 1.35 7.93 -2.38 -0.02 1.33 16 36 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 37 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.09 0.95 8.14 -2.39 -0.02 0.94 16 41 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 43 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -64.63 350.06 1.99 -62.64 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: 0.22 Total: 26.30 kcal Atomic # 6 Polarization: -30.77 SS G_CDS: 3.94 Total: -26.82 kcal Atomic # 7 Polarization: -87.24 SS G_CDS: -1.68 Total: -88.92 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -2.52 Total: -18.04 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -64.63 1.99 -62.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819445093.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.185 kcal (2) G-P(sol) polarization free energy of solvation -64.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds